Wall clock time and date at job start Tue Mar 31 2020 14:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86803 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47038 * 240.00189 * 3 2 1 5 5 H 1.48499 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46805 * 120.00211 * 3 2 1 7 7 C 1.39965 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99654 * 175.68108 * 7 2 1 9 9 C 1.41044 * 119.99987 * 355.67243 * 7 2 1 10 10 C 1.40748 * 120.30384 * 34.97453 * 9 7 2 11 11 C 1.36458 * 119.94109 * 180.29554 * 10 9 7 12 12 C 1.38878 * 120.58878 * 359.68170 * 11 10 9 13 13 C 1.38196 * 120.61641 * 359.97438 * 12 11 10 14 14 C 1.38683 * 120.03573 * 0.04829 * 13 12 11 15 15 N 1.39010 * 120.28825 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00100 * 34.55205 * 15 14 13 17 17 O 1.21599 * 119.99918 * 355.80938 * 16 15 14 18 18 C 1.47499 * 120.00062 * 175.80182 * 16 15 14 19 19 C 1.39785 * 120.14473 * 0.02562 * 18 16 15 20 20 C 1.37745 * 119.95306 * 180.02562 * 19 18 16 21 21 C 1.38490 * 120.32851 * 0.08775 * 20 19 18 22 22 C 1.38595 * 120.41588 * 0.20337 * 21 20 19 23 23 C 1.38987 * 119.91299 * 359.39921 * 22 21 20 24 24 O 1.35807 * 120.87230 * 180.66769 * 23 22 21 25 25 C 1.43463 * 116.61959 * 342.24409 * 24 23 22 26 26 C 1.53473 * 108.00021 * 46.70156 * 25 24 23 27 27 O 1.36145 * 119.36413 * 179.48050 * 22 21 20 28 28 H 0.97009 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.02491 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.70133 * 179.70340 * 11 10 9 31 31 H 1.08000 * 119.69006 * 180.02562 * 12 11 10 32 32 H 1.08007 * 119.98372 * 180.02562 * 13 12 11 33 33 H 0.96993 * 120.00202 * 214.55475 * 15 14 13 34 34 H 1.08000 * 120.02588 * 0.05086 * 19 18 16 35 35 H 1.08003 * 119.83292 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.79274 * 179.97438 * 21 20 19 37 37 H 1.08996 * 110.10548 * 286.92856 * 25 24 23 38 38 H 1.08998 * 109.58766 * 166.16786 * 25 24 23 39 39 H 1.09005 * 109.71244 * 180.31808 * 26 25 24 40 40 H 1.09004 * 109.75079 * 59.70463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0083 -1.2122 -0.0005 8 1 3.0860 -1.2134 -0.0710 9 6 1.3060 -2.4319 0.0911 10 6 0.0458 -2.5735 -0.5196 11 6 -0.6298 -3.7549 -0.4211 12 6 -0.0825 -4.8264 0.2725 13 6 1.1563 -4.7158 0.8751 14 6 1.8651 -3.5267 0.7916 15 7 3.1113 -3.4095 1.3962 16 6 3.9396 -4.4716 1.4443 17 8 3.5680 -5.5518 1.0275 18 6 5.2970 -4.3237 2.0023 19 6 5.7272 -3.0835 2.4826 20 6 6.9958 -2.9497 3.0023 21 6 7.8502 -4.0385 3.0505 22 6 7.4407 -5.2735 2.5728 23 6 6.1607 -5.4259 2.0531 24 8 5.7346 -6.6301 1.5921 25 6 6.7485 -7.6027 1.3018 26 6 7.7295 -7.6319 2.4818 27 8 8.3019 -6.3268 2.6208 28 1 -0.4850 0.8401 0.0004 29 1 -0.3882 -1.7461 -1.0611 30 1 -1.5987 -3.8578 -0.8871 31 1 -0.6297 -5.7550 0.3409 32 1 1.5724 -5.5557 1.4116 33 1 3.3848 -2.5634 1.7835 34 1 5.0653 -2.2308 2.4465 35 1 7.3260 -1.9906 3.3733 36 1 8.8432 -3.9238 3.4595 37 1 7.2789 -7.3300 0.3895 38 1 6.2897 -8.5840 1.1809 39 1 8.5171 -8.3599 2.2872 40 1 7.1988 -7.8998 3.3954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339168792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:52 Heat of formation + Delta-G solvation = -68.802158 kcal Electronic energy + Delta-G solvation = -26910.870575 eV Core-core repulsion = 23041.531092 eV Total energy + Delta-G solvation = -3869.339483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39249 -41.09202 -39.14791 -38.47143 -38.02694 -35.49076 -35.46422 -32.32474 -32.12524 -31.45995 -30.00718 -29.44713 -27.15887 -25.77938 -25.21935 -23.27909 -22.53635 -21.99921 -21.07719 -19.92970 -19.21708 -18.66217 -18.46957 -17.62963 -17.41820 -16.87382 -16.55546 -16.14056 -16.02168 -15.75742 -15.64735 -15.38547 -15.17832 -14.88777 -14.74660 -14.41478 -14.15918 -13.92333 -13.60460 -13.18927 -12.95838 -12.91103 -12.80839 -12.70180 -12.20653 -12.11939 -12.04857 -11.95991 -11.63763 -11.58905 -11.05083 -10.92560 -10.51238 -9.77741 -9.23443 -9.16511 -8.78061 -8.43344 -6.35332 -0.28914 0.24525 0.90607 1.09410 1.44574 1.55155 1.56891 1.88659 2.07059 2.24747 2.26160 2.34382 2.76436 2.83503 3.23995 3.59110 3.69359 3.83363 3.90440 3.92168 4.13731 4.22920 4.34127 4.47824 4.53401 4.56264 4.62606 4.65405 4.76310 4.99781 5.03897 5.12810 5.21736 5.32980 5.36136 5.44954 5.58243 5.79641 5.85753 5.88697 6.15442 6.18723 6.27624 6.34336 6.66392 6.75281 6.97012 7.02000 7.39304 8.43992 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.003961 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.361001 B = 7066.907876 C = 8779.834795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.070 3.930 10 C -0.163 4.163 11 C -0.123 4.123 12 C -0.219 4.219 13 C -0.108 4.108 14 C 0.017 3.983 15 N -0.631 5.631 16 C 0.539 3.461 17 O -0.556 6.556 18 C -0.157 4.157 19 C -0.084 4.084 20 C -0.111 4.111 21 C -0.081 4.081 22 C 0.027 3.973 23 C 0.087 3.913 24 O -0.307 6.307 25 C 0.004 3.996 26 C 0.021 3.979 27 O -0.311 6.311 28 H 0.285 0.715 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.411 0.589 34 H 0.148 0.852 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.117 -5.391 7.148 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.066 3.934 10 C -0.183 4.183 11 C -0.142 4.142 12 C -0.238 4.238 13 C -0.129 4.129 14 C -0.077 4.077 15 N -0.275 5.275 16 C 0.329 3.671 17 O -0.436 6.436 18 C -0.161 4.161 19 C -0.103 4.103 20 C -0.129 4.129 21 C -0.100 4.100 22 C -0.018 4.018 23 C 0.039 3.961 24 O -0.220 6.220 25 C -0.071 4.071 26 C -0.053 4.053 27 O -0.226 6.226 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.249 0.751 34 H 0.165 0.835 35 H 0.196 0.804 36 H 0.187 0.813 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.694 -6.072 6.847 19.038 hybrid contribution -0.274 0.576 -0.195 0.667 sum 16.420 -5.496 6.652 18.549 Atomic orbital electron populations 1.69845 1.08836 1.30134 1.37637 1.26747 0.95639 1.04261 0.91318 0.85190 0.78537 0.75417 0.80235 1.18890 1.19936 1.17357 1.19482 0.94851 0.90488 1.47354 0.90270 1.17796 0.93799 0.92303 0.89501 1.21211 0.97293 0.96951 1.02888 1.20782 0.99393 0.93714 1.00270 1.20666 0.97075 0.99203 1.06904 1.20827 0.94531 0.96530 1.00982 1.17996 0.88268 0.97475 1.03968 1.42727 1.14678 1.14095 1.56004 1.18572 0.85273 0.84026 0.79271 1.90715 1.76794 1.27215 1.48838 1.19394 0.93888 0.94051 1.08717 1.21470 0.98003 0.94597 0.96240 1.21258 0.91807 1.00204 0.99624 1.21047 1.02210 0.88930 0.97796 1.18986 0.88987 0.90960 1.02854 1.19126 0.93380 0.86351 0.97228 1.86642 1.34837 1.20870 1.79659 1.24088 0.90655 0.93810 0.98550 1.23913 0.99863 0.83120 0.98439 1.86295 1.33143 1.14034 1.89175 0.90443 0.86426 0.86810 0.86683 0.87686 0.75109 0.83480 0.80386 0.81251 0.90276 0.83955 0.82119 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.65 10.62 21.83 0.23 -42.41 16 2 C 0.03 1.61 5.42 85.26 0.46 2.08 16 3 Si 0.99 36.18 29.56 68.60 2.03 38.21 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 7 C -0.49 -25.16 8.22 23.38 0.19 -24.97 16 8 H 0.08 3.83 7.63 -2.91 -0.02 3.81 16 9 C 0.07 3.76 5.56 -21.18 -0.12 3.65 16 10 C -0.16 -8.77 8.61 22.47 0.19 -8.57 16 11 C -0.12 -6.00 9.96 22.01 0.22 -5.78 16 12 C -0.22 -10.54 10.04 22.41 0.22 -10.32 16 13 C -0.11 -5.55 8.68 22.37 0.19 -5.36 16 14 C 0.02 0.90 6.34 38.91 0.25 1.15 16 15 N -0.63 -27.94 4.90 -305.16 -1.50 -29.43 16 16 C 0.54 23.54 7.60 86.68 0.66 24.19 16 17 O -0.56 -28.00 12.51 17.15 0.21 -27.78 16 18 C -0.16 -5.44 5.89 -20.01 -0.12 -5.56 16 19 C -0.08 -2.20 9.53 22.53 0.21 -1.99 16 20 C -0.11 -2.10 10.02 22.21 0.22 -1.87 16 21 C -0.08 -1.59 9.95 22.42 0.22 -1.37 16 22 C 0.03 0.70 6.49 22.53 0.15 0.84 16 23 C 0.09 2.83 6.51 22.91 0.15 2.98 16 24 O -0.31 -10.51 8.43 -64.39 -0.54 -11.05 16 25 C 0.00 0.08 7.28 72.14 0.52 0.60 16 26 C 0.02 0.35 7.25 72.14 0.52 0.87 16 27 O -0.31 -6.82 10.42 -82.93 -0.86 -7.68 16 28 H 0.28 13.26 8.30 -92.70 -0.77 12.50 16 29 H 0.12 6.52 6.15 -2.91 -0.02 6.50 16 30 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 31 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.11 5.43 6.19 -2.91 -0.02 5.41 16 33 H 0.41 15.98 6.13 -92.71 -0.57 15.41 16 34 H 0.15 3.47 6.41 -2.91 -0.02 3.46 16 35 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.16 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -72.50 336.72 4.27 -68.23 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: 0.54 Total: 41.35 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.16 Total: -29.43 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.26 Total: -71.85 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.19 Total: -46.52 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -72.50 4.27 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339168792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.568 kcal (2) G-P(sol) polarization free energy of solvation -72.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds