Wall clock time and date at job start Tue Mar 31 2020 14:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81395 * 103.00085 * 2 1 4 4 C 1.52997 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47366 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47417 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99764 * 269.99740 * 6 5 4 8 8 C 1.34770 * 120.00592 * 89.99560 * 6 5 4 9 9 O 1.21555 * 119.99864 * 354.64377 * 8 6 5 10 10 C 1.47865 * 120.00639 * 174.64279 * 8 6 5 11 11 C 1.39677 * 120.09635 * 329.41059 * 10 8 6 12 12 C 1.38032 * 120.03819 * 180.02562 * 11 10 8 13 13 C 1.38187 * 120.24198 * 359.67857 * 12 11 10 14 14 C 1.39175 * 120.19977 * 0.59682 * 13 12 11 15 15 S 1.76202 * 120.01789 * 179.69420 * 14 13 12 16 16 C 1.76202 * 100.00323 * 264.83552 * 15 14 13 17 17 H 1.08001 * 119.99758 * 5.02698 * 16 15 14 18 18 C 1.38725 * 119.99833 * 185.02338 * 16 15 14 19 19 N 1.31620 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46878 * 90.00288 * 20 18 16 22 22 H 1.48494 * 109.47244 * 210.00042 * 20 18 16 23 23 H 1.48498 * 109.47453 * 330.00706 * 20 18 16 24 24 C 1.38871 * 119.96204 * 359.43079 * 14 13 12 25 25 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46731 * 300.00149 * 1 2 3 27 27 H 1.09000 * 109.46847 * 59.99758 * 1 2 3 28 28 H 1.09008 * 109.47155 * 59.99624 * 3 2 1 29 29 H 1.08998 * 109.47205 * 299.99793 * 3 2 1 30 30 H 1.09003 * 109.47212 * 60.00359 * 4 3 2 31 31 H 1.09004 * 109.47421 * 299.99931 * 4 3 2 32 32 H 1.08999 * 109.47422 * 59.99729 * 5 4 3 33 33 H 1.09004 * 109.46710 * 300.00264 * 5 4 3 34 34 H 1.08997 * 109.47465 * 271.94493 * 7 6 5 35 35 H 1.09004 * 109.47261 * 31.94780 * 7 6 5 36 36 H 1.09005 * 109.47276 * 151.94334 * 7 6 5 37 37 H 1.08002 * 119.98142 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.88383 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.89464 * 180.30264 * 13 12 11 40 40 H 0.97005 * 119.99802 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.12304 * 180.25101 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0013 6 7 5.5422 3.5958 0.0013 7 6 6.2701 3.6778 1.2701 8 6 6.2119 3.6722 -1.1658 9 8 5.6230 3.5069 -2.2163 10 6 7.6628 3.9571 -1.1685 11 6 8.2243 4.7425 -0.1592 12 6 9.5788 5.0081 -0.1632 13 6 10.3859 4.4940 -1.1601 14 6 9.8361 3.7150 -2.1739 15 16 10.8684 3.0686 -3.4472 16 6 10.6496 4.3100 -4.6783 17 1 10.0716 5.1948 -4.4562 18 6 11.2199 4.1507 -5.9329 19 7 11.9240 3.0722 -6.2037 20 14 10.9874 5.4665 -7.2383 21 1 12.0853 6.4616 -7.1392 22 1 11.0088 4.8382 -8.5837 23 1 9.6835 6.1458 -7.0298 24 6 8.4743 3.4429 -2.1784 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8031 2.2371 0.8900 29 1 1.8033 2.2371 -0.8900 30 1 4.1617 1.4702 -0.8892 31 1 4.1610 1.4704 0.8909 32 1 3.6673 3.9000 0.8912 33 1 3.6680 3.9006 -0.8887 34 1 6.3048 4.7153 1.6026 35 1 5.7615 3.0726 2.0205 36 1 7.2855 3.3066 1.1311 37 1 7.5983 5.1422 0.6249 38 1 10.0104 5.6154 0.6187 39 1 11.4458 4.7014 -1.1551 40 1 12.3225 2.9607 -7.0811 41 1 8.0456 2.8353 -2.9615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342112883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:31 Heat of formation + Delta-G solvation = -29.925489 kcal Electronic energy + Delta-G solvation = -21902.827110 eV Core-core repulsion = 18613.370268 eV Total energy + Delta-G solvation = -3289.456842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48896 -39.26371 -37.25597 -34.72078 -34.66839 -32.12277 -31.92503 -29.85503 -28.39555 -27.75158 -27.33807 -24.36721 -23.70101 -22.75444 -20.88544 -19.83403 -18.48856 -17.84661 -17.43557 -16.95051 -16.86305 -16.70211 -16.40480 -16.12984 -15.60860 -15.19831 -14.88045 -14.74205 -14.55156 -14.40346 -14.29275 -14.05853 -13.84781 -13.52336 -13.25479 -13.21443 -12.98109 -12.97041 -12.72416 -12.56576 -12.52054 -12.31651 -11.85220 -11.73971 -11.26730 -11.10687 -10.98042 -10.68045 -10.01711 -9.70736 -9.66841 -8.81757 -8.75239 -8.40884 -6.20823 -0.12166 0.25218 0.68055 1.27595 1.35648 1.43765 1.57980 1.65801 1.77700 1.93457 2.22805 2.73726 2.91817 3.39005 3.45192 3.82498 3.85316 3.95395 3.98801 4.14971 4.27107 4.31245 4.31869 4.33922 4.39717 4.48987 4.51312 4.59030 4.67613 4.72775 4.86157 4.89747 4.93303 4.96872 5.11903 5.23537 5.32196 5.36846 5.50381 5.52529 5.88147 6.14100 6.22992 6.99434 7.02708 8.66083 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.002572 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.023883 B =10882.028751 C =11900.243739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.335 6.335 3 C -0.064 4.064 4 C -0.113 4.113 5 C 0.123 3.877 6 N -0.605 5.605 7 C 0.059 3.941 8 C 0.557 3.443 9 O -0.582 6.582 10 C -0.155 4.155 11 C -0.071 4.071 12 C -0.120 4.120 13 C -0.065 4.065 14 C -0.129 4.129 15 S -0.095 6.095 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.019 3.981 19 N -0.905 5.905 20 Si 0.991 3.009 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.050 4.050 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.135 0.865 40 H 0.274 0.726 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.292 3.115 22.453 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.110 6.110 3 C -0.212 4.212 4 C -0.153 4.153 5 C -0.001 4.001 6 N -0.336 5.336 7 C -0.082 4.082 8 C 0.347 3.653 9 O -0.463 6.463 10 C -0.160 4.160 11 C -0.089 4.089 12 C -0.140 4.140 13 C -0.086 4.086 14 C -0.240 4.240 15 S 0.140 5.860 16 C -0.683 4.683 17 H 0.083 0.917 18 C -0.186 4.186 19 N -0.542 5.542 20 Si 0.813 3.187 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.072 4.072 25 H 0.126 0.874 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.199 0.801 38 H 0.195 0.805 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.175 1.056 21.733 28.351 hybrid contribution -1.362 2.011 -1.602 2.910 sum -19.537 3.067 20.131 28.220 Atomic orbital electron populations 1.23403 0.90594 1.07404 1.05990 1.87354 1.11421 1.13999 1.98243 1.23232 0.98925 0.92697 1.06345 1.21595 0.93659 0.97545 1.02508 1.21585 0.78761 0.95098 1.04644 1.47772 1.08152 1.71485 1.06187 1.22566 0.97932 1.04073 0.83601 1.18601 0.86925 0.75960 0.83853 1.90759 1.70313 1.51819 1.33397 1.19925 0.92633 1.04711 0.98711 1.22183 0.95975 0.94465 0.96309 1.21590 0.93218 1.00182 0.98976 1.22066 1.01153 0.92721 0.92612 1.22470 0.96663 1.03685 1.01197 1.83426 1.57322 1.35760 1.09495 1.23049 1.39299 1.06230 0.99751 0.91704 1.26003 0.93980 0.98830 0.99777 1.70104 1.32725 1.27928 1.23418 0.85059 0.79022 0.77792 0.76824 1.18470 1.19583 1.19577 1.21549 0.92780 0.96833 0.96003 0.87395 0.88780 0.89882 0.86950 0.89935 0.94403 0.89995 0.85607 0.91514 0.88836 0.88366 0.90521 0.80093 0.80530 0.84732 0.91665 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.76 113.37 1.22 0.09 16 2 S -0.34 -6.31 22.38 -56.49 -1.26 -7.58 16 3 C -0.06 -0.92 5.94 71.98 0.43 -0.49 16 4 C -0.11 -2.08 5.55 30.59 0.17 -1.91 16 5 C 0.12 2.02 5.38 86.38 0.46 2.48 16 6 N -0.60 -12.47 2.87 -850.17 -2.44 -14.92 16 7 C 0.06 0.65 8.77 127.77 1.12 1.77 16 8 C 0.56 18.13 7.42 86.79 0.64 18.78 16 9 O -0.58 -24.65 16.36 -3.89 -0.06 -24.72 16 10 C -0.15 -5.18 5.31 -20.11 -0.11 -5.29 16 11 C -0.07 -1.66 7.59 22.57 0.17 -1.48 16 12 C -0.12 -2.89 10.02 22.21 0.22 -2.67 16 13 C -0.06 -2.26 9.79 22.48 0.22 -2.04 16 14 C -0.13 -5.80 5.45 22.65 0.12 -5.68 16 15 S -0.09 -5.28 21.41 -56.49 -1.21 -6.49 16 16 C -0.54 -32.28 9.46 67.94 0.64 -31.64 16 17 H 0.06 3.89 7.79 -2.91 -0.02 3.87 16 18 C 0.02 1.13 5.49 84.84 0.47 1.60 16 19 N -0.91 -55.52 13.22 21.63 0.29 -55.23 16 20 Si 0.99 45.76 29.55 68.60 2.03 47.78 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.05 -2.17 9.35 22.70 0.21 -1.96 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.13 0.94 8.07 -2.39 -0.02 0.92 16 33 H 0.07 1.40 7.50 -2.38 -0.02 1.38 16 34 H 0.09 0.49 6.82 -2.39 -0.02 0.47 16 35 H 0.10 0.60 8.09 -2.39 -0.02 0.58 16 36 H 0.08 1.04 5.76 -2.38 -0.01 1.03 16 37 H 0.18 2.38 4.94 -2.91 -0.01 2.36 16 38 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 40 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 41 H 0.10 4.77 7.93 -2.91 -0.02 4.75 16 Total: -1.00 -83.42 371.70 4.35 -79.07 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.02 Total: 10.51 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 6.00 Total: -28.43 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -2.16 Total: -70.15 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: -11.59 SS G_CDS: -2.47 Total: -14.07 kcal Total: -83.42 4.35 -79.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342112883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.146 kcal (2) G-P(sol) polarization free energy of solvation -83.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds