Wall clock time and date at job start Tue Mar 31 2020 14:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21299 * 120.00053 * 2 1 4 4 N 1.34774 * 119.99760 * 180.02562 * 2 1 3 5 5 C 1.40089 * 119.99479 * 175.44386 * 4 2 1 6 6 C 1.38880 * 119.99447 * 215.07685 * 5 4 2 7 7 C 1.38063 * 120.02257 * 179.72409 * 6 5 4 8 8 C 1.38841 * 120.00740 * 0.55788 * 7 6 5 9 9 N 1.40167 * 119.99858 * 179.74522 * 8 7 6 10 10 C 1.34777 * 120.00280 * 34.74397 * 9 8 7 11 11 O 1.21595 * 120.00123 * 355.44310 * 10 9 8 12 12 N 1.34778 * 120.00245 * 175.44576 * 10 9 8 13 13 C 1.46495 * 120.00135 * 180.02562 * 12 10 9 14 14 H 1.09013 * 109.47275 * 324.99613 * 13 12 10 15 15 C 1.52998 * 109.47414 * 84.99511 * 13 12 10 16 16 C 1.50701 * 109.47341 * 204.99926 * 13 12 10 17 17 H 1.07999 * 119.99696 * 359.97438 * 16 13 12 18 18 C 1.37868 * 120.00469 * 179.97438 * 16 13 12 19 19 N 1.31525 * 119.99958 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00471 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47091 * 270.00317 * 20 18 16 22 22 H 1.48506 * 109.46552 * 30.00018 * 20 18 16 23 23 H 1.48495 * 109.47081 * 149.99875 * 20 18 16 24 24 C 1.38939 * 119.99567 * 359.46793 * 8 7 6 25 25 Cl 1.73592 * 120.01210 * 180.27622 * 24 8 7 26 26 C 1.38166 * 119.97905 * 0.25462 * 24 8 7 27 27 H 1.08995 * 109.47167 * 269.99987 * 1 2 3 28 28 H 1.09009 * 109.47002 * 29.99759 * 1 2 3 29 29 H 1.08999 * 109.47200 * 149.99304 * 1 2 3 30 30 H 0.96992 * 120.00271 * 355.43480 * 4 2 1 31 31 H 1.08005 * 119.99099 * 0.02976 * 6 5 4 32 32 H 1.07996 * 119.99623 * 180.30391 * 7 6 5 33 33 H 0.96997 * 119.99897 * 214.73728 * 9 8 7 34 34 H 0.96997 * 119.99784 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47486 * 180.02562 * 15 13 12 36 36 H 1.08999 * 109.47013 * 300.00013 * 15 13 12 37 37 H 1.08997 * 109.47083 * 60.00077 * 15 13 12 38 38 H 0.97000 * 120.00111 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.00631 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5784 -1.1690 -0.0969 6 6 4.2249 -2.1806 -0.7951 7 6 5.6019 -2.1799 -0.8952 8 6 6.3417 -1.1740 -0.2882 9 7 7.7400 -1.1763 -0.3855 10 6 8.3365 -1.6173 -1.5107 11 8 7.6667 -2.0900 -2.4088 12 7 9.6754 -1.5344 -1.6406 13 6 10.3237 -2.0132 -2.8640 14 1 9.7903 -2.8863 -3.2401 15 6 10.2998 -0.9068 -3.9205 16 6 11.7516 -2.3885 -2.5620 17 1 12.1377 -2.2808 -1.5591 18 6 12.5651 -2.8695 -3.5658 19 7 12.0951 -3.0003 -4.7872 20 14 14.3354 -3.3341 -3.1916 21 1 15.2102 -2.1506 -3.3895 22 1 14.4387 -3.7962 -1.7841 23 1 14.7642 -4.4248 -4.1035 24 6 5.6956 -0.1619 0.4109 25 17 6.6197 1.0999 1.1640 26 6 4.3172 -0.1599 0.5061 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6982 -2.0059 0.0660 31 1 3.6500 -2.9656 -1.2640 32 1 6.1039 -2.9641 -1.4424 33 1 8.2783 -0.8605 0.3570 34 1 10.2097 -1.1570 -0.9244 35 1 10.7817 -1.2632 -4.8309 36 1 9.2669 -0.6354 -4.1390 37 1 10.8331 -0.0338 -3.5445 38 1 12.6674 -3.3390 -5.4934 39 1 3.8145 0.6264 1.0497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159571175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:39 Heat of formation + Delta-G solvation = -66.356346 kcal Electronic energy + Delta-G solvation = -24422.155181 eV Core-core repulsion = 20582.781658 eV Total energy + Delta-G solvation = -3839.373524 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88730 -41.14734 -39.50132 -37.59764 -37.06739 -36.15073 -34.96731 -34.22188 -31.89673 -31.50745 -30.60467 -28.58049 -27.32670 -24.77341 -23.87539 -22.86389 -21.83296 -21.41379 -19.86479 -19.07537 -18.82973 -18.05563 -17.76784 -16.92538 -16.72009 -16.31110 -16.04972 -15.88546 -15.68076 -15.13815 -14.90853 -14.63556 -14.61067 -14.41163 -14.12633 -13.73302 -13.28889 -13.13863 -13.00465 -12.95138 -12.85295 -12.70627 -12.54191 -12.29063 -12.13935 -12.12916 -11.90130 -11.25841 -11.09724 -10.99796 -10.61620 -10.54388 -9.88195 -9.82681 -8.79657 -8.16978 -6.34004 -0.03552 0.18129 0.98683 1.45864 1.46718 1.52359 1.57060 1.67991 2.05977 2.19128 2.42537 2.64364 3.13573 3.35907 3.70522 3.88453 4.03955 4.19244 4.24433 4.53861 4.60555 4.70276 4.74023 4.79957 4.93391 5.04914 5.07317 5.11278 5.18181 5.29842 5.39121 5.47706 5.59456 5.63640 5.81970 5.86501 6.08728 6.17734 6.44559 6.73053 7.14293 7.15389 7.33970 7.61634 8.89472 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.002579 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.630718 B =10854.941823 C =11439.312385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.502 3.498 3 O -0.578 6.578 4 N -0.656 5.656 5 C 0.131 3.869 6 C -0.105 4.105 7 C -0.107 4.107 8 C 0.155 3.845 9 N -0.676 5.676 10 C 0.697 3.303 11 O -0.617 6.617 12 N -0.714 5.714 13 C 0.290 3.710 14 H 0.005 0.995 15 C -0.135 4.135 16 C -0.546 4.546 17 H 0.073 0.927 18 C 0.015 3.985 19 N -0.916 5.916 20 Si 0.973 3.027 21 H -0.273 1.273 22 H -0.264 1.264 23 H -0.286 1.286 24 C -0.057 4.057 25 Cl -0.059 7.059 26 C -0.102 4.102 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.434 0.566 31 H 0.167 0.833 32 H 0.137 0.863 33 H 0.417 0.583 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.010 0.990 37 H 0.038 0.962 38 H 0.266 0.734 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.848 2.593 14.200 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.292 3.708 3 O -0.457 6.457 4 N -0.304 5.304 5 C 0.035 3.965 6 C -0.126 4.126 7 C -0.129 4.129 8 C 0.058 3.942 9 N -0.325 5.325 10 C 0.397 3.603 11 O -0.498 6.498 12 N -0.366 5.366 13 C 0.186 3.814 14 H 0.023 0.977 15 C -0.194 4.194 16 C -0.584 4.584 17 H 0.092 0.908 18 C -0.185 4.185 19 N -0.554 5.554 20 Si 0.798 3.202 21 H -0.198 1.198 22 H -0.189 1.189 23 H -0.212 1.212 24 C -0.087 4.087 25 Cl -0.030 7.030 26 C -0.123 4.123 27 H 0.136 0.864 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.274 0.726 31 H 0.184 0.816 32 H 0.154 0.846 33 H 0.255 0.745 34 H 0.237 0.763 35 H 0.088 0.912 36 H 0.029 0.971 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.855 2.966 13.220 25.714 hybrid contribution 1.563 -0.075 0.460 1.631 sum -20.292 2.891 13.679 24.642 Atomic orbital electron populations 1.21922 0.86455 1.06750 1.06782 1.22012 0.92811 0.82340 0.73588 1.90748 1.71733 1.33178 1.50067 1.43554 1.03382 1.11108 1.72321 1.17569 0.84298 0.96458 0.98129 1.21125 0.93357 1.00028 0.98059 1.21185 0.94204 0.97780 0.99698 1.17446 0.82617 0.94238 0.99941 1.42523 1.04738 1.68002 1.17246 1.16150 0.83007 0.79052 0.82069 1.90836 1.64035 1.52528 1.42368 1.45490 1.03971 1.65131 1.21975 1.18279 0.91239 0.91658 0.80180 0.97673 1.21937 0.97125 0.98466 1.01886 1.21512 0.95752 1.44659 0.96472 0.90841 1.25780 1.03158 0.94980 0.94594 1.70053 1.37885 1.45678 1.01827 0.85324 0.78736 0.77845 0.78286 1.19814 1.18851 1.21177 1.20529 0.92277 0.91404 1.04530 1.98349 1.73468 1.50676 1.80509 1.20926 0.90396 1.00436 1.00569 0.86438 0.88763 0.86755 0.72603 0.81551 0.84565 0.74519 0.76250 0.91224 0.97061 0.94336 0.92500 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.31 71.24 0.73 -0.08 16 2 C 0.50 8.04 7.78 87.66 0.68 8.72 16 3 O -0.58 -15.62 14.54 -3.09 -0.04 -15.66 16 4 N -0.66 -8.78 5.34 -303.38 -1.62 -10.40 16 5 C 0.13 2.83 6.30 38.12 0.24 3.07 16 6 C -0.11 -2.31 9.96 22.38 0.22 -2.09 16 7 C -0.11 -3.22 8.69 22.37 0.19 -3.03 16 8 C 0.15 4.82 6.31 38.12 0.24 5.06 16 9 N -0.68 -21.86 5.06 -316.96 -1.60 -23.47 16 10 C 0.70 28.82 8.38 179.05 1.50 30.32 16 11 O -0.62 -30.08 13.42 -4.01 -0.05 -30.13 16 12 N -0.71 -30.08 5.07 -461.40 -2.34 -32.42 16 13 C 0.29 15.04 2.56 44.25 0.11 15.15 16 14 H 0.01 0.32 7.58 -2.38 -0.02 0.31 16 15 C -0.14 -6.96 9.26 71.98 0.67 -6.29 16 16 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C 0.02 0.80 5.30 84.65 0.45 1.25 16 19 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 20 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 24 C -0.06 -1.61 6.33 22.42 0.14 -1.47 16 25 Cl -0.06 -1.52 27.95 -2.72 -0.08 -1.60 16 26 C -0.10 -2.66 8.47 22.40 0.19 -2.47 16 27 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.43 1.94 8.82 -92.71 -0.82 1.12 16 31 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.14 4.76 6.19 -2.91 -0.02 4.74 16 33 H 0.42 11.12 8.09 -92.71 -0.75 10.37 16 34 H 0.40 14.30 8.56 -92.71 -0.79 13.51 16 35 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 36 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 39 H 0.15 3.95 6.22 -2.91 -0.02 3.94 16 Total: -1.00 -74.99 348.29 0.91 -74.08 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -1.22 Total: 28.07 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 5.60 Total: 19.68 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.32 Total: -118.26 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.10 Total: -45.79 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -74.99 0.91 -74.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159571175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.727 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds