Wall clock time and date at job start Tue Mar 31 2020 14:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21299 * 120.00053 * 2 1 4 4 N 1.34774 * 119.99760 * 180.02562 * 2 1 3 5 5 C 1.40089 * 119.99479 * 175.44386 * 4 2 1 6 6 C 1.38880 * 119.99447 * 215.07685 * 5 4 2 7 7 C 1.38063 * 120.02257 * 179.72409 * 6 5 4 8 8 C 1.38841 * 120.00740 * 0.55788 * 7 6 5 9 9 N 1.40167 * 119.99858 * 179.74522 * 8 7 6 10 10 C 1.34777 * 120.00280 * 34.74397 * 9 8 7 11 11 O 1.21595 * 120.00123 * 355.44310 * 10 9 8 12 12 N 1.34778 * 120.00245 * 175.44576 * 10 9 8 13 13 C 1.46495 * 120.00135 * 180.02562 * 12 10 9 14 14 H 1.09013 * 109.47275 * 324.99613 * 13 12 10 15 15 C 1.52998 * 109.47414 * 84.99511 * 13 12 10 16 16 C 1.50701 * 109.47341 * 204.99926 * 13 12 10 17 17 H 1.07999 * 119.99696 * 359.97438 * 16 13 12 18 18 C 1.37868 * 120.00469 * 179.97438 * 16 13 12 19 19 N 1.31525 * 119.99958 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00471 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47091 * 270.00317 * 20 18 16 22 22 H 1.48506 * 109.46552 * 30.00018 * 20 18 16 23 23 H 1.48495 * 109.47081 * 149.99875 * 20 18 16 24 24 C 1.38939 * 119.99567 * 359.46793 * 8 7 6 25 25 Cl 1.73592 * 120.01210 * 180.27622 * 24 8 7 26 26 C 1.38166 * 119.97905 * 0.25462 * 24 8 7 27 27 H 1.08995 * 109.47167 * 269.99987 * 1 2 3 28 28 H 1.09009 * 109.47002 * 29.99759 * 1 2 3 29 29 H 1.08999 * 109.47200 * 149.99304 * 1 2 3 30 30 H 0.96992 * 120.00271 * 355.43480 * 4 2 1 31 31 H 1.08005 * 119.99099 * 0.02976 * 6 5 4 32 32 H 1.07996 * 119.99623 * 180.30391 * 7 6 5 33 33 H 0.96997 * 119.99897 * 214.73728 * 9 8 7 34 34 H 0.96997 * 119.99784 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47486 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.47013 * 300.00013 * 15 13 12 37 37 H 1.08997 * 109.47083 * 60.00077 * 15 13 12 38 38 H 0.97000 * 120.00111 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.00631 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5784 -1.1690 -0.0969 6 6 4.2249 -2.1806 -0.7951 7 6 5.6019 -2.1799 -0.8952 8 6 6.3417 -1.1740 -0.2882 9 7 7.7400 -1.1763 -0.3855 10 6 8.3365 -1.6173 -1.5107 11 8 7.6667 -2.0900 -2.4088 12 7 9.6754 -1.5344 -1.6406 13 6 10.3237 -2.0132 -2.8640 14 1 9.7903 -2.8863 -3.2401 15 6 10.2998 -0.9068 -3.9205 16 6 11.7516 -2.3885 -2.5620 17 1 12.1377 -2.2808 -1.5591 18 6 12.5651 -2.8695 -3.5658 19 7 12.0951 -3.0003 -4.7872 20 14 14.3354 -3.3341 -3.1916 21 1 15.2102 -2.1506 -3.3895 22 1 14.4387 -3.7962 -1.7841 23 1 14.7642 -4.4248 -4.1035 24 6 5.6956 -0.1619 0.4109 25 17 6.6197 1.0999 1.1640 26 6 4.3172 -0.1599 0.5061 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6982 -2.0059 0.0660 31 1 3.6500 -2.9656 -1.2640 32 1 6.1039 -2.9641 -1.4424 33 1 8.2783 -0.8605 0.3570 34 1 10.2097 -1.1570 -0.9244 35 1 10.7817 -1.2632 -4.8309 36 1 9.2669 -0.6354 -4.1390 37 1 10.8331 -0.0338 -3.5445 38 1 12.6674 -3.3390 -5.4934 39 1 3.8145 0.6264 1.0497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159571175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:39 Heat of formation + Delta-G solvation = -42.647314 kcal Electronic energy + Delta-G solvation = -24421.127081 eV Core-core repulsion = 20582.781658 eV Total energy + Delta-G solvation = -3838.345423 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81649 -39.91743 -38.30191 -36.53982 -35.57354 -34.65251 -33.73054 -32.38702 -30.85882 -30.60580 -29.05833 -27.46309 -25.25859 -23.62251 -22.67277 -21.43697 -20.71724 -19.84481 -18.29230 -18.11546 -17.55385 -17.15637 -16.06547 -15.73455 -15.15863 -15.01473 -14.96030 -14.49977 -14.29424 -14.00905 -13.73276 -13.46456 -13.24214 -13.19247 -12.80764 -12.63768 -12.39928 -11.91373 -11.77814 -11.52742 -11.12761 -11.06450 -11.01904 -10.84501 -10.62686 -10.33579 -10.24261 -10.19742 -9.65189 -9.32974 -9.05459 -8.80201 -8.58268 -8.06890 -7.62971 -6.13848 -4.23084 1.02489 1.26974 2.07050 2.27888 2.79043 3.13032 3.23892 3.30981 3.33566 3.50800 3.90291 4.31122 4.37924 4.76488 4.83465 4.89002 4.95087 5.00733 5.18708 5.24579 5.29922 5.41582 5.63035 5.88483 6.06038 6.20987 6.35423 6.57586 6.78336 6.97824 6.99863 7.08197 7.09458 7.20277 7.43122 7.60844 7.80684 7.80845 7.96798 8.13835 8.69926 8.81455 9.18672 9.44954 10.92162 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.002579 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.630718 B =10854.941823 C =11439.312385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.507 3.493 3 O -0.525 6.525 4 N -0.670 5.670 5 C 0.120 3.880 6 C -0.117 4.117 7 C -0.093 4.093 8 C 0.183 3.817 9 N -0.692 5.692 10 C 0.695 3.305 11 O -0.582 6.582 12 N -0.716 5.716 13 C 0.281 3.719 14 H 0.050 0.950 15 C -0.149 4.149 16 C -0.534 4.534 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.285 1.285 24 C -0.057 4.057 25 Cl -0.065 7.065 26 C -0.093 4.093 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.412 0.588 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.405 0.595 34 H 0.387 0.613 35 H 0.091 0.909 36 H 0.016 0.984 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.545 2.759 12.705 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.295 3.705 3 O -0.401 6.401 4 N -0.316 5.316 5 C 0.025 3.975 6 C -0.138 4.138 7 C -0.114 4.114 8 C 0.084 3.916 9 N -0.341 5.341 10 C 0.396 3.604 11 O -0.459 6.459 12 N -0.367 5.367 13 C 0.179 3.821 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.211 1.211 24 C -0.087 4.087 25 Cl -0.036 7.036 26 C -0.114 4.114 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.248 0.752 31 H 0.151 0.849 32 H 0.177 0.823 33 H 0.240 0.760 34 H 0.219 0.781 35 H 0.109 0.891 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.496 3.140 11.652 23.785 hybrid contribution 1.343 -0.138 0.888 1.616 sum -19.153 3.001 12.540 23.089 Atomic orbital electron populations 1.21884 0.90721 1.05356 1.05034 1.21037 0.90896 0.83230 0.75326 1.90762 1.70353 1.31279 1.47676 1.43544 1.04943 1.09887 1.73243 1.17468 0.82496 0.97674 0.99829 1.20903 0.94502 0.99427 0.98927 1.21244 0.92732 0.98099 0.99321 1.17306 0.83186 0.92989 0.98079 1.42886 1.04134 1.68764 1.18267 1.16116 0.83459 0.79373 0.81501 1.90860 1.63337 1.51066 1.40686 1.45878 1.03444 1.64750 1.22629 1.18704 0.91575 0.93149 0.78671 0.93180 1.22109 0.97683 0.98242 1.02707 1.21201 0.95459 1.44703 0.95857 0.92045 1.24881 0.98840 0.95145 0.94844 1.69909 1.36311 1.44960 1.00839 0.86426 0.84096 0.78197 0.78238 1.20545 1.19873 1.21061 1.20513 0.91887 0.91561 1.04781 1.98353 1.73529 1.51052 1.80694 1.20816 0.90640 0.99873 1.00081 0.88552 0.88458 0.89862 0.75221 0.84887 0.82327 0.75952 0.78056 0.89065 0.96539 0.95473 0.92537 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.31 36.01 0.37 -0.36 16 2 C 0.51 4.62 7.78 -10.99 -0.09 4.54 16 3 O -0.53 -7.31 14.54 5.54 0.08 -7.22 16 4 N -0.67 -5.41 5.34 -9.83 -0.05 -5.46 16 5 C 0.12 1.39 6.30 -83.62 -0.53 0.87 16 6 C -0.12 -1.37 9.96 -39.41 -0.39 -1.76 16 7 C -0.09 -1.39 8.69 -39.42 -0.34 -1.73 16 8 C 0.18 2.83 6.31 -83.56 -0.53 2.30 16 9 N -0.69 -11.09 5.06 -14.16 -0.07 -11.16 16 10 C 0.70 14.05 8.38 -86.92 -0.73 13.32 16 11 O -0.58 -13.64 13.42 5.28 0.07 -13.56 16 12 N -0.72 -14.90 5.07 -59.81 -0.30 -15.20 16 13 C 0.28 7.09 2.56 -69.09 -0.18 6.92 16 14 H 0.05 1.45 7.58 -51.92 -0.39 1.05 16 15 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 16 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.06 -0.81 6.33 -39.35 -0.25 -1.06 16 25 Cl -0.07 -0.85 27.95 -51.86 -1.45 -2.30 16 26 C -0.09 -1.25 8.47 -39.38 -0.33 -1.58 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.41 1.71 8.82 -40.82 -0.36 1.35 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.16 2.67 6.19 -52.49 -0.32 2.34 16 33 H 0.40 5.45 8.09 -40.82 -0.33 5.12 16 34 H 0.39 6.95 8.56 -40.82 -0.35 6.60 16 35 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.15 2.05 6.22 -52.49 -0.33 1.73 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -33.39 348.29 -8.39 -41.78 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -4.48 Total: 11.01 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.04 Total: 5.45 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.20 Total: -55.88 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.15 Total: -20.79 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.45 Total: -2.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.39 -8.39 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159571175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.865 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds