Wall clock time and date at job start Tue Mar 31 2020 14:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47007 * 2 1 4 4 C 1.50696 * 109.47660 * 120.00025 * 2 1 3 5 5 H 1.08003 * 120.00056 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99996 * 300.00021 * 4 2 1 7 7 N 1.31516 * 119.99829 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46725 * 60.00317 * 8 6 4 10 10 H 1.48504 * 109.47322 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47459 * 300.00541 * 8 6 4 12 12 N 1.46498 * 109.47181 * 240.00275 * 2 1 3 13 13 C 1.34783 * 120.00172 * 84.71819 * 12 2 1 14 14 O 1.21591 * 119.99719 * 0.28303 * 13 12 2 15 15 N 1.34776 * 119.99879 * 180.27752 * 13 12 2 16 16 C 1.40184 * 119.99850 * 175.53033 * 15 13 12 17 17 C 1.38316 * 120.01295 * 34.68029 * 16 15 13 18 18 C 1.39717 * 119.82817 * 179.75298 * 17 16 15 19 19 C 1.43205 * 120.07063 * 180.23397 * 18 17 16 20 20 N 7.81756 * 104.75251 * 306.87469 * 2 1 3 21 21 C 1.39747 * 119.86177 * 0.51914 * 18 17 16 22 22 C 1.37833 * 120.02279 * 359.73526 * 21 18 17 23 23 C 1.38776 * 120.17253 * 0.02562 * 22 21 18 24 24 O 1.35835 * 119.93037 * 179.97438 * 23 22 21 25 25 C 1.42899 * 117.00327 * 0.02562 * 24 23 22 26 26 F 1.39901 * 109.47017 * 300.00164 * 25 24 23 27 27 F 1.39904 * 109.46779 * 59.99937 * 25 24 23 28 28 H 1.08997 * 109.47107 * 59.99483 * 1 2 3 29 29 H 1.08994 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46554 * 300.00185 * 1 2 3 31 31 H 0.96996 * 119.99824 * 180.02562 * 7 6 4 32 32 H 0.96999 * 119.99789 * 265.00035 * 12 2 1 33 33 H 0.96999 * 120.00389 * 355.52374 * 15 13 12 34 34 H 1.07999 * 120.08606 * 359.97438 * 17 16 15 35 35 H 1.07991 * 119.99134 * 179.70664 * 21 18 17 36 36 H 1.08001 * 119.91520 * 179.97438 * 22 21 18 37 37 H 1.08998 * 109.47706 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1202 4.0079 9 1 3.8066 -1.1207 4.0080 10 1 1.8263 -0.4205 5.2204 11 1 1.8263 -2.5202 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 2.1417 -0.0195 -2.3586 14 8 1.8525 1.1602 -2.4131 15 7 2.5856 -0.6562 -3.4604 16 6 2.6253 0.0157 -4.6901 17 6 2.9207 1.3663 -4.7313 18 6 2.9643 2.0310 -5.9594 19 6 3.2746 3.4281 -6.0085 20 7 3.5207 4.5364 -6.0475 21 6 2.6985 1.3309 -7.1393 22 6 2.3996 -0.0138 -7.0909 23 6 2.3609 -0.6763 -5.8721 24 8 2.0652 -2.0014 -5.8301 25 6 1.8059 -2.6482 -7.0777 26 9 0.7116 -2.0384 -7.7006 27 9 2.9314 -2.5401 -7.9017 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 0.7089 1.1612 3.4844 32 1 2.2490 -1.6317 -1.1526 33 1 2.8778 -1.5794 -3.4025 34 1 3.1208 1.9049 -3.8168 35 1 2.7270 1.8436 -8.0893 36 1 2.1941 -0.5530 -8.0038 37 1 1.5844 -3.7009 -6.9022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159473865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:45 Heat of formation + Delta-G solvation = -111.746081 kcal Electronic energy + Delta-G solvation = -26823.267590 eV Core-core repulsion = 22430.129139 eV Total energy + Delta-G solvation = -4393.138450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.73813 -47.71798 -40.87174 -39.29698 -38.05558 -36.29561 -35.20448 -34.30380 -32.50222 -30.95256 -30.11634 -28.34096 -26.69998 -25.29107 -23.62270 -23.51685 -21.50942 -19.95472 -19.47048 -19.34040 -18.36729 -18.33137 -18.24944 -16.57665 -16.30691 -15.87422 -15.52978 -15.03076 -14.95027 -14.58009 -14.32218 -14.22421 -14.12574 -14.05556 -13.96187 -13.79643 -13.46672 -13.26373 -12.92227 -12.62483 -12.45156 -12.24052 -12.01527 -11.77414 -11.58043 -11.14211 -11.02497 -10.82179 -10.42686 -10.27762 -10.26430 -9.54892 -9.10172 -8.90042 -8.60886 -8.26270 -7.86799 -6.16089 -4.25811 0.55616 1.06928 2.11572 2.61885 2.72783 2.99074 3.07370 3.23296 3.29245 3.30308 3.59101 3.79123 3.86579 3.90180 4.24399 4.28692 4.51794 4.54212 4.84963 4.90030 5.16528 5.23815 5.50714 5.57549 5.78613 6.03897 6.27626 6.34955 6.73421 6.87445 6.93135 7.03043 7.14699 7.37735 7.46356 7.57287 7.76348 7.92360 8.10797 8.64899 8.76916 9.11846 9.42055 10.89860 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.003172 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.034889 B = 8826.195103 C =10264.816015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.714 5.714 13 C 0.693 3.307 14 O -0.582 6.582 15 N -0.689 5.689 16 C 0.173 3.827 17 C -0.043 4.043 18 C -0.034 4.034 19 C 0.263 3.737 20 N -0.420 5.420 21 C -0.057 4.057 22 C -0.175 4.175 23 C 0.098 3.902 24 O -0.315 6.315 25 C 0.413 3.587 26 F -0.196 7.196 27 F -0.198 7.198 28 H 0.016 0.984 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.266 0.734 32 H 0.388 0.612 33 H 0.408 0.592 34 H 0.166 0.834 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -10.133 -20.632 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.460 6.460 15 N -0.337 5.337 16 C 0.075 3.925 17 C -0.066 4.066 18 C -0.039 4.039 19 C -0.052 4.052 20 N -0.095 5.095 21 C -0.079 4.079 22 C -0.194 4.194 23 C 0.051 3.949 24 O -0.232 6.232 25 C 0.323 3.677 26 F -0.178 7.178 27 F -0.180 7.180 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.244 0.756 34 H 0.183 0.817 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.566 -7.330 -20.287 21.723 hybrid contribution 0.323 -1.821 0.593 1.942 sum 2.888 -9.151 -19.694 21.907 Atomic orbital electron populations 1.22106 0.98433 0.99151 1.01019 1.18721 0.90926 0.93788 0.78722 0.93143 1.21152 1.32728 1.13373 0.90202 0.92071 1.24874 0.94763 0.94946 0.99035 1.69889 1.35601 1.22343 1.24105 0.86487 0.79160 0.79550 0.81763 1.20161 1.21115 1.20164 1.45874 1.68193 1.13451 1.08979 1.16150 0.78584 0.85490 0.80390 1.90880 1.57096 1.14065 1.83931 1.42697 1.68684 1.16582 1.05765 1.16519 1.01811 0.91350 0.82794 1.21379 0.94686 0.92472 0.98107 1.15827 1.07969 0.85872 0.94196 1.25486 0.93540 0.92483 0.93690 1.81231 1.09219 1.11724 1.07353 1.20831 0.96780 0.93045 0.97215 1.21184 1.06246 0.95851 0.96127 1.18839 0.99760 0.82356 0.93933 1.86593 1.84227 1.21410 1.31018 1.23395 0.73000 0.96114 0.75230 1.93114 1.55210 1.86057 1.83428 1.93107 1.53833 1.97094 1.73958 0.96522 0.95472 0.89062 0.92431 0.77998 0.75586 0.81688 0.84403 0.83842 0.80028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.28 6.85 2.56 -69.09 -0.18 6.67 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.04 16 4 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.71 -13.90 5.07 -59.81 -0.30 -14.21 16 13 C 0.69 13.00 8.37 -86.91 -0.73 12.27 16 14 O -0.58 -13.05 13.42 5.29 0.07 -12.98 16 15 N -0.69 -9.57 5.19 -14.14 -0.07 -9.65 16 16 C 0.17 2.29 6.32 -83.54 -0.53 1.76 16 17 C -0.04 -0.61 8.40 -39.00 -0.33 -0.94 16 18 C -0.03 -0.42 5.74 -106.85 -0.61 -1.03 16 19 C 0.26 3.61 15.32 -22.47 -0.34 3.27 16 20 N -0.42 -6.60 18.54 41.84 0.78 -5.82 16 21 C -0.06 -0.55 9.74 -39.17 -0.38 -0.93 16 22 C -0.17 -1.67 8.23 -39.53 -0.33 -1.99 16 23 C 0.10 1.07 6.51 -38.91 -0.25 0.82 16 24 O -0.32 -2.80 9.97 -19.22 -0.19 -3.00 16 25 C 0.41 2.39 5.98 101.05 0.60 3.00 16 26 F -0.20 -1.50 15.57 2.25 0.04 -1.47 16 27 F -0.20 -1.36 15.57 2.25 0.04 -1.32 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.39 6.35 8.56 -40.82 -0.35 6.00 16 33 H 0.41 4.42 8.58 -40.82 -0.35 4.07 16 34 H 0.17 2.73 6.19 -52.49 -0.32 2.41 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.14 1.15 5.07 -52.49 -0.27 0.89 16 37 H 0.18 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -31.94 336.55 -5.33 -37.27 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.23 Total: 7.36 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -3.12 Total: 7.34 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 1.03 Total: -53.38 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.12 Total: -15.97 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.07 Total: -2.79 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.94 -5.33 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159473865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.476 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds