Wall clock time and date at job start Tue Mar 31 2020 14:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47206 * 2 1 4 4 S 1.81397 * 109.47206 * 239.99974 * 2 1 3 5 5 C 1.81397 * 102.99868 * 64.99816 * 4 2 1 6 6 C 1.50706 * 109.47319 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 C 1.50701 * 109.47117 * 119.99933 * 2 1 3 15 15 O 1.21283 * 120.00011 * 99.99867 * 14 2 1 16 16 N 1.34773 * 120.00091 * 279.99874 * 14 2 1 17 17 C 1.47432 * 125.64952 * 359.69401 * 16 14 2 18 18 C 1.54681 * 104.94064 * 204.07227 * 17 16 14 19 19 C 1.55158 * 101.68223 * 323.27767 * 18 17 16 20 20 C 1.47025 * 125.64832 * 180.02562 * 16 14 2 21 21 H 1.08993 * 109.88327 * 59.48719 * 20 16 14 22 22 C 1.50705 * 109.88164 * 298.47503 * 20 16 14 23 23 C 1.33381 * 125.20513 * 140.00272 * 22 20 16 24 24 C 1.38418 * 114.92697 * 179.97438 * 23 22 20 25 25 C 1.33390 * 114.92026 * 359.97438 * 24 23 22 26 26 S 1.75887 * 125.20129 * 319.69562 * 22 20 16 27 27 H 1.08993 * 109.47295 * 59.99999 * 1 2 3 28 28 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47038 * 299.99745 * 1 2 3 30 30 H 1.09001 * 109.47514 * 60.00346 * 5 4 2 31 31 H 1.09006 * 109.47482 * 300.00049 * 5 4 2 32 32 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 33 33 H 1.08998 * 110.36260 * 323.00515 * 17 16 14 34 34 H 1.08999 * 110.36350 * 85.32563 * 17 16 14 35 35 H 1.09006 * 111.10252 * 205.11058 * 18 17 16 36 36 H 1.09000 * 110.85240 * 81.33917 * 18 17 16 37 37 H 1.09003 * 110.71802 * 276.97810 * 19 18 17 38 38 H 1.08996 * 110.87793 * 153.77405 * 19 18 17 39 39 H 1.08002 * 122.53663 * 359.95176 * 23 22 20 40 40 H 1.08003 * 122.54534 * 180.02562 * 24 23 22 41 41 H 1.07997 * 125.20765 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8308 6 6 1.9973 -0.3695 -4.1513 7 1 2.5567 -1.2931 -4.1760 8 6 1.6774 0.2744 -5.3277 9 7 0.9967 1.3992 -5.2976 10 14 2.2122 -0.4502 -6.9642 11 1 1.7469 0.4260 -8.0692 12 1 3.6934 -0.5500 -7.0011 13 1 1.6208 -1.8031 -7.1235 14 6 2.0324 -0.7104 1.2305 15 8 2.4064 -1.8617 1.1558 16 7 2.0659 -0.0664 2.4139 17 6 1.6494 1.3288 2.6450 18 6 2.4222 1.7715 3.9097 19 6 2.4124 0.4706 4.7553 20 6 2.5304 -0.6367 3.6869 21 1 3.5692 -0.9533 3.5942 22 6 1.6683 -1.8131 4.0664 23 6 2.1123 -2.9503 4.6037 24 6 1.1328 -3.8915 4.8693 25 6 -0.1070 -3.5185 4.5481 26 16 -0.0784 -1.8935 3.8755 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0001 1.2085 -2.7142 31 1 0.4791 0.2881 -2.8037 32 1 0.7193 1.7756 -4.4477 33 1 1.9239 1.9525 1.7943 34 1 0.5751 1.3795 2.8226 35 1 1.9007 2.5773 4.4264 36 1 3.4411 2.0664 3.6584 37 1 1.4770 0.3765 5.3070 38 1 3.2639 0.4428 5.4351 39 1 3.1571 -3.1237 4.8152 40 1 1.3552 -4.8547 5.3044 41 1 -0.9933 -4.1205 4.6840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:09 Heat of formation + Delta-G solvation = -6.696412 kcal Electronic energy + Delta-G solvation = -22925.504210 eV Core-core repulsion = 19637.054656 eV Total energy + Delta-G solvation = -3288.449554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36270 -38.01858 -37.17436 -33.58118 -33.25775 -31.42596 -31.14000 -27.99913 -27.65590 -25.08995 -23.95087 -23.10603 -22.68350 -21.48237 -19.61460 -19.51749 -17.54118 -17.04722 -16.95649 -16.25940 -15.66573 -15.22961 -14.90853 -14.28119 -14.13496 -13.92474 -13.70262 -13.56354 -13.41225 -13.04873 -12.97802 -12.74399 -12.59941 -12.27742 -12.05667 -12.01445 -11.70721 -11.65348 -11.60608 -11.47351 -11.22497 -10.80488 -10.73776 -10.45997 -10.08517 -9.66835 -9.04290 -8.94809 -8.74631 -8.66442 -8.53204 -8.50839 -6.74002 -6.52642 -4.23706 0.88788 1.53286 1.93364 2.20029 2.60808 2.77742 3.07237 3.42308 3.44016 3.61567 3.70969 4.14365 4.22893 4.43616 4.46564 4.66990 4.80678 4.94547 4.97306 5.10028 5.12829 5.23947 5.25556 5.34179 5.39251 5.41788 5.46811 5.50659 5.58570 5.69698 5.80120 5.89140 5.96082 6.14798 6.17289 6.26183 6.38104 6.75332 6.81902 7.37960 7.82702 8.23882 8.28624 8.66482 9.45409 10.87681 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.003076 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.920954 B = 9100.823412 C = 9696.239872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.095 0.905 4 S -0.215 6.215 5 C 0.060 3.940 6 C -0.589 4.589 7 H 0.061 0.939 8 C 0.026 3.974 9 N -0.906 5.906 10 Si 1.076 2.924 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.555 3.445 15 O -0.502 6.502 16 N -0.619 5.619 17 C 0.095 3.905 18 C -0.132 4.132 19 C -0.123 4.123 20 C 0.209 3.791 21 H 0.092 0.908 22 C -0.172 4.172 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.219 4.219 26 S 0.110 5.890 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -0.234 25.271 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.228 4.228 3 H 0.114 0.886 4 S 0.012 5.988 5 C -0.088 4.088 6 C -0.628 4.628 7 H 0.080 0.920 8 C -0.180 4.180 9 N -0.541 5.541 10 Si 0.903 3.097 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.343 3.657 15 O -0.374 6.374 16 N -0.356 5.356 17 C -0.028 4.028 18 C -0.170 4.170 19 C -0.161 4.161 20 C 0.103 3.897 21 H 0.110 0.890 22 C -0.291 4.291 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.355 4.355 26 S 0.374 5.626 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.470 -0.646 22.884 22.940 hybrid contribution 0.341 -0.072 2.312 2.338 sum -1.129 -0.718 25.196 25.231 Atomic orbital electron populations 1.21936 0.91478 1.03707 1.02396 1.23209 1.00415 1.02857 0.96327 0.88639 1.87225 1.74994 1.39073 0.97494 1.21230 0.98163 0.95445 0.93925 1.21523 1.40022 1.11541 0.89724 0.92046 1.25951 0.94285 0.94940 1.02806 1.70814 1.34964 1.18629 1.29722 0.83439 0.76299 0.75518 0.74466 1.20574 1.21102 1.21078 1.19650 0.77481 0.86363 0.82251 1.90742 1.45736 1.16621 1.84303 1.48588 1.66297 1.13635 1.07099 1.22368 0.99199 0.82436 0.98783 1.22766 1.01609 0.97349 0.95272 1.22743 1.03736 0.92996 0.96615 1.19937 0.96313 0.89885 0.83541 0.88973 1.24772 0.96869 1.00508 1.06927 1.20019 1.00864 0.92600 1.02729 1.20113 0.91887 1.00898 1.03390 1.25614 1.01752 0.99930 1.08180 1.84196 1.03466 1.12877 1.62106 0.90860 0.91012 0.92507 0.95814 0.95397 0.92253 0.89968 0.91158 0.89381 0.90126 0.90113 0.89428 0.84497 0.84449 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.07 37.16 0.34 -1.81 16 2 C -0.10 -1.71 2.59 -27.88 -0.07 -1.78 16 3 H 0.10 1.54 6.91 -51.92 -0.36 1.18 16 4 S -0.22 -5.02 20.32 -107.50 -2.18 -7.21 16 5 C 0.06 1.56 4.70 36.01 0.17 1.73 16 6 C -0.59 -17.08 9.13 -34.44 -0.31 -17.40 16 7 H 0.06 1.82 7.71 -52.48 -0.40 1.41 16 8 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 9 N -0.91 -27.09 13.65 55.43 0.76 -26.34 16 10 Si 1.08 25.30 29.90 -169.99 -5.08 20.22 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.56 9.53 6.81 -10.99 -0.07 9.46 16 15 O -0.50 -10.55 15.88 5.55 0.09 -10.46 16 16 N -0.62 -7.91 2.86 -164.46 -0.47 -8.38 16 17 C 0.10 0.87 6.24 -2.65 -0.02 0.86 16 18 C -0.13 -0.86 7.07 -24.70 -0.17 -1.04 16 19 C -0.12 -0.88 6.47 -24.89 -0.16 -1.05 16 20 C 0.21 2.30 3.28 -68.10 -0.22 2.08 16 21 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 22 C -0.17 -2.08 4.55 -36.00 -0.16 -2.24 16 23 C -0.13 -1.51 10.04 -41.21 -0.41 -1.93 16 24 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 25 C -0.22 -2.37 11.23 29.04 0.33 -2.05 16 26 S 0.11 1.30 23.10 -107.50 -2.48 -1.18 16 27 H 0.07 1.21 6.92 -51.93 -0.36 0.85 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.71 7.44 -51.93 -0.39 0.33 16 30 H 0.02 0.63 8.01 -51.92 -0.42 0.21 16 31 H 0.03 0.73 7.01 -51.92 -0.36 0.37 16 32 H 0.27 7.88 7.22 -40.82 -0.29 7.58 16 33 H 0.08 0.75 6.92 -51.93 -0.36 0.39 16 34 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -34.38 362.59 -11.15 -45.53 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.94 Total: -1.27 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.30 Total: -16.36 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.29 Total: -34.72 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -4.67 Total: -8.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.38 -11.15 -45.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.832 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds