Wall clock time and date at job start Tue Mar 31 2020 14:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40084 * 126.03495 * 2 1 4 4 C 1.30830 * 108.23819 * 179.75528 * 3 2 1 5 5 C 1.50702 * 125.89321 * 180.25407 * 4 3 2 6 6 F 1.39896 * 109.47292 * 270.21652 * 5 4 3 7 7 F 1.39903 * 109.47033 * 30.21616 * 5 4 3 8 8 F 1.39898 * 109.47170 * 150.21333 * 5 4 3 9 9 C 1.39865 * 108.21864 * 0.43914 * 4 3 2 10 10 C 1.50703 * 126.05020 * 179.81850 * 9 4 3 11 11 N 1.46899 * 109.47107 * 269.71325 * 10 9 4 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47071 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99780 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99793 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00014 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47121 * 60.00049 * 19 17 15 21 21 H 1.48506 * 109.47165 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47240 * 300.00130 * 19 17 15 23 23 C 1.34987 * 126.03962 * 180.02562 * 2 1 3 24 24 Cl 1.73595 * 126.14065 * 359.94470 * 23 2 1 25 25 H 1.09001 * 109.46612 * 269.95763 * 1 2 3 26 26 H 1.08995 * 109.47202 * 29.95768 * 1 2 3 27 27 H 1.08997 * 109.46707 * 149.96202 * 1 2 3 28 28 H 1.09002 * 109.47152 * 149.71412 * 10 9 4 29 29 H 1.09001 * 109.46980 * 29.71513 * 10 9 4 30 30 H 1.00902 * 111.00582 * 303.95889 * 11 10 9 31 31 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 32 32 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 33 33 H 1.09005 * 109.47424 * 300.00229 * 13 12 11 34 34 H 1.09004 * 109.47266 * 59.99979 * 13 12 11 35 35 H 1.08995 * 109.47051 * 300.00167 * 14 13 12 36 36 H 1.09003 * 109.46901 * 60.00330 * 14 13 12 37 37 H 0.97005 * 119.99618 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7329 0.0053 5 6 4.7491 1.6253 0.0127 6 9 5.1283 1.9078 -1.3040 7 9 4.4467 2.8188 0.6771 8 9 5.7996 0.9779 0.6719 9 6 3.5451 -0.6657 -0.0013 10 6 4.7700 -1.5435 -0.0023 11 7 5.1676 -1.8278 -1.3876 12 6 6.3616 -2.6827 -1.4277 13 6 6.7447 -2.9557 -2.8836 14 6 7.9878 -3.8466 -2.9254 15 6 8.3648 -4.1160 -4.3595 16 1 7.7762 -3.6944 -5.1608 17 6 9.4603 -4.9016 -4.6483 18 7 10.1761 -5.4163 -3.6724 19 14 9.9271 -5.2362 -6.4258 20 1 10.2161 -3.9513 -7.1120 21 1 11.1338 -6.1008 -6.4664 22 1 8.8029 -5.9220 -7.1122 23 6 2.2592 -1.0915 -0.0005 24 17 1.7279 -2.7442 0.0001 25 1 -0.3632 -0.0008 1.0277 26 1 -0.3633 0.8903 -0.5131 27 1 -0.3633 -0.8896 -0.5144 28 1 4.5471 -2.4789 0.5110 29 1 5.5839 -1.0321 0.5117 30 1 4.4072 -2.2437 -1.9040 31 1 7.1864 -2.1788 -0.9238 32 1 6.1500 -3.6260 -0.9242 33 1 5.9200 -3.4594 -3.3880 34 1 6.9563 -2.0121 -3.3867 35 1 8.8126 -3.3433 -2.4210 36 1 7.7757 -4.7901 -2.4225 37 1 10.9471 -5.9688 -3.8757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272934731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:00 Heat of formation + Delta-G solvation = -105.560907 kcal Electronic energy + Delta-G solvation = -25191.004567 eV Core-core repulsion = 20808.074266 eV Total energy + Delta-G solvation = -4382.930301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.26351 -48.80908 -48.73663 -42.85796 -38.18794 -37.87010 -35.73764 -34.87361 -33.40394 -31.55244 -29.69354 -28.42265 -26.78869 -25.17685 -23.78915 -22.52637 -22.20971 -21.70426 -19.63684 -19.35958 -19.19256 -18.45305 -17.61938 -17.16349 -16.86877 -16.52844 -16.00914 -15.69841 -15.64192 -15.50094 -15.32634 -15.15321 -14.95010 -14.88335 -14.78364 -14.32307 -13.97033 -13.83649 -13.66699 -13.46122 -13.32106 -13.22746 -12.87660 -12.72328 -12.57939 -12.41940 -12.27548 -12.09912 -11.47693 -11.36444 -11.11224 -10.80851 -10.51630 -9.96429 -9.33983 -8.17213 -6.27839 0.05337 0.07662 0.74998 0.91855 1.41500 1.44798 1.52589 1.73644 2.43308 2.46121 2.78606 3.15828 3.21582 3.33094 3.51466 3.62099 3.98403 4.16369 4.27703 4.30790 4.39740 4.54164 4.56998 4.69257 4.77390 4.81976 5.03385 5.15542 5.28931 5.30749 5.55413 5.80382 5.84203 5.89974 6.02513 6.30549 6.45188 6.89086 7.41064 8.94461 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.002925 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.496729 B = 9571.593751 C =10754.168118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.336 5.336 3 N -0.233 5.233 4 C -0.006 4.006 5 C 0.561 3.439 6 F -0.168 7.168 7 F -0.169 7.169 8 F -0.160 7.160 9 C -0.176 4.176 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.074 3.926 13 C -0.092 4.092 14 C 0.026 3.974 15 C -0.544 4.544 16 H 0.058 0.942 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.266 1.266 23 C 0.133 3.867 24 Cl 0.036 6.964 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.342 0.658 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.049 0.951 35 H -0.008 1.008 36 H -0.007 1.007 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.687 11.544 11.902 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.121 5.121 3 N -0.059 5.059 4 C -0.172 4.172 5 C 0.504 3.496 6 F -0.149 7.149 7 F -0.150 7.150 8 F -0.141 7.141 9 C -0.188 4.188 10 C -0.011 4.011 11 N -0.317 5.317 12 C -0.055 4.055 13 C -0.130 4.130 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.022 4.022 24 Cl 0.064 6.936 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.010 0.990 36 H 0.012 0.988 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.164 12.891 11.877 29.852 hybrid contribution 0.799 -1.806 -0.503 2.038 sum -23.365 11.085 11.375 28.252 Atomic orbital electron populations 1.22643 0.69596 1.07315 1.06496 1.48994 1.08641 1.00869 1.53618 1.77447 0.99777 1.07170 1.21510 1.21737 0.93072 0.93886 1.08473 1.16781 0.81149 0.77437 0.74216 1.93268 1.91956 1.93681 1.36023 1.93226 1.93091 1.47952 1.80780 1.93185 1.59053 1.80959 1.80953 1.19339 0.94116 0.91798 1.13588 1.20488 0.93028 0.96982 0.90614 1.60492 1.08051 1.50431 1.12764 1.21838 0.92407 0.94225 0.97016 1.21370 0.97549 0.98917 0.95196 1.18959 0.92982 0.93810 0.95399 1.21688 1.12039 1.30601 0.93833 0.92347 1.25970 0.96323 0.95592 1.01950 1.70093 1.18728 1.34775 1.33783 0.85524 0.77759 0.78393 0.79512 1.19332 1.20796 1.19091 1.21475 0.90281 0.84932 1.05530 1.98458 1.89994 1.08478 1.96686 0.87360 0.86752 0.86704 0.92445 0.88906 0.83964 0.91719 0.95030 0.93056 0.93172 0.99007 0.98815 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 11.31 127.77 1.44 1.95 16 2 N -0.34 -5.66 4.01 -359.28 -1.44 -7.10 16 3 N -0.23 -5.27 12.51 -47.39 -0.59 -5.86 16 4 C -0.01 -0.16 6.56 43.10 0.28 0.12 16 5 C 0.56 14.25 3.50 71.24 0.25 14.50 16 6 F -0.17 -4.74 17.30 44.97 0.78 -3.96 16 7 F -0.17 -4.12 17.25 44.97 0.78 -3.35 16 8 F -0.16 -4.10 14.67 44.97 0.66 -3.44 16 9 C -0.18 -4.03 5.57 -20.11 -0.11 -4.15 16 10 C 0.12 2.89 5.72 85.56 0.49 3.38 16 11 N -0.69 -19.77 6.49 -517.92 -3.36 -23.13 16 12 C 0.07 2.52 5.69 86.30 0.49 3.02 16 13 C -0.09 -3.87 5.41 30.59 0.17 -3.70 16 14 C 0.03 1.40 4.97 29.85 0.15 1.55 16 15 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 18 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 19 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.13 2.48 7.45 83.57 0.62 3.10 16 24 Cl 0.04 0.52 28.34 -2.72 -0.08 0.45 16 25 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.11 0.36 7.81 -2.39 -0.02 0.34 16 28 H 0.06 1.26 7.91 -2.39 -0.02 1.25 16 29 H 0.09 2.36 5.76 -2.39 -0.01 2.35 16 30 H 0.34 9.22 8.72 -89.69 -0.78 8.44 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -68.92 346.85 3.87 -65.05 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 0.34 Total: 2.85 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 4.48 Total: -11.17 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -5.11 Total: -93.35 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 2.21 Total: -10.75 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.45 kcal Total: -68.92 3.87 -65.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272934731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.508 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds