Wall clock time and date at job start Tue Mar 31 2020 14:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81395 * 103.00085 * 2 1 4 4 C 1.52997 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47366 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47417 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99764 * 269.99740 * 6 5 4 8 8 C 1.34770 * 120.00592 * 89.99560 * 6 5 4 9 9 O 1.21555 * 119.99864 * 354.64377 * 8 6 5 10 10 C 1.47865 * 120.00639 * 174.64279 * 8 6 5 11 11 C 1.39677 * 120.09635 * 329.41059 * 10 8 6 12 12 C 1.38032 * 120.03819 * 180.02562 * 11 10 8 13 13 C 1.38187 * 120.24198 * 359.67857 * 12 11 10 14 14 C 1.39175 * 120.19977 * 0.59682 * 13 12 11 15 15 S 1.76202 * 120.01789 * 179.69420 * 14 13 12 16 16 C 1.76202 * 100.00323 * 264.83552 * 15 14 13 17 17 H 1.08001 * 119.99758 * 5.02698 * 16 15 14 18 18 C 1.38725 * 119.99833 * 185.02338 * 16 15 14 19 19 N 1.31620 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46878 * 90.00288 * 20 18 16 22 22 H 1.48494 * 109.47244 * 210.00042 * 20 18 16 23 23 H 1.48498 * 109.47453 * 330.00706 * 20 18 16 24 24 C 1.38871 * 119.96204 * 359.43079 * 14 13 12 25 25 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46731 * 300.00149 * 1 2 3 27 27 H 1.09000 * 109.46847 * 59.99758 * 1 2 3 28 28 H 1.09008 * 109.47155 * 59.99624 * 3 2 1 29 29 H 1.08998 * 109.47205 * 299.99793 * 3 2 1 30 30 H 1.09003 * 109.47212 * 60.00359 * 4 3 2 31 31 H 1.09004 * 109.47421 * 299.99931 * 4 3 2 32 32 H 1.08999 * 109.47422 * 59.99729 * 5 4 3 33 33 H 1.09004 * 109.46710 * 300.00264 * 5 4 3 34 34 H 1.08997 * 109.47465 * 271.94493 * 7 6 5 35 35 H 1.09004 * 109.47261 * 31.94780 * 7 6 5 36 36 H 1.09005 * 109.47276 * 151.94334 * 7 6 5 37 37 H 1.08002 * 119.98142 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.88383 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.89464 * 180.30264 * 13 12 11 40 40 H 0.97005 * 119.99802 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.12304 * 180.25101 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0013 6 7 5.5422 3.5958 0.0013 7 6 6.2701 3.6778 1.2701 8 6 6.2119 3.6722 -1.1658 9 8 5.6230 3.5069 -2.2163 10 6 7.6628 3.9571 -1.1685 11 6 8.2243 4.7425 -0.1592 12 6 9.5788 5.0081 -0.1632 13 6 10.3859 4.4940 -1.1601 14 6 9.8361 3.7150 -2.1739 15 16 10.8684 3.0686 -3.4472 16 6 10.6496 4.3100 -4.6783 17 1 10.0716 5.1948 -4.4562 18 6 11.2199 4.1507 -5.9329 19 7 11.9240 3.0722 -6.2037 20 14 10.9874 5.4665 -7.2383 21 1 12.0853 6.4616 -7.1392 22 1 11.0088 4.8382 -8.5837 23 1 9.6835 6.1458 -7.0298 24 6 8.4743 3.4429 -2.1784 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8031 2.2371 0.8900 29 1 1.8033 2.2371 -0.8900 30 1 4.1617 1.4702 -0.8892 31 1 4.1610 1.4704 0.8909 32 1 3.6673 3.9000 0.8912 33 1 3.6680 3.9006 -0.8887 34 1 6.3048 4.7153 1.6026 35 1 5.7615 3.0726 2.0205 36 1 7.2855 3.3066 1.1311 37 1 7.5983 5.1422 0.6249 38 1 10.0104 5.6154 0.6187 39 1 11.4458 4.7014 -1.1551 40 1 12.3225 2.9607 -7.0811 41 1 8.0456 2.8353 -2.9615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342112883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:31 Heat of formation + Delta-G solvation = -9.821273 kcal Electronic energy + Delta-G solvation = -21901.955326 eV Core-core repulsion = 18613.370268 eV Total energy + Delta-G solvation = -3288.585058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29768 -37.96142 -36.18921 -33.84385 -32.49179 -30.85137 -30.57043 -29.34550 -27.63812 -26.37366 -25.55098 -23.25205 -22.34126 -21.81780 -19.68885 -17.99530 -17.08164 -16.84184 -16.36072 -15.86238 -15.64029 -15.46269 -14.86016 -14.82655 -14.35519 -14.19912 -13.90096 -13.74536 -13.59005 -13.28595 -13.24613 -12.93882 -12.74839 -12.55401 -12.20184 -12.11147 -11.79776 -11.38684 -11.17322 -11.10564 -11.06788 -11.06387 -10.67845 -10.32411 -9.93066 -9.77948 -9.14548 -8.97153 -8.84850 -8.56493 -8.01137 -8.00284 -6.70322 -6.27130 -4.01077 1.22348 1.31400 1.67102 2.25393 2.82128 2.97986 3.21039 3.24396 3.29893 3.48374 4.05224 4.25318 4.43442 4.57219 4.63253 4.74554 4.76851 4.84262 4.93023 4.98866 5.09127 5.10968 5.20422 5.24093 5.31797 5.31852 5.38419 5.48745 5.51155 5.68130 5.77258 5.87697 5.91490 6.00364 6.26603 6.37385 6.59265 6.65388 6.93208 7.18945 7.28823 7.59603 8.20123 8.34747 9.18963 10.79591 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.002572 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.023883 B =10882.028751 C =11900.243739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.080 4.080 4 C -0.121 4.121 5 C 0.125 3.875 6 N -0.618 5.618 7 C 0.073 3.927 8 C 0.564 3.436 9 O -0.528 6.528 10 C -0.153 4.153 11 C -0.100 4.100 12 C -0.142 4.142 13 C -0.057 4.057 14 C -0.106 4.106 15 S -0.036 6.036 16 C -0.518 4.518 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.871 5.871 20 Si 0.921 3.079 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.022 4.022 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.472 0.315 18.684 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.229 4.229 4 C -0.161 4.161 5 C 0.000 4.000 6 N -0.352 5.352 7 C -0.070 4.070 8 C 0.354 3.646 9 O -0.405 6.405 10 C -0.157 4.157 11 C -0.119 4.119 12 C -0.162 4.162 13 C -0.078 4.078 14 C -0.217 4.217 15 S 0.199 5.801 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.044 4.044 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.352 -1.736 17.898 24.305 hybrid contribution -1.797 2.911 -0.660 3.484 sum -18.150 1.175 17.238 25.059 Atomic orbital electron populations 1.23376 0.94356 1.06519 1.04837 1.87095 1.07122 1.11472 1.98062 1.23303 1.00234 0.94351 1.04997 1.21712 0.92467 0.97615 1.04298 1.21372 0.80106 0.95264 1.03264 1.47689 1.07143 1.73917 1.06413 1.22206 0.98406 1.01310 0.85059 1.18572 0.87117 0.75847 0.83037 1.90785 1.69481 1.49108 1.31090 1.19794 0.92326 1.04684 0.98931 1.21613 0.95558 0.97528 0.97199 1.21079 0.93603 1.01814 0.99727 1.21949 1.00238 0.93037 0.92572 1.22823 0.97109 1.00508 1.01219 1.83580 1.55147 1.34259 1.07138 1.22838 1.39297 1.05975 0.98481 0.90600 1.25000 0.94558 0.96439 0.97593 1.69987 1.31889 1.26068 1.22665 0.86122 0.78902 0.80575 0.79754 1.20173 1.20643 1.19521 1.21885 0.92472 0.95166 0.94837 0.88096 0.90599 0.90451 0.90035 0.89728 0.90020 0.90812 0.90411 0.89658 0.92268 0.91375 0.89604 0.85235 0.85889 0.85142 0.92071 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.76 101.05 1.09 0.33 16 2 S -0.26 -2.53 22.38 -107.50 -2.41 -4.94 16 3 C -0.08 -0.64 5.94 37.16 0.22 -0.42 16 4 C -0.12 -1.17 5.55 -26.73 -0.15 -1.32 16 5 C 0.12 1.18 5.38 -4.04 -0.02 1.16 16 6 N -0.62 -7.19 2.87 -182.68 -0.52 -7.71 16 7 C 0.07 0.59 8.77 59.85 0.52 1.12 16 8 C 0.56 9.20 7.42 -12.32 -0.09 9.11 16 9 O -0.53 -10.56 16.36 5.32 0.09 -10.47 16 10 C -0.15 -2.58 5.31 -104.99 -0.56 -3.14 16 11 C -0.10 -1.37 7.59 -39.12 -0.30 -1.67 16 12 C -0.14 -2.02 10.02 -39.68 -0.40 -2.42 16 13 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 14 C -0.11 -2.27 5.45 -39.00 -0.21 -2.48 16 15 S -0.04 -0.93 21.41 -107.50 -2.30 -3.23 16 16 C -0.52 -14.81 9.46 30.91 0.29 -14.52 16 17 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 19 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 20 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.02 -0.45 9.35 -38.92 -0.36 -0.81 16 25 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 33 H 0.09 0.94 7.50 -51.93 -0.39 0.55 16 34 H 0.06 0.38 6.82 -51.93 -0.35 0.03 16 35 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.09 0.79 5.76 -51.93 -0.30 0.49 16 37 H 0.13 1.31 4.94 -52.49 -0.26 1.05 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 2.98 7.93 -52.49 -0.42 2.56 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -33.68 371.70 -10.18 -43.87 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.91 Total: -0.43 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.44 Total: -14.49 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.21 Total: -32.64 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -4.71 Total: -8.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.68 -10.18 -43.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342112883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.047 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds