Wall clock time and date at job start Tue Mar 31 2020 14:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 119.99955 * 2 1 4 4 C 1.34775 * 119.99854 * 180.02562 * 2 1 3 5 5 O 1.21616 * 119.99996 * 0.02562 * 4 2 1 6 6 S 1.76200 * 120.00073 * 180.02562 * 4 2 1 7 7 C 1.76191 * 100.00082 * 185.14192 * 6 4 2 8 8 C 1.38925 * 120.07105 * 264.83306 * 7 6 4 9 9 C 1.38077 * 119.92507 * 179.70020 * 8 7 6 10 10 C 1.38321 * 120.07217 * 0.59627 * 9 8 7 11 11 C 1.38261 * 120.14482 * 359.67649 * 10 9 8 12 12 C 1.50704 * 119.96235 * 180.02562 * 11 10 9 13 13 S 1.81404 * 109.47055 * 269.97812 * 12 11 10 14 14 C 1.81404 * 102.99869 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47004 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47214 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00059 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00484 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47059 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47177 * 120.00348 * 20 18 16 23 23 H 1.48502 * 109.47015 * 240.00022 * 20 18 16 24 24 C 1.38123 * 120.07378 * 0.02839 * 11 10 9 25 25 H 1.09001 * 109.47518 * 270.00290 * 1 2 3 26 26 H 1.09009 * 109.47302 * 29.99927 * 1 2 3 27 27 H 1.08994 * 109.47307 * 149.99515 * 1 2 3 28 28 H 1.08997 * 109.47580 * 269.99941 * 3 2 1 29 29 H 1.09006 * 109.47429 * 30.00020 * 3 2 1 30 30 H 1.09002 * 109.46987 * 149.99915 * 3 2 1 31 31 H 1.07993 * 120.03604 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.96112 * 180.29989 * 9 8 7 33 33 H 1.07997 * 119.92374 * 179.70019 * 10 9 8 34 34 H 1.08992 * 109.47233 * 29.97890 * 12 11 10 35 35 H 1.08995 * 109.46967 * 149.98325 * 12 11 10 36 36 H 1.08994 * 109.46883 * 300.00005 * 14 13 12 37 37 H 1.08992 * 109.46950 * 60.00252 * 14 13 12 38 38 H 1.08997 * 109.47397 * 300.00450 * 15 14 13 39 39 H 1.09009 * 109.47167 * 60.00290 * 15 14 13 40 40 H 0.96994 * 120.00374 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03902 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5307 -2.2204 -0.0015 6 16 3.9008 -1.1673 0.0002 7 6 4.2068 -2.8953 -0.1564 8 6 4.4339 -3.6675 0.9760 9 6 4.6672 -5.0226 0.8503 10 6 4.6873 -5.6092 -0.4022 11 6 4.4673 -4.8425 -1.5316 12 6 4.4895 -5.4860 -2.8942 13 16 6.1765 -5.4358 -3.5591 14 6 6.0023 -6.2416 -5.1750 15 6 7.3622 -6.2799 -5.8750 16 6 7.2176 -6.9498 -7.2171 17 1 6.2522 -7.3117 -7.5389 18 6 8.3175 -7.0998 -8.0349 19 7 9.4930 -6.6587 -7.6434 20 14 8.1382 -7.9297 -9.6988 21 1 6.7231 -8.3322 -9.9012 22 1 8.5412 -6.9833 -10.7699 23 1 9.0075 -9.1326 -9.7483 24 6 4.2272 -3.4875 -1.4124 25 1 -0.3634 0.0001 1.0277 26 1 -0.3634 0.8901 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1383 0.5139 31 1 4.4235 -3.2091 1.9538 32 1 4.8390 -5.6242 1.7306 33 1 4.8748 -6.6684 -0.4981 34 1 4.1620 -6.5223 -2.8119 35 1 3.8194 -4.9451 -3.5623 36 1 5.6368 -7.2590 -5.0361 37 1 5.2945 -5.6815 -5.7858 38 1 7.7282 -5.2626 -6.0138 39 1 8.0698 -6.8404 -5.2640 40 1 10.2669 -6.7645 -8.2184 41 1 4.0551 -2.8893 -2.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190970732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:19 Heat of formation + Delta-G solvation = -34.785032 kcal Electronic energy + Delta-G solvation = -21217.212611 eV Core-core repulsion = 17927.545043 eV Total energy + Delta-G solvation = -3289.667568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60286 -40.26007 -36.82824 -35.78726 -33.97840 -32.91626 -32.10177 -29.36082 -28.36777 -27.50004 -27.23342 -24.12435 -23.44209 -22.76801 -22.21106 -19.14258 -18.68561 -18.01878 -17.60444 -17.04173 -16.98916 -16.75915 -16.53671 -16.51741 -15.59774 -15.46375 -15.15323 -14.74598 -14.52415 -14.40288 -14.11962 -13.87387 -13.73295 -13.57699 -13.53324 -13.48884 -13.18665 -13.01005 -12.94673 -12.50949 -12.28610 -12.19475 -12.00185 -11.69306 -11.41604 -10.99448 -10.85000 -10.62396 -10.03594 -9.95602 -9.76238 -9.39847 -8.66730 -8.24029 -6.37705 -0.47051 0.02125 0.42923 0.91478 1.06589 1.15583 1.40595 1.40883 1.54474 1.73168 2.29337 2.39666 2.70310 3.09048 3.50757 3.74748 3.97942 4.10909 4.14422 4.25003 4.25358 4.28741 4.36932 4.39554 4.42111 4.49733 4.67375 4.70062 4.84199 4.84819 4.85492 4.89005 5.15029 5.25339 5.28768 5.37159 5.41398 5.48429 5.72908 5.79091 5.89002 6.09981 6.59108 6.76770 7.31776 8.87928 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.002144 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.849852 B =13057.954116 C =13713.229193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.067 3.933 4 C 0.487 3.513 5 O -0.562 6.562 6 S -0.017 6.017 7 C -0.148 4.148 8 C -0.061 4.061 9 C -0.125 4.125 10 C -0.074 4.074 11 C -0.088 4.088 12 C -0.035 4.035 13 S -0.303 6.303 14 C -0.051 4.051 15 C 0.045 3.955 16 C -0.541 4.541 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.973 3.027 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.055 4.055 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.075 0.925 38 H -0.005 1.005 39 H -0.003 1.003 40 H 0.266 0.734 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.677 14.826 21.011 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C -0.075 4.075 4 C 0.168 3.832 5 O -0.445 6.445 6 S 0.216 5.784 7 C -0.259 4.259 8 C -0.082 4.082 9 C -0.144 4.144 10 C -0.094 4.094 11 C -0.091 4.091 12 C -0.182 4.182 13 S -0.073 6.073 14 C -0.199 4.199 15 C 0.006 3.994 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.797 3.203 21 H -0.183 1.183 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.078 4.078 25 H 0.086 0.914 26 H 0.125 0.875 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.074 0.926 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.178 15.683 21.474 31.126 hybrid contribution -1.536 -1.865 -1.691 2.950 sum -17.714 13.818 19.783 29.935 Atomic orbital electron populations 1.21888 0.77304 1.04003 1.02957 1.47977 1.08061 1.05809 1.71925 1.22176 0.97486 0.83829 1.04032 1.23171 0.94179 0.86036 0.79773 1.90862 1.68335 1.31496 1.53850 1.84659 1.00203 1.03242 1.90261 1.21555 1.10379 0.97565 0.96426 1.21756 0.94377 0.94137 0.97966 1.21515 1.00012 0.94588 0.98287 1.21565 0.94754 1.01177 0.91903 1.19327 1.02185 0.93620 0.93936 1.22242 0.95205 1.04742 0.96013 1.87219 1.16398 1.80466 1.23250 1.23355 1.02486 1.01376 0.92698 1.18675 0.90639 0.95722 0.94342 1.21572 0.95488 1.38795 1.02192 0.91473 1.26046 0.94758 0.96176 1.02886 1.70122 1.00434 1.47485 1.39063 0.85281 0.78805 0.78018 0.78212 1.18310 1.20302 1.20263 1.21369 0.95311 0.94355 0.96723 0.91398 0.87523 0.92549 0.90586 0.87141 0.90411 0.83144 0.81909 0.83570 0.87698 0.88927 0.90325 0.90638 0.98632 0.98473 0.92553 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.44 127.77 1.33 2.32 16 2 N -0.60 -9.45 3.27 -884.42 -2.90 -12.35 16 3 C 0.07 0.53 10.22 127.77 1.31 1.83 16 4 C 0.49 11.31 7.90 129.79 1.03 12.33 16 5 O -0.56 -17.42 15.66 -4.08 -0.06 -17.49 16 6 S -0.02 -0.35 20.04 -56.49 -1.13 -1.48 16 7 C -0.15 -3.73 4.73 22.59 0.11 -3.62 16 8 C -0.06 -1.32 9.79 22.40 0.22 -1.10 16 9 C -0.12 -2.47 10.04 22.25 0.22 -2.24 16 10 C -0.07 -1.71 9.70 22.29 0.22 -1.49 16 11 C -0.09 -2.38 5.14 -19.89 -0.10 -2.48 16 12 C -0.03 -0.99 6.07 71.24 0.43 -0.55 16 13 S -0.30 -11.53 21.72 -56.49 -1.23 -12.76 16 14 C -0.05 -2.19 5.88 71.98 0.42 -1.77 16 15 C 0.04 2.43 4.98 29.85 0.15 2.58 16 16 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 19 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 20 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.06 -1.53 9.44 22.40 0.21 -1.32 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.57 8.07 -2.38 -0.02 0.55 16 27 H 0.06 0.94 7.42 -2.39 -0.02 0.93 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.25 8.07 -2.38 -0.02 0.23 16 30 H 0.08 0.65 6.59 -2.39 -0.02 0.63 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.10 2.62 8.08 -2.39 -0.02 2.61 16 35 H 0.09 2.50 8.08 -2.39 -0.02 2.49 16 36 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -75.25 377.17 4.24 -71.01 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.01 Total: 9.64 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 6.24 Total: -25.72 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -2.61 Total: -69.39 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.06 Total: -17.49 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -11.87 SS G_CDS: -2.36 Total: -14.23 kcal Total: -75.25 4.24 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190970732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.224 kcal (2) G-P(sol) polarization free energy of solvation -75.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds