Wall clock time and date at job start Tue Mar 31 2020 14:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47038 * 240.00189 * 3 2 1 5 5 H 1.48499 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46805 * 120.00211 * 3 2 1 7 7 C 1.39965 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99654 * 175.68108 * 7 2 1 9 9 C 1.41044 * 119.99987 * 355.67243 * 7 2 1 10 10 C 1.40748 * 120.30384 * 34.97453 * 9 7 2 11 11 C 1.36458 * 119.94109 * 180.29554 * 10 9 7 12 12 C 1.38878 * 120.58878 * 359.68170 * 11 10 9 13 13 C 1.38196 * 120.61641 * 359.97438 * 12 11 10 14 14 C 1.38683 * 120.03573 * 0.04829 * 13 12 11 15 15 N 1.39010 * 120.28825 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00100 * 34.55205 * 15 14 13 17 17 O 1.21599 * 119.99918 * 355.80938 * 16 15 14 18 18 C 1.47499 * 120.00062 * 175.80182 * 16 15 14 19 19 C 1.39785 * 120.14473 * 0.02562 * 18 16 15 20 20 C 1.37745 * 119.95306 * 180.02562 * 19 18 16 21 21 C 1.38490 * 120.32851 * 0.08775 * 20 19 18 22 22 C 1.38595 * 120.41588 * 0.20337 * 21 20 19 23 23 C 1.38987 * 119.91299 * 359.39921 * 22 21 20 24 24 O 1.35807 * 120.87230 * 180.66769 * 23 22 21 25 25 C 1.43463 * 116.61959 * 342.24409 * 24 23 22 26 26 C 1.53473 * 108.00021 * 46.70156 * 25 24 23 27 27 O 1.36145 * 119.36413 * 179.48050 * 22 21 20 28 28 H 0.97009 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.02491 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.70133 * 179.70340 * 11 10 9 31 31 H 1.08000 * 119.69006 * 180.02562 * 12 11 10 32 32 H 1.08007 * 119.98372 * 180.02562 * 13 12 11 33 33 H 0.96993 * 120.00202 * 214.55475 * 15 14 13 34 34 H 1.08000 * 120.02588 * 0.05086 * 19 18 16 35 35 H 1.08003 * 119.83292 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.79274 * 179.97438 * 21 20 19 37 37 H 1.08996 * 110.10548 * 286.92856 * 25 24 23 38 38 H 1.08998 * 109.58766 * 166.16786 * 25 24 23 39 39 H 1.09005 * 109.71244 * 180.31808 * 26 25 24 40 40 H 1.09004 * 109.75079 * 59.70463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0083 -1.2122 -0.0005 8 1 3.0860 -1.2134 -0.0710 9 6 1.3060 -2.4319 0.0911 10 6 0.0458 -2.5735 -0.5196 11 6 -0.6298 -3.7549 -0.4211 12 6 -0.0825 -4.8264 0.2725 13 6 1.1563 -4.7158 0.8751 14 6 1.8651 -3.5267 0.7916 15 7 3.1113 -3.4095 1.3962 16 6 3.9396 -4.4716 1.4443 17 8 3.5680 -5.5518 1.0275 18 6 5.2970 -4.3237 2.0023 19 6 5.7272 -3.0835 2.4826 20 6 6.9958 -2.9497 3.0023 21 6 7.8502 -4.0385 3.0505 22 6 7.4407 -5.2735 2.5728 23 6 6.1607 -5.4259 2.0531 24 8 5.7346 -6.6301 1.5921 25 6 6.7485 -7.6027 1.3018 26 6 7.7295 -7.6319 2.4818 27 8 8.3019 -6.3268 2.6208 28 1 -0.4850 0.8401 0.0004 29 1 -0.3882 -1.7461 -1.0611 30 1 -1.5987 -3.8578 -0.8871 31 1 -0.6297 -5.7550 0.3409 32 1 1.5724 -5.5557 1.4116 33 1 3.3848 -2.5634 1.7835 34 1 5.0653 -2.2308 2.4465 35 1 7.3260 -1.9906 3.3733 36 1 8.8432 -3.9238 3.4595 37 1 7.2789 -7.3300 0.3895 38 1 6.2897 -8.5840 1.1809 39 1 8.5171 -8.3599 2.2872 40 1 7.1988 -7.8998 3.3954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339168792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:53 Heat of formation + Delta-G solvation = -50.854093 kcal Electronic energy + Delta-G solvation = -26910.092289 eV Core-core repulsion = 23041.531092 eV Total energy + Delta-G solvation = -3868.561197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36501 -39.51003 -37.69360 -37.36005 -36.69937 -33.75536 -33.59747 -31.30735 -31.03975 -29.55338 -28.52969 -28.21605 -25.34577 -24.76131 -23.94952 -21.54736 -21.10361 -20.75907 -19.50792 -18.74335 -17.58160 -17.46154 -17.14696 -16.32418 -15.86638 -15.54567 -15.14318 -15.10298 -14.73783 -14.39259 -14.24687 -14.14636 -13.92692 -13.68613 -13.22142 -12.85480 -12.56954 -12.35284 -12.16686 -11.97404 -11.69161 -11.26178 -11.22832 -11.18833 -11.15586 -10.91110 -10.70192 -10.45795 -10.05501 -9.75825 -9.27321 -9.14860 -8.76970 -8.70107 -8.14984 -7.27713 -6.91686 -6.59829 -4.42597 0.84965 1.24799 2.69810 2.87681 2.95301 3.04998 3.06412 3.15038 3.21460 3.34654 3.79432 3.91888 4.06759 4.13788 4.58355 4.64847 4.68176 4.74106 4.92802 5.01837 5.09861 5.26134 5.32654 5.43259 5.61695 5.68241 5.96704 6.02066 6.31057 6.35924 6.49055 6.55723 6.60990 6.80212 6.99603 7.10077 7.23128 7.32141 7.33631 7.70088 7.75767 8.03631 8.12309 8.16061 8.45950 8.60009 8.86072 8.88317 9.08570 10.24634 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.003961 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.361001 B = 7066.907876 C = 8779.834795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.471 4.471 8 H 0.074 0.926 9 C 0.097 3.903 10 C -0.140 4.140 11 C -0.120 4.120 12 C -0.215 4.215 13 C -0.093 4.093 14 C 0.025 3.975 15 N -0.633 5.633 16 C 0.541 3.459 17 O -0.517 6.517 18 C -0.122 4.122 19 C -0.083 4.083 20 C -0.125 4.125 21 C -0.095 4.095 22 C 0.034 3.966 23 C 0.106 3.894 24 O -0.267 6.267 25 C 0.014 3.986 26 C 0.020 3.980 27 O -0.308 6.308 28 H 0.279 0.721 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.401 0.599 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.311 -6.421 5.942 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.502 4.502 8 H 0.092 0.908 9 C 0.093 3.907 10 C -0.160 4.160 11 C -0.139 4.139 12 C -0.235 4.235 13 C -0.113 4.113 14 C -0.069 4.069 15 N -0.276 5.276 16 C 0.328 3.672 17 O -0.394 6.394 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.011 4.011 23 C 0.058 3.942 24 O -0.179 6.179 25 C -0.062 4.062 26 C -0.056 4.056 27 O -0.223 6.223 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.238 0.762 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.870 -7.089 5.626 16.562 hybrid contribution 0.542 1.011 0.166 1.159 sum 14.412 -6.078 5.792 16.679 Atomic orbital electron populations 1.69759 1.07269 1.28864 1.37577 1.25844 0.94887 1.00974 0.92466 0.86305 0.79872 0.80355 0.79767 1.19070 1.20399 1.19042 1.19262 0.94514 0.90031 1.46376 0.90778 1.17455 0.93178 0.91286 0.88775 1.21174 0.96498 0.96436 1.01844 1.20544 0.98505 0.94366 1.00477 1.20369 0.97289 0.98259 1.07607 1.20682 0.93838 0.96511 1.00284 1.17822 0.87042 0.97780 1.04218 1.42757 1.15494 1.13286 1.56022 1.17922 0.83996 0.85004 0.80291 1.90764 1.75649 1.25889 1.47074 1.19558 0.95647 0.91804 1.05613 1.21276 0.96564 0.95792 0.96544 1.20821 0.93403 0.98583 1.01510 1.20538 1.00947 0.90013 0.99882 1.18767 0.89832 0.89560 1.02954 1.18897 0.92331 0.86575 0.96418 1.86717 1.32003 1.19875 1.79336 1.23746 0.90760 0.94068 0.97590 1.23657 0.99016 0.83647 0.99283 1.86305 1.33259 1.13364 1.89347 0.91013 0.85174 0.89334 0.89180 0.87159 0.76213 0.84266 0.84463 0.84650 0.90383 0.85967 0.86150 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.28 10.62 55.55 0.59 -19.69 16 2 C 0.07 1.79 5.42 -17.32 -0.09 1.69 16 3 Si 0.91 17.99 29.56 -169.99 -5.03 12.96 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.47 -11.83 8.22 -37.87 -0.31 -12.15 16 8 H 0.07 1.77 7.63 -52.49 -0.40 1.37 16 9 C 0.10 2.52 5.56 -106.65 -0.59 1.93 16 10 C -0.14 -3.62 8.61 -39.28 -0.34 -3.96 16 11 C -0.12 -2.88 9.96 -39.99 -0.40 -3.28 16 12 C -0.22 -5.10 10.04 -39.36 -0.40 -5.50 16 13 C -0.09 -2.30 8.68 -39.43 -0.34 -2.64 16 14 C 0.03 0.62 6.34 -83.20 -0.53 0.09 16 15 N -0.63 -13.49 4.90 -10.43 -0.05 -13.55 16 16 C 0.54 11.31 7.60 -12.49 -0.09 11.21 16 17 O -0.52 -12.33 12.51 -16.87 -0.21 -12.54 16 18 C -0.12 -2.09 5.89 -104.84 -0.62 -2.71 16 19 C -0.08 -1.14 9.53 -39.18 -0.37 -1.51 16 20 C -0.12 -1.40 10.02 -39.67 -0.40 -1.80 16 21 C -0.09 -1.10 9.95 -39.36 -0.39 -1.49 16 22 C 0.03 0.46 6.49 -39.17 -0.25 0.21 16 23 C 0.11 1.71 6.51 -38.60 -0.25 1.46 16 24 O -0.27 -4.43 8.43 -47.37 -0.40 -4.83 16 25 C 0.01 0.15 7.28 37.40 0.27 0.43 16 26 C 0.02 0.18 7.25 37.40 0.27 0.45 16 27 O -0.31 -3.74 10.42 -33.03 -0.34 -4.08 16 28 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 29 H 0.13 3.47 6.15 -52.49 -0.32 3.14 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.11 2.72 6.19 -52.48 -0.32 2.39 16 33 H 0.40 7.60 6.13 -40.82 -0.25 7.35 16 34 H 0.14 1.73 6.41 -52.49 -0.34 1.39 16 35 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -31.73 336.72 -9.35 -41.08 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -4.15 Total: 13.13 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -4.84 Total: -17.56 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.54 Total: -33.24 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.95 Total: -21.45 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.73 -9.35 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339168792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.774 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds