Wall clock time and date at job start Tue Mar 31 2020 14:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48491 * 109.47452 * 270.00453 * 3 2 1 5 5 H 1.48508 * 109.46865 * 30.00858 * 3 2 1 6 6 H 1.48502 * 109.46847 * 149.99920 * 3 2 1 7 7 C 1.37873 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00315 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99976 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47169 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47414 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.53857 * 68.37341 * 12 11 10 14 14 O 1.42099 * 110.54434 * 291.62530 * 12 11 10 15 15 N 1.65597 * 104.44839 * 179.97438 * 12 11 10 16 16 C 1.46912 * 120.54057 * 262.23133 * 15 12 11 17 17 C 1.53434 * 107.79780 * 224.69431 * 16 15 12 18 18 H 1.09002 * 109.57619 * 176.99915 * 17 16 15 19 19 O 1.42893 * 109.57778 * 56.61309 * 17 16 15 20 20 C 1.52859 * 108.84227 * 296.80499 * 17 16 15 21 21 C 1.50588 * 110.49009 * 51.33513 * 20 17 16 22 22 C 1.38501 * 118.94102 * 159.39940 * 21 20 17 23 23 C 1.38120 * 120.31246 * 179.88652 * 22 21 20 24 24 C 1.38306 * 120.16286 * 359.93567 * 23 22 21 25 25 C 1.38027 * 119.90766 * 0.07591 * 24 23 22 26 26 C 1.38608 * 121.50213 * 339.34865 * 21 20 17 27 27 H 0.96994 * 119.99568 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47239 * 60.00146 * 9 7 2 29 29 H 1.09001 * 109.46956 * 299.99691 * 9 7 2 30 30 H 1.09001 * 109.47671 * 60.00099 * 10 9 7 31 31 H 1.09001 * 109.46852 * 299.99540 * 10 9 7 32 32 H 1.08999 * 109.47227 * 59.99818 * 11 10 9 33 33 H 1.08999 * 109.47139 * 299.99869 * 11 10 9 34 34 H 1.09005 * 109.78820 * 105.12330 * 16 15 12 35 35 H 1.08999 * 109.80401 * 344.26801 * 16 15 12 36 36 H 0.96700 * 114.00339 * 180.63955 * 19 17 16 37 37 H 1.08998 * 109.30058 * 171.64609 * 20 17 16 38 38 H 1.09007 * 109.30064 * 291.22885 * 20 17 16 39 39 H 1.08007 * 119.84455 * 359.86256 * 22 21 20 40 40 H 1.08003 * 119.92158 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.04832 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.98377 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 16 6.1563 -4.3468 -0.0028 13 8 5.8602 -4.9799 -1.2401 14 8 5.8602 -4.9809 1.2339 15 7 7.8059 -4.2018 -0.0035 16 6 8.5641 -4.3065 -1.2575 17 6 9.7803 -5.2048 -0.9966 18 1 10.3358 -5.3458 -1.9238 19 8 9.3424 -6.4714 -0.5006 20 6 10.6782 -4.5311 0.0409 21 6 9.8766 -4.1309 1.2514 22 6 10.5362 -3.9111 2.4492 23 6 9.8292 -3.5407 3.5765 24 6 8.4563 -3.3855 3.5159 25 6 7.7909 -3.6028 2.3263 26 6 8.5004 -3.9781 1.1905 27 1 -0.4849 0.8400 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6800 -0.8912 30 1 3.6579 -3.1498 -0.8925 31 1 3.6586 -3.1509 0.8876 32 1 5.9149 -2.1234 0.8882 33 1 5.9150 -2.1220 -0.8918 34 1 8.8966 -3.3170 -1.5714 35 1 7.9376 -4.7492 -2.0319 36 1 10.0618 -7.0870 -0.3045 37 1 11.4636 -5.2242 0.3421 38 1 11.1311 -3.6419 -0.3976 39 1 11.6084 -4.0302 2.5022 40 1 10.3499 -3.3713 4.5075 41 1 7.9054 -3.0954 4.3984 42 1 6.7188 -3.4823 2.2777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278714311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:25 Heat of formation + Delta-G solvation = -93.626899 kcal Electronic energy + Delta-G solvation = -26096.907963 eV Core-core repulsion = 22361.935950 eV Total energy + Delta-G solvation = -3734.972014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56380 -37.88343 -37.00934 -35.97757 -35.57182 -34.87460 -33.08560 -32.24497 -30.39820 -29.56412 -28.44309 -25.67687 -23.80710 -23.34356 -22.83368 -20.52369 -20.36081 -19.18975 -17.89351 -17.52428 -17.17515 -16.95106 -16.13850 -15.88469 -15.68224 -15.16747 -14.73865 -14.42243 -14.38140 -14.25769 -14.14872 -13.82708 -13.35641 -12.95684 -12.89953 -12.48312 -12.40619 -12.23192 -12.16665 -12.02968 -11.87965 -11.64175 -11.60404 -11.46382 -11.07697 -10.97753 -10.83569 -10.58535 -10.28118 -10.12234 -9.89101 -9.61994 -9.28915 -8.89663 -8.60272 -8.08404 -6.09881 -4.09469 0.15959 1.21567 1.30830 2.43730 3.25506 3.33306 3.35289 3.57106 3.75553 3.87808 4.06971 4.30629 4.37527 4.38992 4.51602 4.59937 4.74507 4.89112 4.94791 5.00715 5.05208 5.12767 5.19281 5.23577 5.34987 5.39952 5.45028 5.49690 5.67591 5.71107 5.88541 6.07081 6.12716 6.20544 6.38698 6.41017 6.47391 6.61902 6.91427 7.09196 7.23222 7.34850 7.68779 8.45733 8.94283 9.51024 11.03375 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.003562 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.891751 B = 7859.637839 C = 8556.435306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.615 4.615 12 S 2.591 3.409 13 O -0.946 6.946 14 O -0.940 6.940 15 N -0.932 5.932 16 C 0.109 3.891 17 C 0.094 3.906 18 H 0.076 0.924 19 O -0.553 6.553 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.151 4.151 24 C -0.080 4.080 25 C -0.171 4.171 26 C 0.198 3.802 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.377 0.623 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.299 -7.850 1.129 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.690 3.310 13 O -0.936 6.936 14 O -0.931 6.931 15 N -0.754 5.754 16 C -0.015 4.015 17 C 0.034 3.966 18 H 0.093 0.907 19 O -0.358 6.358 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.170 4.170 24 C -0.099 4.099 25 C -0.192 4.192 26 C 0.101 3.899 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.224 0.776 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 26.032 -8.323 0.932 27.346 hybrid contribution 1.093 1.385 0.084 1.766 sum 27.125 -6.939 1.016 28.017 Atomic orbital electron populations 1.69911 1.06279 1.27008 1.50612 1.25017 0.94755 0.99151 0.94417 0.86787 0.80359 0.83641 0.78560 1.20198 1.21210 1.19028 1.21121 0.89163 0.94817 1.51468 0.90687 1.19533 0.97392 0.90483 0.96832 1.21347 0.86157 1.03189 1.02967 1.30701 1.09738 1.22605 1.11647 1.05882 0.72071 0.78454 0.74608 1.93567 1.81840 1.73242 1.44974 1.93607 1.82037 1.73038 1.44369 1.55827 1.25591 1.82894 1.11071 1.21887 0.93978 0.99916 0.85720 1.21993 0.94466 0.84482 0.95671 0.90654 1.86628 1.37148 1.24517 1.87474 1.21114 0.97575 1.01481 0.94204 1.19187 0.91717 1.05262 0.95963 1.20861 0.99395 0.98993 0.91795 1.20997 0.94318 1.03204 0.98475 1.20930 0.94333 0.97604 0.97014 1.21294 1.00808 1.04334 0.92793 1.17220 0.91575 0.96193 0.84938 0.92591 0.96060 0.96548 0.90855 0.90817 0.85067 0.85058 0.89064 0.86770 0.77553 0.90039 0.89631 0.86037 0.85999 0.85291 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.87 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 11 C -0.62 -9.25 5.98 37.16 0.22 -9.03 16 12 S 2.59 40.85 4.81 -107.50 -0.52 40.33 16 13 O -0.95 -16.96 16.39 -57.54 -0.94 -17.91 16 14 O -0.94 -17.32 15.04 -57.54 -0.87 -18.19 16 15 N -0.93 -12.13 2.96 -58.09 -0.17 -12.30 16 16 C 0.11 1.10 6.19 -3.59 -0.02 1.08 16 17 C 0.09 0.77 3.82 -26.58 -0.10 0.67 16 18 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 19 O -0.55 -5.74 12.86 -35.23 -0.45 -6.19 16 20 C -0.11 -0.76 5.44 -28.01 -0.15 -0.91 16 21 C -0.12 -1.23 5.63 -104.44 -0.59 -1.81 16 22 C -0.09 -0.85 9.66 -39.53 -0.38 -1.23 16 23 C -0.15 -1.46 10.04 -39.60 -0.40 -1.86 16 24 C -0.08 -0.92 10.05 -39.63 -0.40 -1.31 16 25 C -0.17 -2.32 8.32 -39.35 -0.33 -2.65 16 26 C 0.20 2.56 6.15 -83.72 -0.51 2.05 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.13 1.75 7.09 -51.92 -0.37 1.38 16 33 H 0.13 1.67 8.14 -51.92 -0.42 1.24 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 1.22 6.69 -51.93 -0.35 0.88 16 36 H 0.38 2.17 9.08 45.56 0.41 2.58 16 37 H 0.08 0.43 8.12 -51.93 -0.42 0.00 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.14 1.92 4.60 -52.49 -0.24 1.68 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -37.41 349.53 -10.04 -47.45 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.12 Total: 2.42 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -3.34 Total: -30.70 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.60 Total: -39.18 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.26 Total: -42.28 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 40.85 SS G_CDS: -0.52 Total: 40.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.41 -10.04 -47.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278714311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.176 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds