Wall clock time and date at job start Tue Mar 31 2020 14:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00366 * 2 1 4 4 O 1.21563 * 119.99889 * 0.02562 * 3 2 1 5 5 C 1.47801 * 120.00545 * 180.02562 * 3 2 1 6 6 C 1.39640 * 120.09802 * 359.97438 * 5 3 2 7 7 C 1.37934 * 120.00255 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.20926 * 0.02562 * 7 6 5 9 9 Cl 1.73604 * 119.89905 * 179.97438 * 8 7 6 10 10 C 1.39083 * 120.20016 * 359.97438 * 8 7 6 11 11 N 1.40036 * 119.99920 * 179.97438 * 10 8 7 12 12 C 1.34778 * 119.99917 * 214.99315 * 11 10 8 13 13 O 1.21591 * 119.99811 * 355.51112 * 12 11 10 14 14 N 1.34774 * 120.00199 * 175.50483 * 12 11 10 15 15 C 1.46497 * 119.99916 * 180.27921 * 14 12 11 16 16 H 1.08993 * 109.47345 * 324.72090 * 15 14 12 17 17 C 1.53002 * 109.47391 * 84.72686 * 15 14 12 18 18 C 1.50708 * 109.46923 * 204.72288 * 15 14 12 19 19 H 1.07995 * 119.99784 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99839 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99943 * 179.97438 * 20 18 15 22 22 Si 1.86798 * 120.00363 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47422 * 89.99361 * 22 20 18 24 24 H 1.48498 * 109.47456 * 209.99686 * 22 20 18 25 25 H 1.48505 * 109.46821 * 329.99976 * 22 20 18 26 26 C 1.38543 * 119.99540 * 0.25225 * 10 8 7 27 27 H 1.08994 * 109.47020 * 299.99695 * 1 2 3 28 28 H 1.08997 * 109.46720 * 60.00232 * 1 2 3 29 29 H 1.09005 * 109.46678 * 179.97438 * 1 2 3 30 30 H 0.97011 * 120.00240 * 180.02562 * 2 1 3 31 31 H 1.07994 * 119.99637 * 0.02562 * 6 5 3 32 32 H 1.07996 * 119.89475 * 179.97438 * 7 6 5 33 33 H 0.97002 * 120.00183 * 34.99805 * 11 10 8 34 34 H 0.96999 * 119.99646 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.46555 * 299.99858 * 17 15 14 36 36 H 1.09002 * 109.47076 * 59.99447 * 17 15 14 37 37 H 1.08995 * 109.47272 * 179.97438 * 17 15 14 38 38 H 0.97000 * 120.00017 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.10417 * 179.72362 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6169 1.1672 -0.0006 6 6 4.3172 -0.0409 -0.0006 7 6 5.6966 -0.0386 -0.0006 8 6 6.3908 1.1585 0.0000 9 17 8.1269 1.1521 0.0006 10 6 5.7020 2.3668 0.0000 11 7 6.4088 3.5757 0.0011 12 6 5.9229 4.6398 0.6705 13 8 4.8327 4.5756 1.2051 14 7 6.6455 5.7748 0.7476 15 6 6.1200 6.9293 1.4805 16 1 5.0387 6.9794 1.3526 17 6 6.4515 6.7838 2.9670 18 6 6.7479 8.1912 0.9470 19 1 7.4662 8.1384 0.1423 20 6 6.4046 9.4130 1.4856 21 7 6.9529 10.5142 1.0204 22 14 5.1616 9.5044 2.8771 23 1 5.8685 9.4081 4.1795 24 1 4.4313 10.7953 2.8045 25 1 4.1969 8.3822 2.7534 26 6 4.3166 2.3742 0.0047 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9501 -0.8401 -0.0004 31 1 3.7788 -0.9771 -0.0006 32 1 6.2364 -0.9739 -0.0002 33 1 7.2480 3.6473 -0.4801 34 1 7.5154 5.8258 0.3215 35 1 5.9974 5.8711 3.3529 36 1 7.5329 6.7337 3.0949 37 1 6.0609 7.6430 3.5122 38 1 6.7117 11.3738 1.3996 39 1 3.7799 3.3114 0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156260592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:23 Heat of formation + Delta-G solvation = -61.055149 kcal Electronic energy + Delta-G solvation = -24724.216345 eV Core-core repulsion = 20885.072698 eV Total energy + Delta-G solvation = -3839.143646 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94151 -40.95871 -39.52185 -37.53180 -37.11186 -35.96882 -35.65630 -34.45987 -32.18475 -32.10616 -30.26505 -27.89054 -27.24626 -24.67296 -24.56748 -22.98585 -21.70279 -21.62694 -20.06299 -19.68102 -18.36911 -17.79817 -17.66976 -17.26141 -16.91927 -16.54552 -16.31325 -16.12167 -15.67619 -15.22079 -15.01093 -14.89761 -14.74581 -14.57332 -14.14707 -13.93462 -13.75550 -13.56920 -13.27563 -13.19008 -12.95171 -12.79802 -12.55657 -12.17122 -12.05162 -11.70527 -11.61992 -11.30872 -11.21945 -11.16450 -10.89110 -10.28773 -10.06573 -9.89503 -9.26319 -8.40199 -6.46112 -0.47159 0.14633 0.94389 1.25919 1.35026 1.44521 1.50429 1.62132 2.04458 2.15136 2.24810 2.67789 2.96160 3.19079 3.62995 3.66943 3.98392 4.08893 4.15888 4.41258 4.46703 4.51696 4.61651 4.66485 4.71725 4.86906 4.94596 4.97835 4.98191 5.15277 5.24691 5.25879 5.33463 5.40675 5.56478 5.67136 5.82822 6.20633 6.47101 6.55631 6.99970 7.15013 7.18818 7.47827 8.74962 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003569 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.353037 B = 7843.042655 C = 9708.546398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.709 5.709 3 C 0.550 3.450 4 O -0.584 6.584 5 C -0.126 4.126 6 C -0.072 4.072 7 C -0.083 4.083 8 C -0.044 4.044 9 Cl -0.047 7.047 10 C 0.158 3.842 11 N -0.675 5.675 12 C 0.697 3.303 13 O -0.615 6.615 14 N -0.706 5.706 15 C 0.260 3.740 16 H 0.022 0.978 17 C -0.155 4.155 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.033 3.967 21 N -0.931 5.931 22 Si 0.936 3.064 23 H -0.257 1.257 24 H -0.291 1.291 25 H -0.266 1.266 26 C -0.082 4.082 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.123 0.877 30 H 0.422 0.578 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.421 0.579 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.271 0.729 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 -31.270 -3.065 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.362 5.362 3 C 0.338 3.662 4 O -0.465 6.465 5 C -0.130 4.130 6 C -0.092 4.092 7 C -0.102 4.102 8 C -0.075 4.075 9 Cl -0.018 7.018 10 C 0.062 3.938 11 N -0.324 5.324 12 C 0.397 3.603 13 O -0.495 6.495 14 N -0.359 5.359 15 C 0.155 3.845 16 H 0.040 0.960 17 C -0.213 4.213 18 C -0.571 4.571 19 H 0.078 0.922 20 C -0.168 4.168 21 N -0.570 5.570 22 Si 0.763 3.237 23 H -0.182 1.182 24 H -0.218 1.218 25 H -0.191 1.191 26 C -0.104 4.104 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.261 0.739 31 H 0.203 0.797 32 H 0.203 0.797 33 H 0.260 0.740 34 H 0.243 0.757 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.152 -30.290 -2.546 30.679 hybrid contribution 0.606 1.006 0.109 1.179 sum -3.546 -29.284 -2.437 29.599 Atomic orbital electron populations 1.21752 0.78126 1.04832 1.01434 1.45539 1.08564 1.07892 1.74236 1.18528 0.87638 0.84196 0.75884 1.90820 1.70827 1.33492 1.51341 1.19891 0.92679 0.94405 1.06044 1.21588 0.93667 0.97111 0.96787 1.21269 0.93832 0.96845 0.98258 1.21148 0.85699 0.93495 1.07109 1.98389 1.07951 1.98724 1.96727 1.17231 0.90402 0.84408 1.01796 1.42449 1.27039 1.08845 1.54102 1.16134 0.83935 0.80817 0.79393 1.90908 1.22045 1.83095 1.53494 1.45133 1.22170 1.11546 1.57024 1.18683 0.94348 0.82684 0.88769 0.96046 1.22360 1.02069 0.99399 0.97514 1.21210 1.26036 0.90023 1.19864 0.92189 1.25491 0.97263 0.95105 0.98898 1.69962 1.44522 0.98772 1.43761 0.86051 0.80032 0.76980 0.80610 1.18210 1.21823 1.19142 1.21251 0.92441 0.99319 0.97426 0.93520 0.93181 0.85876 0.73933 0.79712 0.79688 0.73995 0.75743 0.93793 0.91351 0.93926 0.91945 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.39 16 2 N -0.71 -10.30 5.66 -487.52 -2.76 -13.06 16 3 C 0.55 14.52 7.77 86.77 0.67 15.20 16 4 O -0.58 -22.51 16.34 -3.91 -0.06 -22.57 16 5 C -0.13 -3.04 5.87 -20.10 -0.12 -3.15 16 6 C -0.07 -0.90 9.54 22.54 0.21 -0.69 16 7 C -0.08 -1.04 9.80 22.23 0.22 -0.82 16 8 C -0.04 -0.88 6.34 22.51 0.14 -0.74 16 9 Cl -0.05 -0.82 27.93 -2.72 -0.08 -0.89 16 10 C 0.16 4.46 6.30 38.11 0.24 4.70 16 11 N -0.67 -20.39 5.05 -317.18 -1.60 -21.99 16 12 C 0.70 27.91 8.37 179.05 1.50 29.41 16 13 O -0.62 -29.86 13.42 -4.00 -0.05 -29.92 16 14 N -0.71 -28.78 5.07 -461.41 -2.34 -31.12 16 15 C 0.26 12.78 2.15 44.25 0.10 12.87 16 16 H 0.02 1.19 6.64 -2.39 -0.02 1.18 16 17 C -0.16 -6.98 8.96 71.98 0.65 -6.33 16 18 C -0.53 -29.52 9.31 25.60 0.24 -29.29 16 19 H 0.06 3.50 7.98 -2.91 -0.02 3.47 16 20 C 0.03 1.86 5.45 84.65 0.46 2.33 16 21 N -0.93 -56.37 13.96 21.45 0.30 -56.07 16 22 Si 0.94 45.84 24.37 68.60 1.67 47.51 16 23 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.27 -13.24 6.53 99.48 0.65 -12.60 16 26 C -0.08 -2.69 8.24 22.65 0.19 -2.50 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.42 2.14 6.86 -92.70 -0.64 1.50 16 31 H 0.19 0.34 6.39 -2.91 -0.02 0.32 16 32 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.42 10.09 8.09 -92.71 -0.75 9.34 16 34 H 0.41 14.20 8.56 -92.71 -0.79 13.41 16 35 H 0.04 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 38 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 39 H 0.12 5.07 5.78 -2.91 -0.02 5.06 16 Total: -1.00 -83.30 341.77 -0.17 -83.48 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -1.11 Total: 21.26 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 5.86 Total: 23.38 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -6.40 Total: -122.24 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.12 Total: -52.49 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.89 kcal Total: -83.30 -0.17 -83.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156260592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.423 kcal (2) G-P(sol) polarization free energy of solvation -83.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds