Wall clock time and date at job start Tue Mar 31 2020 14:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.37881 * 120.00184 * 84.99551 * 12 2 1 14 14 N 1.32375 * 120.81776 * 359.72587 * 13 12 2 15 15 C 1.33402 * 121.38438 * 179.75679 * 14 13 12 16 16 C 1.47477 * 118.67012 * 180.27031 * 15 14 13 17 17 C 1.35005 * 125.27681 * 179.97438 * 16 15 14 18 18 C 1.37704 * 114.71592 * 179.79055 * 17 16 15 19 19 C 1.33808 * 115.08597 * 0.50124 * 18 17 16 20 20 S 1.75860 * 109.74872 * 359.72777 * 19 18 17 21 21 N 1.32304 * 122.66006 * 0.53418 * 15 14 13 22 22 C 1.33952 * 120.40512 * 359.73435 * 21 15 14 23 23 C 1.40234 * 121.88610 * 179.97438 * 22 21 15 24 24 C 1.36319 * 119.58749 * 180.02562 * 23 22 21 25 25 C 1.39189 * 121.01486 * 359.97438 * 24 23 22 26 26 C 1.36449 * 120.90452 * 359.97438 * 25 24 23 27 27 C 1.39849 * 119.54480 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 33 33 H 1.07994 * 122.63826 * 359.96835 * 17 16 15 34 34 H 1.08003 * 122.45847 * 180.20660 * 18 17 16 35 35 H 1.07995 * 125.12558 * 179.69483 * 19 18 17 36 36 H 1.08005 * 120.20011 * 0.02562 * 23 22 21 37 37 H 1.08004 * 119.49496 * 180.02562 * 24 23 22 38 38 H 1.08001 * 119.54803 * 180.02562 * 25 24 23 39 39 H 1.07995 * 120.22297 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 2.1500 -0.0029 -2.3839 14 7 1.8347 1.2803 -2.4631 15 6 1.9621 1.9578 -3.6052 16 6 1.5990 3.3870 -3.6243 17 6 1.6759 4.1967 -4.7019 18 6 1.2767 5.4951 -4.4761 19 6 0.8846 5.7586 -3.2242 20 16 1.0057 4.3029 -2.2448 21 7 2.3962 1.3982 -4.7227 22 6 2.7356 0.1026 -4.7447 23 6 3.1988 -0.5221 -5.9116 24 6 3.5308 -1.8439 -5.8811 25 6 3.4178 -2.5849 -4.7082 26 6 2.9716 -2.0079 -3.5550 27 6 2.6225 -0.6537 -3.5517 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9035 -0.5277 4.4376 32 1 2.2490 -1.6319 -1.1526 33 1 2.0204 3.8524 -5.6657 34 1 1.2844 6.2470 -5.2514 35 1 0.5454 6.7203 -2.8687 36 1 3.2919 0.0406 -6.8288 37 1 3.8877 -2.3235 -6.7806 38 1 3.6878 -3.6306 -4.7108 39 1 2.8886 -2.5931 -2.6512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171365988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:21 Heat of formation + Delta-G solvation = 91.904883 kcal Electronic energy + Delta-G solvation = -24164.480538 eV Core-core repulsion = 20777.155457 eV Total energy + Delta-G solvation = -3387.325081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22262 -39.03313 -38.71208 -37.78929 -35.37583 -33.73986 -32.93467 -31.72304 -30.94006 -29.40691 -27.28335 -26.18178 -25.22043 -23.92888 -23.20607 -22.28583 -20.48760 -20.03507 -19.15446 -18.57543 -18.01079 -17.57833 -17.16912 -16.32928 -16.29646 -16.10816 -15.56737 -15.49235 -15.10492 -14.86568 -14.30045 -14.24756 -14.14675 -13.98402 -13.53154 -13.50325 -13.31725 -13.03870 -13.01417 -12.78732 -12.56989 -12.46951 -12.12446 -11.73126 -11.57295 -11.55594 -11.30545 -10.89168 -10.58646 -10.11901 -10.00166 -9.59379 -9.48453 -8.61096 -8.41631 -6.48572 -0.81681 -0.30548 0.30958 0.59378 1.03541 1.14073 1.25959 1.34355 1.44428 1.76186 2.05323 2.23864 2.25970 2.90095 2.94703 3.19896 3.36210 3.60304 3.68780 4.05845 4.20256 4.31422 4.34507 4.39035 4.41378 4.51146 4.56857 4.65770 4.71707 4.83159 4.94750 5.03019 5.15720 5.22317 5.25387 5.29491 5.38518 5.44347 5.47852 5.52636 5.73412 5.83475 6.02711 6.34637 6.49316 6.68969 7.16904 7.33331 8.73431 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.005844 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.899388 B = 4789.968372 C = 7834.123457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.253 3.747 3 H 0.035 0.965 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.033 3.967 7 N -0.932 5.932 8 Si 0.934 3.066 9 H -0.261 1.261 10 H -0.292 1.292 11 H -0.254 1.254 12 N -0.663 5.663 13 C 0.468 3.532 14 N -0.621 5.621 15 C 0.419 3.581 16 C -0.176 4.176 17 C -0.074 4.074 18 C -0.144 4.144 19 C -0.195 4.195 20 S 0.123 5.877 21 N -0.563 5.563 22 C 0.168 3.832 23 C -0.127 4.127 24 C -0.058 4.058 25 C -0.133 4.133 26 C -0.076 4.076 27 C -0.222 4.222 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.271 0.729 32 H 0.415 0.585 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.200 0.800 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.163 0.837 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 5.592 -20.459 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.149 3.851 3 H 0.053 0.947 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.167 4.167 7 N -0.570 5.570 8 Si 0.761 3.239 9 H -0.186 1.186 10 H -0.219 1.219 11 H -0.178 1.178 12 N -0.291 5.291 13 C 0.211 3.789 14 N -0.351 5.351 15 C 0.151 3.849 16 C -0.295 4.295 17 C -0.109 4.109 18 C -0.174 4.174 19 C -0.332 4.332 20 S 0.388 5.612 21 N -0.284 5.284 22 C 0.042 3.958 23 C -0.146 4.146 24 C -0.079 4.079 25 C -0.151 4.151 26 C -0.096 4.096 27 C -0.231 4.231 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.174 0.826 34 H 0.197 0.803 35 H 0.217 0.783 36 H 0.169 0.831 37 H 0.190 0.810 38 H 0.180 0.820 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.324 6.231 -18.627 19.686 hybrid contribution 0.179 -0.482 -0.280 0.586 sum -1.145 5.748 -18.908 19.795 Atomic orbital electron populations 1.22321 0.97789 1.01335 0.99529 1.18851 0.91065 0.93408 0.81820 0.94715 1.21207 1.32677 1.13736 0.89974 0.92763 1.25511 0.96688 0.99308 0.95176 1.69968 1.46460 1.41908 0.98698 0.86073 0.79681 0.80531 0.77661 1.18642 1.21910 1.17797 1.44847 1.65274 1.12733 1.06209 1.18939 0.85304 0.88230 0.86424 1.67911 1.30067 1.08105 1.29016 1.20085 0.88900 0.92072 0.83796 1.22289 1.14225 0.93683 0.99292 1.20683 0.98410 0.92914 0.98894 1.20385 1.02482 0.96564 0.97946 1.26469 1.06832 1.02539 0.97342 1.84953 1.62362 1.01413 1.12482 1.68749 1.21082 1.11227 1.27389 1.19168 0.94274 0.88904 0.93434 1.20910 1.01555 0.95923 0.96258 1.21438 0.94318 0.92660 0.99446 1.21278 1.00055 1.02028 0.91749 1.21001 0.96572 0.91701 1.00371 1.19236 1.11254 0.98105 0.94490 0.93755 0.93654 0.92205 0.91971 0.74606 0.82609 0.80281 0.78264 0.83092 0.81010 0.81955 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 8.98 71.98 0.65 -5.98 16 2 C 0.25 11.96 2.18 44.25 0.10 12.05 16 3 H 0.04 1.81 6.63 -2.39 -0.02 1.80 16 4 C -0.54 -29.27 9.31 25.60 0.24 -29.04 16 5 H 0.05 3.16 7.98 -2.91 -0.02 3.13 16 6 C 0.03 1.88 5.45 84.66 0.46 2.34 16 7 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 8 Si 0.93 44.23 24.37 68.60 1.67 45.90 16 9 H -0.26 -11.65 6.87 99.48 0.68 -10.97 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.25 -11.79 6.53 99.48 0.65 -11.15 16 12 N -0.66 -27.04 5.13 -326.72 -1.68 -28.72 16 13 C 0.47 18.70 7.52 134.11 1.01 19.70 16 14 N -0.62 -26.31 8.97 -186.31 -1.67 -27.98 16 15 C 0.42 16.28 7.56 137.13 1.04 17.32 16 16 C -0.18 -5.90 6.42 23.96 0.15 -5.74 16 17 C -0.07 -1.94 9.80 21.40 0.21 -1.73 16 18 C -0.14 -2.86 10.16 21.14 0.21 -2.64 16 19 C -0.19 -4.02 11.23 66.81 0.75 -3.27 16 20 S 0.12 3.79 23.03 -56.49 -1.30 2.48 16 21 N -0.56 -20.26 9.92 -183.49 -1.82 -22.08 16 22 C 0.17 5.54 6.61 40.16 0.27 5.80 16 23 C -0.13 -3.02 10.01 22.31 0.22 -2.80 16 24 C -0.06 -1.02 9.95 22.05 0.22 -0.80 16 25 C -0.13 -2.52 9.96 22.08 0.22 -2.30 16 26 C -0.08 -2.00 9.53 22.24 0.21 -1.79 16 27 C -0.22 -7.57 5.76 -21.16 -0.12 -7.69 16 28 H 0.04 1.97 3.27 -2.39 -0.01 1.96 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.42 15.15 6.77 -92.71 -0.63 14.52 16 33 H 0.16 3.78 7.93 -2.91 -0.02 3.76 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.13 3.21 6.57 -2.91 -0.02 3.19 16 Total: -1.00 -70.92 340.34 1.73 -69.18 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.40 Total: 23.19 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.84 Total: -6.57 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -4.87 Total: -134.18 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.90 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.30 Total: 2.48 kcal Total: -70.92 1.73 -69.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171365988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.086 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds