Wall clock time and date at job start Tue Mar 31 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 N 1.46497 * 109.46766 * 120.00518 * 2 1 3 5 5 C 1.34780 * 119.99692 * 274.99257 * 4 2 1 6 6 O 1.21591 * 120.00226 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00284 * 179.97438 * 5 4 2 8 8 C 1.46495 * 120.00154 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46998 * 180.02562 * 8 7 5 10 10 O 1.21294 * 120.00403 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99990 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99798 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99971 * 0.02562 * 12 11 9 14 14 C 1.38949 * 119.99519 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00326 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99544 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47418 * 60.00386 * 16 14 12 18 18 H 1.48500 * 109.46867 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47178 * 299.99606 * 16 14 12 20 20 C 1.50703 * 109.46885 * 239.99771 * 2 1 3 21 21 C 1.38235 * 120.01086 * 265.00130 * 20 2 1 22 22 C 1.38221 * 120.01454 * 179.74853 * 21 20 2 23 23 C 1.38258 * 120.02693 * 0.02562 * 22 21 20 24 24 C 1.38193 * 120.01234 * 359.97438 * 23 22 21 25 25 C 1.38335 * 120.00097 * 84.73110 * 20 2 1 26 26 Cl 1.73597 * 120.01783 * 0.24590 * 25 20 2 27 27 H 1.08999 * 109.47117 * 299.99865 * 1 2 3 28 28 H 1.09003 * 109.46971 * 59.99589 * 1 2 3 29 29 H 1.09000 * 109.47519 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00383 * 95.00348 * 4 2 1 31 31 H 0.97007 * 119.99850 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.47605 * 300.00173 * 8 7 5 33 33 H 1.08999 * 109.47087 * 60.00347 * 8 7 5 34 34 H 0.96996 * 119.99677 * 0.02562 * 11 9 8 35 35 H 0.97003 * 120.00253 * 179.97438 * 15 14 12 36 36 H 1.07995 * 119.98862 * 359.72708 * 21 20 2 37 37 H 1.08001 * 119.98312 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.99226 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.00879 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8576 1.1613 2.4119 7 7 2.5957 -0.6538 3.4577 8 6 2.7351 0.0769 4.7197 9 6 3.2516 -0.8552 5.7854 10 8 3.4803 -2.0158 5.5172 11 7 3.4585 -0.3994 7.0368 12 6 3.9279 -1.2475 8.0064 13 1 4.1323 -2.2807 7.7673 14 6 4.1417 -0.7774 9.2963 15 7 3.8935 0.4798 9.5871 16 14 4.7820 -1.9328 10.6172 17 1 6.1046 -2.4691 10.2071 18 1 4.9227 -1.1923 11.8967 19 1 3.8269 -3.0555 10.7982 20 6 2.0323 -0.7105 -1.2305 21 6 2.3611 -2.0517 -1.1686 22 6 2.8168 -2.7047 -2.2984 23 6 2.9447 -2.0168 -3.4909 24 6 2.6163 -0.6759 -3.5540 25 6 2.1591 -0.0218 -2.4235 26 17 1.7458 1.6624 -2.5022 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6318 1.1525 31 1 2.8263 -1.5951 3.4142 32 1 3.4364 0.9007 4.5871 33 1 1.7644 0.4709 5.0206 34 1 3.2746 0.5285 7.2515 35 1 4.0424 0.8079 10.4877 36 1 2.2621 -2.5894 -0.2372 37 1 3.0739 -3.7525 -2.2494 38 1 3.3012 -2.5275 -4.3732 39 1 2.7158 -0.1387 -4.4856 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343888984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:27 Heat of formation + Delta-G solvation = -70.551508 kcal Electronic energy + Delta-G solvation = -24007.905210 eV Core-core repulsion = 20168.349771 eV Total energy + Delta-G solvation = -3839.555439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51524 -40.51022 -39.87803 -37.44902 -36.82790 -36.18142 -35.27382 -33.38576 -32.69548 -31.73659 -30.28293 -28.93991 -26.42365 -24.93235 -23.88622 -22.34971 -21.51260 -21.30974 -20.14004 -19.80883 -18.29328 -17.52337 -17.25398 -16.88443 -16.70761 -16.30859 -16.25314 -15.76056 -15.73514 -15.35848 -15.07922 -15.03921 -14.78249 -14.27169 -13.97479 -13.92736 -13.53367 -13.50563 -13.21839 -12.89262 -12.75528 -12.55338 -12.46063 -12.45452 -12.13220 -12.12852 -11.59413 -11.55112 -11.44336 -10.54668 -10.50487 -10.10414 -9.98733 -9.86995 -9.64459 -8.49864 -6.00214 0.13177 0.25205 1.13909 1.38951 1.42685 1.51205 1.57443 1.90774 2.09572 2.29167 2.63509 3.02542 3.17341 3.29265 3.41976 3.77769 4.04256 4.20321 4.23101 4.23873 4.38998 4.41952 4.44908 4.47237 4.60465 4.72578 4.84550 4.89767 5.17018 5.19597 5.28959 5.30974 5.39351 5.44451 5.53579 5.81870 5.90398 5.94017 6.48970 6.98934 7.04219 7.43036 7.51215 7.95251 8.66819 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.002161 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.289312 B =12952.232782 C =13643.531081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 H 0.082 0.918 4 N -0.728 5.728 5 C 0.707 3.293 6 O -0.627 6.627 7 N -0.722 5.722 8 C 0.142 3.858 9 C 0.435 3.565 10 O -0.623 6.623 11 N -0.560 5.560 12 C -0.337 4.337 13 H 0.087 0.913 14 C -0.012 4.012 15 N -0.917 5.917 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.269 1.269 20 C -0.094 4.094 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.105 4.105 24 C -0.111 4.111 25 C -0.044 4.044 26 Cl -0.075 7.075 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.408 0.592 31 H 0.411 0.589 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -4.006 -26.755 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.095 3.905 3 H 0.100 0.900 4 N -0.386 5.386 5 C 0.407 3.593 6 O -0.508 6.508 7 N -0.380 5.380 8 C 0.013 3.987 9 C 0.222 3.778 10 O -0.511 6.511 11 N -0.195 5.195 12 C -0.466 4.466 13 H 0.105 0.895 14 C -0.212 4.212 15 N -0.557 5.557 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.095 4.095 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.071 4.071 26 Cl -0.046 7.046 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.247 0.753 31 H 0.248 0.752 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.210 -3.425 -26.671 27.218 hybrid contribution 0.311 -0.262 1.036 1.112 sum -3.900 -3.687 -25.636 26.191 Atomic orbital electron populations 1.22097 0.93324 1.03054 1.02513 1.19582 0.94722 0.95857 0.80305 0.90036 1.45106 1.71509 1.14216 1.07790 1.15888 0.78105 0.84605 0.80738 1.90891 1.58846 1.15819 1.85268 1.44655 1.70549 1.14901 1.07876 1.20587 1.02527 0.93391 0.82200 1.20390 0.84270 0.88981 0.84207 1.90463 1.59050 1.19901 1.81693 1.41838 1.56853 1.13021 1.07805 1.19704 1.42419 0.94730 0.89769 0.89483 1.26141 0.96921 0.98136 1.00016 1.69677 1.47974 1.15291 1.22719 0.84924 0.78799 0.77647 0.76599 1.19448 1.19723 1.19432 1.19727 1.01405 0.95142 0.93231 1.21119 0.99114 0.92487 1.00322 1.21609 0.97216 1.01685 0.91992 1.21543 0.98236 0.93136 0.99417 1.21338 0.98594 0.95682 0.97327 1.20900 1.04794 0.85672 0.95703 1.98383 1.92139 1.15636 1.98429 0.93104 0.90590 0.90975 0.75324 0.75168 0.89134 0.88997 0.76715 0.91083 0.84056 0.82554 0.82101 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.47 71.98 0.68 -2.50 16 2 C 0.20 4.55 2.29 44.25 0.10 4.65 16 3 H 0.08 2.27 6.57 -2.39 -0.02 2.26 16 4 N -0.73 -17.38 5.00 -461.41 -2.31 -19.69 16 5 C 0.71 22.79 8.53 179.05 1.53 24.32 16 6 O -0.63 -24.62 16.01 -4.00 -0.06 -24.68 16 7 N -0.72 -23.84 5.53 -482.31 -2.67 -26.51 16 8 C 0.14 5.24 6.15 85.63 0.53 5.76 16 9 C 0.43 19.99 7.85 87.66 0.69 20.67 16 10 O -0.62 -31.78 15.24 -3.07 -0.05 -31.82 16 11 N -0.56 -28.11 5.29 -306.97 -1.62 -29.74 16 12 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 13 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 16 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 C -0.09 -1.71 5.06 -19.84 -0.10 -1.81 16 21 C -0.11 -1.57 9.24 22.27 0.21 -1.36 16 22 C -0.11 -1.10 10.05 22.27 0.22 -0.88 16 23 C -0.11 -1.00 10.05 22.26 0.22 -0.78 16 24 C -0.11 -1.42 9.83 22.29 0.22 -1.20 16 25 C -0.04 -0.77 6.31 22.33 0.14 -0.63 16 26 Cl -0.07 -1.44 27.15 -2.72 -0.07 -1.52 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.44 7.88 -2.39 -0.02 1.42 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.41 7.45 6.22 -92.71 -0.58 6.88 16 31 H 0.41 12.97 7.45 -92.70 -0.69 12.27 16 32 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 35 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.14 1.57 6.07 -2.91 -0.02 1.55 16 37 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -68.73 352.45 0.38 -68.35 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.87 Total: 42.07 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 5.72 Total: 28.43 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -6.32 Total: -124.48 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.11 Total: -56.50 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.07 Total: -1.52 kcal Total: -68.73 0.38 -68.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343888984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.202 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds