Wall clock time and date at job start Tue Mar 31 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 N 1.46497 * 109.46766 * 120.00518 * 2 1 3 5 5 C 1.34780 * 119.99692 * 274.99257 * 4 2 1 6 6 O 1.21591 * 120.00226 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00284 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00154 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46998 * 180.02562 * 8 7 5 10 10 O 1.21294 * 120.00403 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99990 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99798 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99971 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99519 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00326 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99544 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47418 * 60.00386 * 16 14 12 18 18 H 1.48500 * 109.46867 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47178 * 299.99606 * 16 14 12 20 20 C 1.50703 * 109.46885 * 239.99771 * 2 1 3 21 21 C 1.38235 * 120.01086 * 265.00130 * 20 2 1 22 22 C 1.38221 * 120.01454 * 179.74853 * 21 20 2 23 23 C 1.38258 * 120.02693 * 0.02562 * 22 21 20 24 24 C 1.38193 * 120.01234 * 359.97438 * 23 22 21 25 25 C 1.38335 * 120.00097 * 84.73110 * 20 2 1 26 26 Cl 1.73597 * 120.01783 * 0.24590 * 25 20 2 27 27 H 1.08999 * 109.47117 * 299.99865 * 1 2 3 28 28 H 1.09003 * 109.46971 * 59.99589 * 1 2 3 29 29 H 1.09000 * 109.47519 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00383 * 95.00348 * 4 2 1 31 31 H 0.97007 * 119.99850 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.47605 * 300.00173 * 8 7 5 33 33 H 1.08999 * 109.47087 * 60.00347 * 8 7 5 34 34 H 0.96996 * 119.99677 * 0.02562 * 11 9 8 35 35 H 0.97003 * 120.00253 * 179.97438 * 15 14 12 36 36 H 1.07995 * 119.98862 * 359.72708 * 21 20 2 37 37 H 1.08001 * 119.98312 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.99226 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.00879 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8576 1.1613 2.4119 7 7 2.5957 -0.6538 3.4577 8 6 2.7351 0.0769 4.7197 9 6 3.2516 -0.8552 5.7854 10 8 3.4803 -2.0158 5.5172 11 7 3.4585 -0.3994 7.0368 12 6 3.9279 -1.2475 8.0064 13 1 4.1323 -2.2807 7.7673 14 6 4.1417 -0.7774 9.2963 15 7 3.8935 0.4798 9.5871 16 14 4.7820 -1.9328 10.6172 17 1 6.1046 -2.4691 10.2071 18 1 4.9227 -1.1923 11.8967 19 1 3.8269 -3.0555 10.7982 20 6 2.0323 -0.7105 -1.2305 21 6 2.3611 -2.0517 -1.1686 22 6 2.8168 -2.7047 -2.2984 23 6 2.9447 -2.0168 -3.4909 24 6 2.6163 -0.6759 -3.5540 25 6 2.1591 -0.0218 -2.4235 26 17 1.7458 1.6624 -2.5022 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6318 1.1525 31 1 2.8263 -1.5951 3.4142 32 1 3.4364 0.9007 4.5871 33 1 1.7644 0.4709 5.0206 34 1 3.2746 0.5285 7.2515 35 1 4.0424 0.8079 10.4877 36 1 2.2621 -2.5894 -0.2372 37 1 3.0739 -3.7525 -2.2494 38 1 3.3012 -2.5275 -4.3732 39 1 2.7158 -0.1387 -4.4856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343888984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:27 Heat of formation + Delta-G solvation = -48.566569 kcal Electronic energy + Delta-G solvation = -24006.951872 eV Core-core repulsion = 20168.349771 eV Total energy + Delta-G solvation = -3838.602101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47049 -39.44223 -38.19802 -36.76610 -35.81096 -34.38472 -33.65099 -31.80714 -31.33707 -31.15348 -29.47542 -27.36765 -24.66372 -24.04520 -23.21042 -21.42743 -20.40200 -19.56799 -18.72087 -18.07583 -17.38062 -16.47503 -15.90593 -15.52216 -15.46276 -15.29389 -14.63834 -14.47002 -14.42247 -14.25954 -14.11952 -13.84806 -13.63275 -13.31882 -12.96802 -12.49914 -12.17322 -12.09055 -11.90421 -11.85082 -11.80372 -11.62438 -11.42739 -11.10192 -10.86647 -10.50585 -10.31299 -10.03730 -9.62115 -9.39771 -9.24087 -9.01426 -8.63143 -8.61944 -8.09449 -6.50683 -3.92837 0.73175 0.82495 1.79858 2.74481 3.13990 3.20380 3.21828 3.25690 3.39387 3.75889 4.08763 4.15615 4.35261 4.39039 4.55877 4.87426 4.90663 4.91737 5.09213 5.13575 5.18024 5.23868 5.42673 5.55850 5.67545 5.79739 5.88106 5.97335 5.99687 6.01653 6.07952 6.09115 6.35043 6.50142 6.75143 7.05622 7.46284 7.92795 8.21186 8.45876 8.78265 9.05112 9.40180 9.88094 10.66129 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.002161 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.289312 B =12952.232782 C =13643.531081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.199 3.801 3 H 0.106 0.894 4 N -0.746 5.746 5 C 0.707 3.293 6 O -0.594 6.594 7 N -0.724 5.724 8 C 0.129 3.871 9 C 0.429 3.571 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.078 4.078 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.106 4.106 25 C -0.029 4.029 26 Cl -0.061 7.061 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.394 0.606 31 H 0.406 0.594 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.275 0.725 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -2.472 -25.556 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.094 3.906 3 H 0.124 0.876 4 N -0.404 5.404 5 C 0.406 3.594 6 O -0.472 6.472 7 N -0.381 5.381 8 C 0.000 4.000 9 C 0.214 3.786 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.056 4.056 26 Cl -0.032 7.032 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.230 0.770 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.572 -1.873 -25.431 25.907 hybrid contribution 0.425 -0.700 0.798 1.144 sum -4.147 -2.574 -24.633 25.112 Atomic orbital electron populations 1.22167 0.93836 1.02439 1.03184 1.19616 0.94305 0.96796 0.79913 0.87626 1.45224 1.72684 1.13669 1.08776 1.15808 0.78428 0.84980 0.80157 1.90911 1.57405 1.14242 1.84670 1.44760 1.70187 1.14863 1.08271 1.20787 1.02145 0.94305 0.82746 1.19764 0.85851 0.88866 0.84088 1.90486 1.58381 1.18488 1.81184 1.41785 1.56177 1.13070 1.07342 1.19673 1.40484 0.94903 0.88426 0.87754 1.25325 0.97282 0.96599 0.98512 1.69606 1.47750 1.14108 1.22003 0.85873 0.79449 0.79521 0.79115 1.19788 1.20860 1.19791 1.19865 0.99641 0.94371 0.94057 1.20921 0.99104 0.93105 0.99134 1.21265 0.98378 1.00481 0.92525 1.21150 0.99682 0.93661 0.98442 1.21066 0.99121 0.94971 0.97355 1.20728 1.03713 0.86139 0.95020 1.98391 1.91946 1.14488 1.98397 0.90947 0.91459 0.92306 0.76951 0.75653 0.89986 0.89964 0.76998 0.91531 0.85073 0.85069 0.84989 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.47 37.16 0.35 -1.32 16 2 C 0.20 2.28 2.29 -69.08 -0.16 2.12 16 3 H 0.11 1.43 6.57 -51.93 -0.34 1.09 16 4 N -0.75 -9.13 5.00 -59.81 -0.30 -9.42 16 5 C 0.71 11.48 8.53 -86.92 -0.74 10.74 16 6 O -0.59 -11.56 16.01 5.29 0.08 -11.47 16 7 N -0.72 -12.13 5.53 -66.42 -0.37 -12.50 16 8 C 0.13 2.40 6.15 -5.20 -0.03 2.37 16 9 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 10 O -0.60 -15.21 15.24 5.54 0.08 -15.12 16 11 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 12 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 13 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 15 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 16 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C -0.08 -0.75 5.06 -104.59 -0.53 -1.28 16 21 C -0.10 -0.84 9.24 -39.59 -0.37 -1.20 16 22 C -0.11 -0.73 10.05 -39.58 -0.40 -1.12 16 23 C -0.11 -0.71 10.05 -39.59 -0.40 -1.11 16 24 C -0.11 -0.79 9.83 -39.55 -0.39 -1.18 16 25 C -0.03 -0.27 6.31 -39.49 -0.25 -0.52 16 26 Cl -0.06 -0.59 27.15 -51.86 -1.41 -2.00 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.39 3.86 6.22 -40.82 -0.25 3.60 16 31 H 0.41 6.56 7.45 -40.82 -0.30 6.25 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.13 0.87 6.07 -52.49 -0.32 0.56 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -31.97 352.45 -8.61 -40.58 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -4.42 Total: 16.62 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -3.24 Total: 9.37 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.00 Total: -58.79 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: 0.17 Total: -26.59 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.41 Total: -2.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.97 -8.61 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343888984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.987 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds