Wall clock time and date at job start Tue Mar 31 2020 14:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48494 * 109.47259 * 270.00181 * 3 2 1 5 5 H 1.48504 * 109.47328 * 30.00523 * 3 2 1 6 6 H 1.48506 * 109.46718 * 150.00265 * 3 2 1 7 7 C 1.37879 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99828 * 359.71983 * 7 2 1 10 10 C 1.53002 * 109.46541 * 175.00763 * 9 7 2 11 11 H 1.08993 * 109.47700 * 54.31403 * 10 9 7 12 12 N 1.46501 * 109.47153 * 294.30740 * 10 9 7 13 13 S 1.65602 * 119.99552 * 146.38391 * 12 10 9 14 14 O 1.42099 * 104.28120 * 49.62297 * 13 12 10 15 15 O 1.42103 * 104.27523 * 177.47601 * 13 12 10 16 16 C 1.81400 * 104.45040 * 293.54590 * 13 12 10 17 17 H 1.09001 * 110.45043 * 54.07395 * 16 13 12 18 18 C 1.54504 * 110.51056 * 176.67675 * 16 13 12 19 19 C 1.54485 * 104.06195 * 118.64844 * 18 16 13 20 20 O 1.44420 * 104.80133 * 23.97912 * 19 18 16 21 21 C 1.44433 * 105.27537 * 319.48568 * 20 19 18 22 22 C 1.50706 * 109.46919 * 174.31149 * 10 9 7 23 23 C 1.38229 * 119.99974 * 82.55372 * 22 10 9 24 24 C 1.38236 * 120.00191 * 179.79185 * 23 22 10 25 25 C 1.38247 * 119.99677 * 0.44073 * 24 23 22 26 26 C 1.38234 * 119.99492 * 359.81119 * 25 24 23 27 27 C 1.38230 * 119.99744 * 262.83070 * 22 10 9 28 28 H 0.96998 * 119.99649 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47281 * 295.00811 * 9 7 2 30 30 H 1.08996 * 109.46910 * 55.00940 * 9 7 2 31 31 H 0.96997 * 120.00368 * 326.37769 * 12 10 9 32 32 H 1.09004 * 110.51403 * 237.28965 * 18 16 13 33 33 H 1.09000 * 110.51264 * 0.02562 * 18 16 13 34 34 H 1.08999 * 110.37056 * 142.80644 * 19 18 16 35 35 H 1.09002 * 110.37061 * 265.03268 * 19 18 16 36 36 H 1.08992 * 110.37351 * 281.68299 * 21 20 19 37 37 H 1.08999 * 110.36873 * 159.34684 * 21 20 19 38 38 H 1.07996 * 120.00300 * 359.97438 * 23 22 10 39 39 H 1.07996 * 120.00537 * 180.27260 * 24 23 22 40 40 H 1.07994 * 120.00130 * 179.83984 * 25 24 23 41 41 H 1.08005 * 119.99565 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.00605 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 0.0053 10 6 2.2400 -3.6596 -0.1221 11 1 2.9961 -3.5800 0.6587 12 7 2.8869 -3.6079 -1.4356 13 16 4.4600 -4.0973 -1.6034 14 8 4.5021 -5.3668 -0.9664 15 8 4.7211 -3.9666 -2.9941 16 6 5.4163 -2.8791 -0.6590 17 1 5.0374 -2.8047 0.3603 18 6 6.9152 -3.2539 -0.6534 19 6 7.6037 -2.0580 -1.3480 20 8 6.6969 -0.9499 -1.1598 21 6 5.3764 -1.5012 -1.3563 22 6 1.5029 -4.9660 0.0237 23 6 0.8485 -5.5154 -1.0629 24 6 0.1761 -6.7159 -0.9303 25 6 0.1505 -7.3625 0.2914 26 6 0.8006 -6.8104 1.3792 27 6 1.4766 -5.6120 1.2455 28 1 -0.4849 0.8401 0.0004 29 1 0.6970 -2.5947 0.9391 30 1 0.5554 -2.5207 -0.8336 31 1 2.3938 -3.2871 -2.2068 32 1 7.2780 -3.3624 0.3687 33 1 7.0817 -4.1709 -1.2185 34 1 8.5637 -1.8470 -0.8769 35 1 7.7399 -2.2631 -2.4099 36 1 5.1692 -1.6200 -2.4197 37 1 4.6255 -0.8623 -0.8916 38 1 0.8649 -5.0082 -2.0162 39 1 -0.3316 -7.1473 -1.7803 40 1 -0.3770 -8.2990 0.3957 41 1 0.7810 -7.3157 2.3336 42 1 1.9845 -5.1808 2.0955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269748470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:48 Heat of formation + Delta-G solvation = -117.892864 kcal Electronic energy + Delta-G solvation = -26694.712059 eV Core-core repulsion = 22958.687794 eV Total energy + Delta-G solvation = -3736.024265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.33184 -40.28523 -38.24220 -37.24093 -37.09431 -34.63273 -33.48066 -32.00444 -31.54155 -30.38986 -30.26524 -26.53676 -24.34233 -23.77243 -23.36813 -22.93081 -21.65379 -20.21514 -19.13726 -18.64137 -18.02624 -17.64498 -17.44413 -17.14988 -16.48088 -16.28076 -16.11222 -15.97349 -15.68618 -15.03995 -14.67698 -14.50395 -14.28468 -14.16664 -13.96029 -13.68930 -13.54087 -13.31050 -13.17700 -13.11026 -12.98722 -12.83783 -12.52583 -12.47105 -12.42484 -12.32652 -12.10751 -11.83538 -11.71712 -11.45587 -11.17722 -10.90872 -10.53068 -10.30791 -9.69528 -9.45896 -8.13790 -6.21505 -0.81678 0.57366 0.62468 1.41818 1.46126 1.51989 1.68762 2.42777 2.61687 2.74091 3.01020 3.07276 3.20471 3.23229 3.67625 3.81167 3.98514 4.01054 4.03472 4.12758 4.21334 4.27641 4.37854 4.43633 4.54078 4.63040 4.68075 4.72845 4.74264 4.83647 4.87649 4.92168 5.20961 5.26839 5.52712 5.59905 5.62509 5.66980 5.70335 5.85709 5.93506 6.15409 6.23111 6.27592 6.92996 7.46471 8.97420 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.006743 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.228326 B = 4151.159334 C = 6478.702329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.013 3.987 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.207 3.793 11 H 0.089 0.911 12 N -1.094 6.094 13 S 2.628 3.372 14 O -0.971 6.971 15 O -0.983 6.983 16 C -0.626 4.626 17 H 0.162 0.838 18 C -0.131 4.131 19 C 0.033 3.967 20 O -0.382 6.382 21 C 0.065 3.935 22 C -0.101 4.101 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.260 0.740 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.420 0.580 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -10.370 0.182 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.186 4.186 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.003 4.003 10 C 0.099 3.901 11 H 0.107 0.893 12 N -0.852 5.852 13 S 2.721 3.279 14 O -0.962 6.962 15 O -0.973 6.973 16 C -0.737 4.737 17 H 0.180 0.820 18 C -0.170 4.170 19 C -0.044 4.044 20 O -0.301 6.301 21 C -0.013 4.013 22 C -0.102 4.102 23 C -0.145 4.145 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.149 4.149 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.255 0.745 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.884 -10.846 -0.099 14.674 hybrid contribution -0.432 1.721 -0.014 1.774 sum 9.452 -9.125 -0.113 13.138 Atomic orbital electron populations 1.70075 1.07525 1.27267 1.52024 1.25672 0.95307 1.02181 0.95424 0.85914 0.79265 0.80401 0.78411 1.20192 1.21790 1.18298 1.21614 0.93952 0.90837 1.49412 0.90361 1.19193 0.93628 0.91186 0.96306 1.19707 0.95450 0.91963 0.82933 0.89312 1.55269 1.29585 1.83285 1.17052 1.04413 0.73829 0.75466 0.74191 1.93580 1.86098 1.38130 1.78345 1.93540 1.84888 1.87729 1.31158 1.31909 1.11148 1.13846 1.16793 0.82041 1.22875 0.88541 0.99896 1.05666 1.23785 0.94920 0.84535 1.01137 1.89124 1.15867 1.32949 1.92160 1.23262 0.87257 0.91091 0.99661 1.20522 0.98530 0.96493 0.94693 1.21108 0.98012 0.96701 0.98688 1.21426 0.99486 0.95198 0.98887 1.21455 0.99968 1.00865 0.92713 1.21421 0.97379 0.95452 0.99985 1.21254 1.00487 0.96200 0.96929 0.93151 0.97608 0.97327 0.74451 0.86219 0.89383 0.85516 0.90705 0.90592 0.87404 0.86577 0.84314 0.83495 0.83586 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.42 13.29 21.45 0.28 -52.13 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.93 41.12 29.54 68.60 2.03 43.14 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.52 -24.94 8.85 25.60 0.23 -24.71 16 8 H 0.08 3.37 5.49 -2.91 -0.02 3.36 16 9 C 0.04 1.61 4.55 29.85 0.14 1.74 16 10 C 0.21 7.50 2.20 44.25 0.10 7.60 16 11 H 0.09 2.95 7.09 -2.39 -0.02 2.93 16 12 N -1.09 -36.65 4.30 -172.52 -0.74 -37.39 16 13 S 2.63 81.89 4.69 -56.49 -0.26 81.63 16 14 O -0.97 -34.17 17.64 -127.65 -2.25 -36.42 16 15 O -0.98 -34.31 17.26 -127.65 -2.20 -36.51 16 16 C -0.63 -16.70 3.69 31.61 0.12 -16.58 16 17 H 0.16 3.99 7.43 -2.39 -0.02 3.97 16 18 C -0.13 -2.71 6.76 31.61 0.21 -2.50 16 19 C 0.03 0.69 7.63 72.49 0.55 1.24 16 20 O -0.38 -11.29 11.65 -148.98 -1.74 -13.02 16 21 C 0.07 1.96 7.14 72.48 0.52 2.48 16 22 C -0.10 -3.55 4.82 -19.87 -0.10 -3.64 16 23 C -0.13 -4.28 9.32 22.27 0.21 -4.07 16 24 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 25 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 26 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 27 C -0.13 -4.12 9.67 22.27 0.22 -3.90 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.42 13.82 8.60 -96.75 -0.83 12.99 16 32 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 1.61 7.67 -2.39 -0.02 1.59 16 34 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 2.25 7.19 -2.39 -0.02 2.23 16 37 H 0.11 3.59 5.96 -2.39 -0.01 3.57 16 38 H 0.12 3.80 7.50 -2.91 -0.02 3.78 16 39 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 40 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.13 3.67 8.05 -2.91 -0.02 3.65 16 Total: -1.00 -68.08 358.11 -1.36 -69.45 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.20 Total: 32.32 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.32 Total: -51.06 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -0.46 Total: -89.53 kcal Atomic # 8 Polarization: -79.76 SS G_CDS: -6.19 Total: -85.95 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 81.89 SS G_CDS: -0.26 Total: 81.63 kcal Total: -68.08 -1.36 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269748470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.448 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds