Wall clock time and date at job start Tue Mar 31 2020 14:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 119.99955 * 2 1 4 4 C 1.34775 * 119.99854 * 180.02562 * 2 1 3 5 5 O 1.21616 * 119.99996 * 0.02562 * 4 2 1 6 6 S 1.76200 * 120.00073 * 180.02562 * 4 2 1 7 7 C 1.76191 * 100.00082 * 185.14192 * 6 4 2 8 8 C 1.38925 * 120.07105 * 264.83306 * 7 6 4 9 9 C 1.38077 * 119.92507 * 179.70020 * 8 7 6 10 10 C 1.38321 * 120.07217 * 0.59627 * 9 8 7 11 11 C 1.38261 * 120.14482 * 359.67649 * 10 9 8 12 12 C 1.50704 * 119.96235 * 180.02562 * 11 10 9 13 13 S 1.81404 * 109.47055 * 269.97812 * 12 11 10 14 14 C 1.81404 * 102.99869 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47004 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47214 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00059 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00484 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47059 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47177 * 120.00348 * 20 18 16 23 23 H 1.48502 * 109.47015 * 240.00022 * 20 18 16 24 24 C 1.38123 * 120.07378 * 0.02839 * 11 10 9 25 25 H 1.09001 * 109.47518 * 270.00290 * 1 2 3 26 26 H 1.09009 * 109.47302 * 29.99927 * 1 2 3 27 27 H 1.08994 * 109.47307 * 149.99515 * 1 2 3 28 28 H 1.08997 * 109.47580 * 269.99941 * 3 2 1 29 29 H 1.09006 * 109.47429 * 30.00020 * 3 2 1 30 30 H 1.09002 * 109.46987 * 149.99915 * 3 2 1 31 31 H 1.07993 * 120.03604 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.96112 * 180.29989 * 9 8 7 33 33 H 1.07997 * 119.92374 * 179.70019 * 10 9 8 34 34 H 1.08992 * 109.47233 * 29.97890 * 12 11 10 35 35 H 1.08995 * 109.46967 * 149.98325 * 12 11 10 36 36 H 1.08994 * 109.46883 * 300.00005 * 14 13 12 37 37 H 1.08992 * 109.46950 * 60.00252 * 14 13 12 38 38 H 1.08997 * 109.47397 * 300.00450 * 15 14 13 39 39 H 1.09009 * 109.47167 * 60.00290 * 15 14 13 40 40 H 0.96994 * 120.00374 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03902 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5307 -2.2204 -0.0015 6 16 3.9008 -1.1673 0.0002 7 6 4.2068 -2.8953 -0.1564 8 6 4.4339 -3.6675 0.9760 9 6 4.6672 -5.0226 0.8503 10 6 4.6873 -5.6092 -0.4022 11 6 4.4673 -4.8425 -1.5316 12 6 4.4895 -5.4860 -2.8942 13 16 6.1765 -5.4358 -3.5591 14 6 6.0023 -6.2416 -5.1750 15 6 7.3622 -6.2799 -5.8750 16 6 7.2176 -6.9498 -7.2171 17 1 6.2522 -7.3117 -7.5389 18 6 8.3175 -7.0998 -8.0349 19 7 9.4930 -6.6587 -7.6434 20 14 8.1382 -7.9297 -9.6988 21 1 6.7231 -8.3322 -9.9012 22 1 8.5412 -6.9833 -10.7699 23 1 9.0075 -9.1326 -9.7483 24 6 4.2272 -3.4875 -1.4124 25 1 -0.3634 0.0001 1.0277 26 1 -0.3634 0.8901 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1383 0.5139 31 1 4.4235 -3.2091 1.9538 32 1 4.8390 -5.6242 1.7306 33 1 4.8748 -6.6684 -0.4981 34 1 4.1620 -6.5223 -2.8119 35 1 3.8194 -4.9451 -3.5623 36 1 5.6368 -7.2590 -5.0361 37 1 5.2945 -5.6815 -5.7858 38 1 7.7282 -5.2626 -6.0138 39 1 8.0698 -6.8404 -5.2640 40 1 10.2669 -6.7645 -8.2184 41 1 4.0551 -2.8893 -2.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190970732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:20 Heat of formation + Delta-G solvation = -16.325711 kcal Electronic energy + Delta-G solvation = -21216.412155 eV Core-core repulsion = 17927.545043 eV Total energy + Delta-G solvation = -3288.867112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.77888 -39.33437 -36.08181 -33.68324 -32.96906 -31.17976 -30.86037 -28.85098 -27.24485 -26.87212 -25.20431 -23.20913 -22.16401 -21.62303 -20.89694 -18.36603 -17.12541 -16.79868 -16.51165 -16.29477 -15.90064 -15.59508 -15.51179 -14.61808 -14.49299 -13.97132 -13.81175 -13.78657 -13.67382 -13.29203 -13.13419 -13.08420 -12.85581 -12.64930 -12.52154 -12.38292 -11.97529 -11.51970 -11.35983 -11.12415 -11.03503 -10.59608 -10.20180 -10.10832 -9.68907 -9.65225 -9.30690 -9.06030 -9.04584 -8.71305 -8.59829 -8.42517 -7.15261 -6.06069 -4.10635 0.41266 1.07888 1.31390 1.86049 2.01581 2.32652 2.89794 3.21349 3.28138 3.35817 3.39628 3.66391 4.41712 4.54351 4.55529 4.68679 4.75117 4.83196 4.92175 5.08097 5.11805 5.17193 5.20354 5.29437 5.32591 5.35438 5.54429 5.68069 5.82517 5.83606 5.99436 6.08049 6.18234 6.19866 6.38725 6.57739 6.69624 6.73148 7.37782 7.56931 7.65362 7.90384 8.27465 8.94597 9.53257 11.04729 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.002144 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.849852 B =13057.954116 C =13713.229193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.607 5.607 3 C 0.074 3.926 4 C 0.500 3.500 5 O -0.517 6.517 6 S -0.045 6.045 7 C -0.125 4.125 8 C -0.059 4.059 9 C -0.128 4.128 10 C -0.068 4.068 11 C -0.068 4.068 12 C -0.054 4.054 13 S -0.274 6.274 14 C -0.061 4.061 15 C 0.037 3.963 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.039 4.039 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.197 14.344 20.235 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.344 5.344 3 C -0.069 4.069 4 C 0.180 3.820 5 O -0.396 6.396 6 S 0.189 5.811 7 C -0.237 4.237 8 C -0.080 4.080 9 C -0.148 4.148 10 C -0.088 4.088 11 C -0.071 4.071 12 C -0.202 4.202 13 S -0.044 6.044 14 C -0.209 4.209 15 C -0.001 4.001 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.061 4.061 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.692 15.162 20.703 29.570 hybrid contribution -1.948 -1.860 -1.607 3.137 sum -16.640 13.302 19.096 28.609 Atomic orbital electron populations 1.21727 0.78356 1.03553 1.02143 1.47749 1.07132 1.05638 1.73890 1.21904 0.97244 0.84786 1.02972 1.22889 0.93804 0.85637 0.79657 1.90891 1.67387 1.29885 1.51421 1.84889 1.01013 1.04822 1.90425 1.21231 1.10217 0.95977 0.96272 1.21377 0.95504 0.93715 0.97414 1.21124 1.01480 0.94483 0.97666 1.21287 0.95283 1.00416 0.91810 1.19307 1.00496 0.93338 0.93972 1.22242 0.98874 1.03412 0.95631 1.87179 1.11797 1.80774 1.24654 1.23720 1.05640 1.00241 0.91329 1.18906 0.88455 0.98349 0.94409 1.21133 0.94941 1.38701 1.01251 0.92412 1.25023 0.95231 0.95617 0.98469 1.69982 0.99448 1.46186 1.37267 0.86464 0.78194 0.79197 0.83717 1.19707 1.20885 1.20888 1.21297 0.94454 0.94099 0.96274 0.92400 0.90691 0.90329 0.91469 0.90139 0.90348 0.85277 0.85097 0.85053 0.89352 0.89539 0.91348 0.91362 0.95517 0.95521 0.92828 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.44 59.85 0.62 1.21 16 2 N -0.61 -5.17 3.27 -193.52 -0.63 -5.81 16 3 C 0.07 0.38 10.22 59.84 0.61 0.99 16 4 C 0.50 5.90 7.90 54.05 0.43 6.32 16 5 O -0.52 -7.90 15.66 5.26 0.08 -7.82 16 6 S -0.04 -0.48 20.04 -107.50 -2.15 -2.63 16 7 C -0.13 -1.61 4.73 -39.09 -0.18 -1.80 16 8 C -0.06 -0.68 9.79 -39.39 -0.39 -1.06 16 9 C -0.13 -1.40 10.04 -39.61 -0.40 -1.79 16 10 C -0.07 -0.83 9.70 -39.54 -0.38 -1.22 16 11 C -0.07 -0.94 5.14 -104.65 -0.54 -1.48 16 12 C -0.05 -0.78 6.07 36.01 0.22 -0.57 16 13 S -0.27 -5.15 21.72 -107.50 -2.33 -7.48 16 14 C -0.06 -1.30 5.88 37.16 0.22 -1.08 16 15 C 0.04 0.98 4.98 -27.89 -0.14 0.84 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.04 -0.54 9.44 -39.39 -0.37 -0.91 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.30 8.07 -51.92 -0.42 -0.12 16 27 H 0.08 0.66 7.42 -51.93 -0.39 0.27 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 30 H 0.08 0.40 6.59 -51.93 -0.34 0.06 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 35 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -33.74 377.17 -10.53 -44.27 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.17 Total: -2.74 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.71 Total: -13.92 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.10 Total: -31.85 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -4.49 Total: -10.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.74 -10.53 -44.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190970732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.941 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds