Wall clock time and date at job start Tue Mar 31 2020 14:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48501 * 109.47126 * 270.00126 * 3 2 1 5 5 H 1.48498 * 109.47084 * 30.00335 * 3 2 1 6 6 H 1.48498 * 109.47229 * 150.00117 * 3 2 1 7 7 C 1.37874 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99978 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00409 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47008 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.46937 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54513 * 68.37365 * 12 11 10 14 14 O 1.42102 * 110.54191 * 291.62209 * 12 11 10 15 15 N 1.65608 * 104.44741 * 179.97438 * 12 11 10 16 16 C 1.46529 * 124.95691 * 269.71950 * 15 12 11 17 17 C 1.53748 * 105.18615 * 179.86296 * 16 15 12 18 18 H 1.08999 * 110.62673 * 241.51457 * 17 16 15 19 19 C 1.52998 * 110.21536 * 119.04468 * 17 16 15 20 20 O 1.42904 * 109.47203 * 178.55411 * 19 17 16 21 21 C 1.51214 * 104.53334 * 0.38437 * 17 16 15 22 22 C 1.38182 * 130.97950 * 179.75940 * 21 17 16 23 23 C 1.38227 * 120.14810 * 179.97438 * 22 21 17 24 24 C 1.38295 * 119.83610 * 359.97438 * 23 22 21 25 25 C 1.37836 * 120.23105 * 0.02562 * 24 23 22 26 26 C 1.38597 * 108.54338 * 359.75109 * 21 17 16 27 27 H 0.96999 * 119.99678 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46534 * 60.00690 * 9 7 2 29 29 H 1.08996 * 109.47069 * 300.00604 * 9 7 2 30 30 H 1.09008 * 109.46625 * 60.00287 * 10 9 7 31 31 H 1.09000 * 109.47210 * 300.00728 * 10 9 7 32 32 H 1.09000 * 109.47698 * 60.00135 * 11 10 9 33 33 H 1.09000 * 109.47377 * 300.00194 * 11 10 9 34 34 H 1.09007 * 110.29914 * 298.93336 * 16 15 12 35 35 H 1.08997 * 110.30011 * 61.06828 * 16 15 12 36 36 H 1.09002 * 109.47062 * 298.55109 * 19 17 16 37 37 H 1.09003 * 109.47538 * 58.55305 * 19 17 16 38 38 H 0.96698 * 113.99530 * 180.02562 * 20 19 17 39 39 H 1.07995 * 119.92126 * 359.97281 * 22 21 17 40 40 H 1.08007 * 120.07868 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.88558 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.85862 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5514 -2.6366 0.0001 12 16 6.1560 -4.3470 -0.0005 13 8 5.8599 -4.9801 -1.2376 14 8 5.8599 -4.9810 1.2363 15 7 7.8058 -4.2020 -0.0011 16 6 8.6421 -4.1341 -1.2023 17 6 10.0831 -4.0015 -0.6828 18 1 10.5267 -3.0634 -1.0164 19 6 10.9259 -5.1889 -1.1527 20 8 12.2688 -5.0327 -0.6897 21 6 9.9463 -4.0146 0.8231 22 6 10.8992 -3.9315 1.8203 23 6 10.5186 -3.9653 3.1487 24 6 9.1806 -4.0821 3.4784 25 6 8.2264 -4.1653 2.4872 26 6 8.6028 -4.1327 1.1426 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.6798 0.8896 29 1 3.8746 -0.6808 -0.8904 30 1 3.6578 -3.1506 -0.8898 31 1 3.6584 -3.1503 0.8902 32 1 5.9148 -2.1228 0.8901 33 1 5.9148 -2.1228 -0.8898 34 1 8.5325 -5.0447 -1.7914 35 1 8.3759 -3.2621 -1.7997 36 1 10.5083 -6.1123 -0.7512 37 1 10.9196 -5.2306 -2.2419 38 1 12.8610 -5.7508 -0.9516 39 1 11.9436 -3.8399 1.5612 40 1 11.2644 -3.9007 3.9273 41 1 8.8823 -4.1082 4.5160 42 1 7.1831 -4.2559 2.7515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292530055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:08 Heat of formation + Delta-G solvation = -94.049581 kcal Electronic energy + Delta-G solvation = -25521.994660 eV Core-core repulsion = 21787.004317 eV Total energy + Delta-G solvation = -3734.990343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87462 -37.49717 -37.09646 -36.48495 -36.03012 -34.90173 -32.78951 -32.26837 -29.79042 -29.69470 -28.46405 -25.78050 -23.75339 -23.23072 -22.37784 -20.99581 -20.47538 -19.29625 -17.87589 -17.72049 -17.05584 -16.65946 -16.49349 -16.10809 -15.69699 -15.56649 -14.80556 -14.66412 -14.45524 -14.24027 -13.89553 -13.56138 -13.01662 -12.90774 -12.85664 -12.70965 -12.42360 -12.26176 -12.13006 -12.05763 -11.98772 -11.94829 -11.67857 -11.55304 -11.10360 -10.99340 -10.90254 -10.74270 -10.30812 -10.15082 -9.91336 -9.67749 -9.31255 -8.92252 -8.62087 -8.07657 -6.11713 -4.11480 0.05882 1.23550 1.31153 2.35318 3.24362 3.32379 3.34258 3.52610 3.62550 3.79048 3.92005 4.07163 4.33616 4.37485 4.61648 4.75460 4.83614 4.91259 4.93798 4.97288 5.03274 5.08233 5.14143 5.21765 5.29403 5.37752 5.44316 5.63933 5.66381 5.72944 5.97477 6.05343 6.16017 6.17326 6.30853 6.45092 6.50330 6.59039 6.90949 7.06718 7.20771 7.21385 7.66735 8.43549 8.92159 9.49163 11.01495 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.003128 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.822366 B = 8950.256694 C = 9215.832357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.609 4.609 12 S 2.598 3.402 13 O -0.945 6.945 14 O -0.941 6.941 15 N -0.943 5.943 16 C 0.120 3.880 17 C -0.051 4.051 18 H 0.103 0.897 19 C 0.088 3.912 20 O -0.568 6.568 21 C -0.128 4.128 22 C -0.062 4.062 23 C -0.152 4.152 24 C -0.084 4.084 25 C -0.155 4.155 26 C 0.164 3.836 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.380 0.620 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.721 -9.183 0.336 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.137 4.137 11 C -0.741 4.741 12 S 2.697 3.303 13 O -0.936 6.936 14 O -0.931 6.931 15 N -0.764 5.764 16 C -0.005 4.005 17 C -0.070 4.070 18 H 0.121 0.879 19 C 0.010 3.990 20 O -0.374 6.374 21 C -0.133 4.133 22 C -0.080 4.080 23 C -0.171 4.171 24 C -0.103 4.103 25 C -0.176 4.176 26 C 0.067 3.933 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.227 0.773 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 25.688 -9.389 0.467 27.355 hybrid contribution 0.617 1.101 -0.349 1.309 sum 26.305 -8.288 0.118 27.580 Atomic orbital electron populations 1.69906 1.06285 1.27041 1.50542 1.25017 0.94761 0.99173 0.94390 0.86784 0.80358 0.83615 0.78570 1.20188 1.21190 1.19032 1.21113 0.89140 0.94815 1.51564 0.90692 1.19531 0.97410 0.90448 0.96846 1.21352 0.86123 1.03247 1.02959 1.30595 1.09641 1.22216 1.11632 1.05720 0.71304 0.78696 0.74603 1.93591 1.81704 1.73250 1.45018 1.93576 1.81681 1.73239 1.44617 1.56504 1.24829 1.84546 1.10554 1.21845 0.88551 1.03752 0.86333 1.20650 0.94044 1.00102 0.92210 0.87893 1.22178 0.82560 0.96959 0.97350 1.86454 1.20317 1.50924 1.79695 1.19902 0.92214 1.06776 0.94405 1.20458 0.98948 0.97370 0.91268 1.21041 0.96110 1.04047 0.95944 1.20898 0.92586 0.97869 0.98948 1.21052 1.02068 1.05167 0.89342 1.18082 0.90421 0.97837 0.86977 0.92566 0.96057 0.96552 0.90859 0.90773 0.84992 0.85142 0.89133 0.89275 0.93149 0.92812 0.77281 0.85369 0.85790 0.85332 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 9 C 0.00 -0.08 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.86 5.16 -26.74 -0.14 -2.00 16 11 C -0.61 -8.83 6.18 37.15 0.23 -8.60 16 12 S 2.60 38.06 5.56 -107.50 -0.60 37.46 16 13 O -0.95 -15.87 17.55 -57.54 -1.01 -16.88 16 14 O -0.94 -15.96 15.26 -57.54 -0.88 -16.84 16 15 N -0.94 -11.61 3.40 -58.12 -0.20 -11.81 16 16 C 0.12 1.13 6.72 -3.64 -0.02 1.11 16 17 C -0.05 -0.45 3.34 -91.13 -0.30 -0.75 16 18 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 19 C 0.09 0.63 6.24 37.16 0.23 0.86 16 20 O -0.57 -3.97 12.60 -35.23 -0.44 -4.41 16 21 C -0.13 -1.42 5.51 -104.26 -0.57 -2.00 16 22 C -0.06 -0.63 9.59 -39.61 -0.38 -1.01 16 23 C -0.15 -1.47 10.06 -39.56 -0.40 -1.86 16 24 C -0.08 -0.90 10.02 -39.71 -0.40 -1.30 16 25 C -0.15 -1.99 9.37 -39.19 -0.37 -2.35 16 26 C 0.16 2.08 6.59 -83.67 -0.55 1.53 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 30 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 33 H 0.13 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.38 1.03 9.12 45.56 0.42 1.45 16 39 H 0.13 1.15 7.54 -52.49 -0.40 0.76 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 1.96 6.11 -52.48 -0.32 1.64 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -36.08 357.29 -10.14 -46.22 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.28 Total: 0.97 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -3.22 Total: -29.96 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.58 Total: -38.58 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -2.33 Total: -38.14 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 38.06 SS G_CDS: -0.60 Total: 37.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.08 -10.14 -46.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292530055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.833 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds