Wall clock time and date at job start Tue Mar 31 2020 14:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 S 1.81409 * 109.46821 * 179.97438 * 11 10 9 13 13 O 1.42097 * 110.54324 * 291.62961 * 12 11 10 14 14 O 1.42096 * 110.53825 * 68.38125 * 12 11 10 15 15 N 1.65601 * 104.44945 * 180.02562 * 12 11 10 16 16 C 1.46499 * 119.99949 * 65.00072 * 15 12 11 17 17 H 1.08997 * 110.72665 * 333.05032 * 16 15 12 18 18 C 1.54344 * 110.81868 * 96.45464 * 16 15 12 19 19 C 1.51369 * 105.16974 * 144.57388 * 18 16 15 20 20 C 1.38496 * 130.39550 * 162.80904 * 19 18 16 21 21 C 1.38099 * 120.21883 * 179.97438 * 20 19 18 22 22 C 1.38260 * 119.93430 * 0.02562 * 21 20 19 23 23 C 1.38097 * 119.93286 * 359.97438 * 22 21 20 24 24 C 1.38213 * 109.76079 * 342.81042 * 19 18 16 25 25 C 1.51376 * 109.75687 * 0.02562 * 24 19 18 26 26 H 1.09002 * 110.29771 * 258.26748 * 25 24 19 27 27 O 1.42895 * 110.30439 * 136.11683 * 25 24 19 28 28 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 30 30 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 31 31 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 32 32 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 33 33 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 34 34 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 35 35 H 0.97003 * 119.99961 * 245.00787 * 15 12 11 36 36 H 1.09002 * 110.30155 * 263.49198 * 18 16 15 37 37 H 1.08992 * 110.30591 * 25.65000 * 18 16 15 38 38 H 1.08011 * 119.89076 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.03291 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.03112 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.89216 * 180.02562 * 23 22 21 42 42 H 0.96695 * 114.00343 * 64.24738 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 16 6.1562 -4.3468 -0.0013 13 8 5.8610 -4.9794 1.2364 14 8 5.8592 -4.9813 -1.2376 15 7 7.8058 -4.2019 -0.0021 16 6 8.4890 -3.6029 1.1471 17 1 7.8316 -2.9055 1.6662 18 6 9.0017 -4.6943 2.1106 19 6 10.3106 -4.1612 2.6525 20 6 11.0445 -4.5437 3.7630 21 6 12.2300 -3.9038 4.0669 22 6 12.6863 -2.8774 3.2607 23 6 11.9559 -2.4946 2.1529 24 6 10.7668 -3.1352 1.8467 25 6 9.7953 -2.9081 0.7083 26 1 10.1742 -3.3606 -0.2082 27 8 9.5737 -1.5094 0.5170 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8746 -0.6800 -0.8912 31 1 3.6585 -3.1501 0.8892 32 1 3.6578 -3.1506 -0.8907 33 1 5.9142 -2.1230 -0.8926 34 1 5.9155 -2.1224 0.8873 35 1 8.3198 -4.5135 -0.7635 36 1 8.2904 -4.8467 2.9223 37 1 9.1674 -5.6271 1.5717 38 1 10.6885 -5.3451 4.3936 39 1 12.8001 -4.2047 4.9334 40 1 13.6133 -2.3761 3.4966 41 1 12.3132 -1.6931 1.5234 42 1 10.3608 -1.0208 0.2400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178710784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:22 Heat of formation + Delta-G solvation = -132.977373 kcal Electronic energy + Delta-G solvation = -25105.560331 eV Core-core repulsion = 21368.881952 eV Total energy + Delta-G solvation = -3736.678378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37415 -38.31641 -38.05517 -37.09081 -36.51833 -36.44281 -34.25573 -33.71276 -31.91832 -30.17024 -28.80472 -27.52760 -25.41101 -23.51914 -22.30579 -22.05160 -21.90360 -20.52867 -19.00963 -18.89133 -18.30721 -17.81035 -17.32417 -17.02355 -16.49611 -16.26681 -16.16110 -15.96877 -15.59066 -14.93408 -14.85404 -14.59179 -14.21525 -14.09792 -13.89132 -13.66217 -13.62639 -13.43697 -13.24946 -13.21269 -13.15312 -12.87307 -12.70631 -12.61162 -12.57850 -12.06827 -11.85054 -11.79531 -11.65010 -11.42260 -11.36269 -11.05280 -10.77894 -10.56107 -9.75201 -9.52894 -8.30372 -6.36123 -0.78813 0.36320 0.45612 1.36419 1.38835 1.50735 1.66808 2.35980 2.68399 2.78591 3.04699 3.13117 3.19563 3.30432 3.57544 3.72815 3.87205 3.91162 3.99494 4.11444 4.14384 4.24980 4.29233 4.33012 4.53620 4.60614 4.63729 4.76227 4.83598 4.85109 4.95747 5.08615 5.09915 5.17341 5.33536 5.45100 5.51745 5.60374 5.62007 5.62860 6.01417 6.07397 6.24826 6.71905 6.81155 7.28562 8.86541 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.003002 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.083210 B = 9324.289326 C =10296.970498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.543 4.543 8 H 0.031 0.969 9 C -0.005 4.005 10 C -0.103 4.103 11 C -0.611 4.611 12 S 2.627 3.373 13 O -0.984 6.984 14 O -0.989 6.989 15 N -1.095 6.095 16 C 0.152 3.848 17 H 0.107 0.893 18 C -0.099 4.099 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.147 4.147 25 C 0.149 3.851 26 H 0.100 0.900 27 O -0.567 6.567 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.429 0.571 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.119 -5.390 4.343 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.581 4.581 8 H 0.050 0.950 9 C -0.044 4.044 10 C -0.143 4.143 11 C -0.742 4.742 12 S 2.722 3.278 13 O -0.973 6.973 14 O -0.979 6.979 15 N -0.855 5.855 16 C 0.044 3.956 17 H 0.124 0.876 18 C -0.138 4.138 19 C -0.102 4.102 20 C -0.140 4.140 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.119 4.119 24 C -0.148 4.148 25 C 0.089 3.911 26 H 0.117 0.883 27 O -0.375 6.375 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.266 0.734 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 31.790 -6.240 4.650 32.728 hybrid contribution 0.332 1.148 -0.402 1.260 sum 32.121 -5.092 4.248 32.799 Atomic orbital electron populations 1.70079 1.08453 1.28307 1.52362 1.26091 0.95695 1.03816 0.93903 0.85610 0.79632 0.77736 0.79407 1.18890 1.20999 1.16436 1.21551 0.92277 0.93340 1.50968 0.95035 1.19504 0.93755 0.93524 0.97612 1.21184 0.90329 1.00455 1.02290 1.30515 1.05569 1.24398 1.13736 1.04324 0.73106 0.77310 0.73013 1.93554 1.83766 1.73461 1.46557 1.93551 1.83569 1.74444 1.46339 1.55339 1.25173 1.77290 1.27725 1.21437 0.94615 0.93735 0.85774 0.87555 1.21551 0.94051 0.99018 0.99210 1.20562 0.96570 0.97275 0.95756 1.20925 0.95481 1.00997 0.96624 1.21421 0.95818 0.96112 1.00276 1.21414 1.00742 0.97601 0.94838 1.20869 0.93275 0.99750 0.98028 1.21238 0.96859 0.98190 0.98520 1.21430 0.91328 0.82934 0.95444 0.88299 1.86546 1.40754 1.18944 1.91298 0.92406 0.95163 0.95183 0.91704 0.91689 0.82751 0.83407 0.73386 0.89653 0.88264 0.85095 0.83744 0.83473 0.83883 0.75159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 7 C -0.54 -31.91 9.66 25.60 0.25 -31.66 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 10 C -0.10 -4.03 5.16 30.60 0.16 -3.87 16 11 C -0.61 -16.82 5.97 71.98 0.43 -16.39 16 12 S 2.63 70.52 5.41 -56.49 -0.31 70.22 16 13 O -0.98 -32.24 17.81 -127.65 -2.27 -34.51 16 14 O -0.99 -32.60 18.08 -127.65 -2.31 -34.90 16 15 N -1.10 -19.81 5.47 -165.63 -0.91 -20.71 16 16 C 0.15 2.73 3.21 45.90 0.15 2.88 16 17 H 0.11 2.01 7.23 -2.39 -0.02 2.00 16 18 C -0.10 -1.79 6.49 30.52 0.20 -1.59 16 19 C -0.10 -1.73 6.14 -19.60 -0.12 -1.85 16 20 C -0.12 -1.86 10.04 22.30 0.22 -1.63 16 21 C -0.12 -1.45 10.05 22.24 0.22 -1.23 16 22 C -0.13 -1.42 10.05 22.24 0.22 -1.20 16 23 C -0.10 -1.21 10.00 22.30 0.22 -0.99 16 24 C -0.15 -2.22 5.82 -19.59 -0.11 -2.34 16 25 C 0.15 2.10 3.94 30.51 0.12 2.22 16 26 H 0.10 1.00 7.83 -2.39 -0.02 0.98 16 27 O -0.57 -8.18 13.35 -148.98 -1.99 -10.16 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 30 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.55 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.15 3.49 7.47 -2.39 -0.02 3.47 16 35 H 0.43 5.64 8.58 -96.74 -0.83 4.81 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 40 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 42 H 0.40 2.35 9.10 -74.06 -0.67 1.68 16 Total: -1.00 -81.76 362.51 -3.57 -85.33 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.51 Total: 16.39 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 2.54 Total: -57.21 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -0.61 Total: -80.98 kcal Atomic # 8 Polarization: -73.01 SS G_CDS: -6.57 Total: -79.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 70.52 SS G_CDS: -0.31 Total: 70.22 kcal Total: -81.76 -3.57 -85.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178710784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.646 kcal (2) G-P(sol) polarization free energy of solvation -81.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds