Wall clock time and date at job start Tue Mar 31 2020 14:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48501 * 109.47126 * 270.00126 * 3 2 1 5 5 H 1.48498 * 109.47084 * 30.00335 * 3 2 1 6 6 H 1.48498 * 109.47229 * 150.00117 * 3 2 1 7 7 C 1.37874 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99978 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00409 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47008 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.46937 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54513 * 68.37365 * 12 11 10 14 14 O 1.42102 * 110.54191 * 291.62209 * 12 11 10 15 15 N 1.65608 * 104.44741 * 179.97438 * 12 11 10 16 16 C 1.46529 * 124.95691 * 269.71950 * 15 12 11 17 17 C 1.53748 * 105.18615 * 179.86296 * 16 15 12 18 18 H 1.08999 * 110.62673 * 241.51457 * 17 16 15 19 19 C 1.52998 * 110.21536 * 119.04468 * 17 16 15 20 20 O 1.42904 * 109.47203 * 178.55411 * 19 17 16 21 21 C 1.51214 * 104.53334 * 0.38437 * 17 16 15 22 22 C 1.38182 * 130.97950 * 179.75940 * 21 17 16 23 23 C 1.38227 * 120.14810 * 179.97438 * 22 21 17 24 24 C 1.38295 * 119.83610 * 359.97438 * 23 22 21 25 25 C 1.37836 * 120.23105 * 0.02562 * 24 23 22 26 26 C 1.38597 * 108.54338 * 359.75109 * 21 17 16 27 27 H 0.96999 * 119.99678 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46534 * 60.00690 * 9 7 2 29 29 H 1.08996 * 109.47069 * 300.00604 * 9 7 2 30 30 H 1.09008 * 109.46625 * 60.00287 * 10 9 7 31 31 H 1.09000 * 109.47210 * 300.00728 * 10 9 7 32 32 H 1.09000 * 109.47698 * 60.00135 * 11 10 9 33 33 H 1.09000 * 109.47377 * 300.00194 * 11 10 9 34 34 H 1.09007 * 110.29914 * 298.93336 * 16 15 12 35 35 H 1.08997 * 110.30011 * 61.06828 * 16 15 12 36 36 H 1.09002 * 109.47062 * 298.55109 * 19 17 16 37 37 H 1.09003 * 109.47538 * 58.55305 * 19 17 16 38 38 H 0.96698 * 113.99530 * 180.02562 * 20 19 17 39 39 H 1.07995 * 119.92126 * 359.97281 * 22 21 17 40 40 H 1.08007 * 120.07868 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.88558 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.85862 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5514 -2.6366 0.0001 12 16 6.1560 -4.3470 -0.0005 13 8 5.8599 -4.9801 -1.2376 14 8 5.8599 -4.9810 1.2363 15 7 7.8058 -4.2020 -0.0011 16 6 8.6421 -4.1341 -1.2023 17 6 10.0831 -4.0015 -0.6828 18 1 10.5267 -3.0634 -1.0164 19 6 10.9259 -5.1889 -1.1527 20 8 12.2688 -5.0327 -0.6897 21 6 9.9463 -4.0146 0.8231 22 6 10.8992 -3.9315 1.8203 23 6 10.5186 -3.9653 3.1487 24 6 9.1806 -4.0821 3.4784 25 6 8.2264 -4.1653 2.4872 26 6 8.6028 -4.1327 1.1426 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.6798 0.8896 29 1 3.8746 -0.6808 -0.8904 30 1 3.6578 -3.1506 -0.8898 31 1 3.6584 -3.1503 0.8902 32 1 5.9148 -2.1228 0.8901 33 1 5.9148 -2.1228 -0.8898 34 1 8.5325 -5.0447 -1.7914 35 1 8.3759 -3.2621 -1.7997 36 1 10.5083 -6.1123 -0.7512 37 1 10.9196 -5.2306 -2.2419 38 1 12.8610 -5.7508 -0.9516 39 1 11.9436 -3.8399 1.5612 40 1 11.2644 -3.9007 3.9273 41 1 8.8823 -4.1082 4.5160 42 1 7.1831 -4.2559 2.7515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292530055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:08 Heat of formation + Delta-G solvation = -120.914529 kcal Electronic energy + Delta-G solvation = -25523.159612 eV Core-core repulsion = 21787.004317 eV Total energy + Delta-G solvation = -3736.155294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65403 -38.55364 -37.86470 -37.31714 -37.16455 -36.58338 -34.30052 -33.53248 -30.57597 -30.46845 -30.23370 -26.44584 -25.45768 -24.06901 -23.24562 -22.20157 -21.67494 -20.35532 -19.06177 -18.85632 -18.29841 -17.64246 -17.56221 -17.02266 -16.70337 -16.45646 -16.20053 -15.89710 -15.54159 -15.35149 -14.89405 -14.72466 -14.26824 -14.13552 -13.80945 -13.76937 -13.66803 -13.44202 -13.37929 -13.32293 -13.23143 -12.79011 -12.74786 -12.66570 -12.57526 -12.28064 -11.88922 -11.72279 -11.68804 -11.59985 -11.44863 -11.20097 -10.80853 -10.79834 -9.72919 -8.91842 -8.32167 -6.38398 -1.09264 0.43858 0.46987 1.32177 1.35170 1.37783 1.49214 2.34234 2.54043 2.78052 2.85370 3.02942 3.10293 3.30477 3.57789 3.68733 3.76910 3.94480 4.09287 4.22301 4.24430 4.32314 4.41879 4.45973 4.49771 4.54116 4.59571 4.65198 4.73084 4.74800 4.86853 4.91945 5.08873 5.22018 5.27498 5.33922 5.40430 5.50543 5.59174 5.65359 5.68417 6.11972 6.22177 6.69675 6.94281 7.26409 8.84759 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.003128 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.822366 B = 8950.256694 C = 9215.832357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.545 4.545 8 H 0.031 0.969 9 C -0.004 4.004 10 C -0.102 4.102 11 C -0.602 4.602 12 S 2.617 3.383 13 O -0.970 6.970 14 O -0.971 6.971 15 N -0.940 5.940 16 C 0.106 3.894 17 C -0.049 4.049 18 H 0.116 0.884 19 C 0.090 3.910 20 O -0.582 6.582 21 C -0.132 4.132 22 C -0.065 4.065 23 C -0.147 4.147 24 C -0.092 4.092 25 C -0.180 4.180 26 C 0.139 3.861 27 H 0.268 0.732 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.398 0.602 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.557 -7.820 -0.038 31.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.583 4.583 8 H 0.050 0.950 9 C -0.043 4.043 10 C -0.142 4.142 11 C -0.734 4.734 12 S 2.717 3.283 13 O -0.961 6.961 14 O -0.962 6.962 15 N -0.764 5.764 16 C -0.017 4.017 17 C -0.068 4.068 18 H 0.134 0.866 19 C 0.012 3.988 20 O -0.390 6.390 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.166 4.166 24 C -0.110 4.110 25 C -0.201 4.201 26 C 0.043 3.957 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.169 0.831 33 H 0.178 0.822 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.248 0.752 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 29.546 -8.061 0.086 30.626 hybrid contribution -0.547 0.570 -0.195 0.814 sum 28.998 -7.492 -0.109 29.951 Atomic orbital electron populations 1.70076 1.08484 1.28362 1.52217 1.26088 0.95687 1.03823 0.93846 0.85613 0.79627 0.77706 0.79458 1.18777 1.21050 1.16408 1.21530 0.92200 0.93373 1.51165 0.95025 1.19497 0.93830 0.93173 0.97782 1.21205 0.89657 1.00814 1.02505 1.30485 1.05963 1.22864 1.14099 1.04875 0.71718 0.78377 0.73344 1.93553 1.82654 1.73972 1.45873 1.93537 1.82733 1.74126 1.45771 1.56159 1.23876 1.84692 1.11679 1.22227 0.88623 1.05290 0.85588 1.20727 0.93923 1.01487 0.90675 0.86582 1.22130 0.82486 0.95629 0.98555 1.86396 1.20404 1.52159 1.80061 1.20227 0.91537 1.05908 0.95953 1.20719 0.99481 0.96846 0.91346 1.21391 0.96159 1.02394 0.96630 1.21165 0.92854 0.97527 0.99446 1.21146 1.01862 1.06792 0.90351 1.18274 0.91252 0.99364 0.86852 0.92362 0.95089 0.94906 0.91370 0.91676 0.83146 0.82201 0.88574 0.86871 0.94178 0.90562 0.75209 0.83965 0.83049 0.83606 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.95 43.20 27.47 68.60 1.88 45.08 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.24 -9.88 6.54 99.48 0.65 -9.22 16 7 C -0.54 -31.51 9.66 25.60 0.25 -31.26 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 10 C -0.10 -3.91 5.16 30.59 0.16 -3.75 16 11 C -0.60 -16.45 6.18 71.98 0.44 -16.00 16 12 S 2.62 75.72 5.56 -56.49 -0.31 75.40 16 13 O -0.97 -32.31 17.55 -127.65 -2.24 -34.55 16 14 O -0.97 -33.80 15.26 -127.65 -1.95 -35.75 16 15 N -0.94 -22.00 3.40 -337.80 -1.15 -23.15 16 16 C 0.11 1.76 6.72 86.63 0.58 2.34 16 17 C -0.05 -0.73 3.34 -11.13 -0.04 -0.77 16 18 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 19 C 0.09 1.05 6.24 71.98 0.45 1.50 16 20 O -0.58 -6.46 12.60 -148.98 -1.88 -8.33 16 21 C -0.13 -2.65 5.51 -19.63 -0.11 -2.76 16 22 C -0.07 -1.17 9.59 22.25 0.21 -0.95 16 23 C -0.15 -2.46 10.06 22.28 0.22 -2.24 16 24 C -0.09 -1.83 10.02 22.19 0.22 -1.60 16 25 C -0.18 -4.57 9.37 22.52 0.21 -4.36 16 26 C 0.14 3.39 6.59 38.34 0.25 3.64 16 27 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.03 1.34 7.20 -2.38 -0.02 1.32 16 29 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 30 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 31 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 33 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.10 1.47 7.70 -2.38 -0.02 1.45 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.40 1.07 9.12 -74.06 -0.68 0.40 16 39 H 0.14 2.11 7.54 -2.91 -0.02 2.09 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.13 3.58 6.11 -2.91 -0.02 3.57 16 Total: -1.00 -80.16 357.29 -1.60 -81.76 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.30 Total: 14.86 kcal Atomic # 6 Polarization: -59.12 SS G_CDS: 3.44 Total: -55.67 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -0.85 Total: -82.80 kcal Atomic # 8 Polarization: -72.57 SS G_CDS: -6.06 Total: -78.63 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 16 Polarization: 75.72 SS G_CDS: -0.31 Total: 75.40 kcal Total: -80.16 -1.60 -81.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292530055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.153 kcal (2) G-P(sol) polarization free energy of solvation -80.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds