Wall clock time and date at job start Tue Mar 31 2020 14:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47206 * 2 1 4 4 S 1.81397 * 109.47206 * 239.99974 * 2 1 3 5 5 C 1.81397 * 102.99868 * 64.99816 * 4 2 1 6 6 C 1.50706 * 109.47319 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47057 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 300.00068 * 10 8 6 13 13 H 1.48504 * 109.47102 * 60.00417 * 10 8 6 14 14 C 1.50701 * 109.47117 * 119.99933 * 2 1 3 15 15 O 1.21283 * 120.00011 * 99.99867 * 14 2 1 16 16 N 1.34773 * 120.00091 * 279.99874 * 14 2 1 17 17 C 1.47432 * 125.64952 * 359.69401 * 16 14 2 18 18 C 1.54681 * 104.94064 * 204.07227 * 17 16 14 19 19 C 1.55158 * 101.68223 * 323.27767 * 18 17 16 20 20 C 1.47025 * 125.64832 * 180.02562 * 16 14 2 21 21 H 1.08993 * 109.88327 * 59.48719 * 20 16 14 22 22 C 1.50705 * 109.88164 * 298.47503 * 20 16 14 23 23 C 1.33381 * 125.20513 * 140.00272 * 22 20 16 24 24 C 1.38418 * 114.92697 * 179.97438 * 23 22 20 25 25 C 1.33390 * 114.92026 * 359.97438 * 24 23 22 26 26 S 1.75887 * 125.20129 * 319.69562 * 22 20 16 27 27 H 1.08993 * 109.47295 * 59.99999 * 1 2 3 28 28 H 1.09006 * 109.46857 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47038 * 299.99745 * 1 2 3 30 30 H 1.09001 * 109.47514 * 60.00346 * 5 4 2 31 31 H 1.09006 * 109.47482 * 300.00049 * 5 4 2 32 32 H 0.97001 * 119.99646 * 359.97438 * 9 8 6 33 33 H 1.08998 * 110.36260 * 323.00515 * 17 16 14 34 34 H 1.08999 * 110.36350 * 85.32563 * 17 16 14 35 35 H 1.09006 * 111.10252 * 205.11058 * 18 17 16 36 36 H 1.09000 * 110.85240 * 81.33917 * 18 17 16 37 37 H 1.09003 * 110.71802 * 276.97810 * 19 18 17 38 38 H 1.08996 * 110.87793 * 153.77405 * 19 18 17 39 39 H 1.08002 * 122.53663 * 359.95176 * 23 22 20 40 40 H 1.08003 * 122.54534 * 180.02562 * 24 23 22 41 41 H 1.07997 * 125.20765 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8308 6 6 1.9973 -0.3695 -4.1513 7 1 2.5567 -1.2931 -4.1760 8 6 1.6774 0.2744 -5.3277 9 7 0.9967 1.3992 -5.2976 10 14 2.2122 -0.4502 -6.9642 11 1 1.7469 0.4260 -8.0692 12 1 3.6934 -0.5500 -7.0011 13 1 1.6208 -1.8031 -7.1235 14 6 2.0324 -0.7104 1.2305 15 8 2.4064 -1.8617 1.1558 16 7 2.0659 -0.0664 2.4139 17 6 1.6494 1.3288 2.6450 18 6 2.4222 1.7715 3.9097 19 6 2.4124 0.4706 4.7553 20 6 2.5304 -0.6367 3.6869 21 1 3.5692 -0.9533 3.5942 22 6 1.6683 -1.8131 4.0664 23 6 2.1123 -2.9503 4.6037 24 6 1.1328 -3.8915 4.8693 25 6 -0.1070 -3.5185 4.5481 26 16 -0.0784 -1.8935 3.8755 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0001 1.2085 -2.7142 31 1 0.4791 0.2881 -2.8037 32 1 0.7193 1.7756 -4.4477 33 1 1.9239 1.9525 1.7943 34 1 0.5751 1.3795 2.8226 35 1 1.9007 2.5773 4.4264 36 1 3.4411 2.0664 3.6584 37 1 1.4770 0.3765 5.3070 38 1 3.2639 0.4428 5.4351 39 1 3.1571 -3.1237 4.8152 40 1 1.3552 -4.8547 5.3044 41 1 -0.9933 -4.1205 4.6840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:08 Heat of formation + Delta-G solvation = -25.972994 kcal Electronic energy + Delta-G solvation = -22926.340105 eV Core-core repulsion = 19637.054656 eV Total energy + Delta-G solvation = -3289.285449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43704 -39.05336 -38.09785 -35.72085 -34.66497 -32.31531 -32.03979 -30.15404 -28.44597 -26.27252 -25.28141 -24.88354 -23.67251 -22.19577 -20.70579 -20.37216 -19.26548 -18.56559 -17.85330 -17.44608 -16.97751 -16.40100 -16.16469 -15.88853 -15.63757 -15.39400 -14.86017 -14.74980 -14.41529 -14.33739 -14.03119 -13.80439 -13.74914 -13.63669 -13.45195 -13.37143 -13.04461 -12.82109 -12.58270 -12.37575 -12.29897 -12.17397 -11.91412 -11.84722 -11.61104 -11.12533 -10.98484 -10.70562 -10.68996 -9.96991 -9.55864 -9.39160 -8.82586 -8.64366 -6.55195 0.02736 0.55040 0.69449 1.07358 1.42956 1.52250 1.59646 1.72812 1.78693 1.84112 1.97838 2.50245 3.03216 3.26268 3.52085 3.67751 3.69437 3.76100 3.85176 4.10541 4.19013 4.24376 4.40476 4.48729 4.52967 4.56901 4.60272 4.62919 4.67225 4.70596 4.85459 4.89127 4.96335 5.05854 5.11703 5.23710 5.28610 5.33594 5.54471 5.63808 5.97387 6.25815 6.36900 6.96065 7.21864 8.58948 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.003076 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.920954 B = 9100.823412 C = 9696.239872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 H 0.114 0.886 4 S -0.258 6.258 5 C 0.071 3.929 6 C -0.612 4.612 7 H 0.049 0.951 8 C -0.018 4.018 9 N -0.923 5.923 10 Si 1.121 2.879 11 H -0.274 1.274 12 H -0.270 1.270 13 H -0.271 1.271 14 C 0.555 3.445 15 O -0.551 6.551 16 N -0.610 5.610 17 C 0.081 3.919 18 C -0.120 4.120 19 C -0.112 4.112 20 C 0.201 3.799 21 H 0.082 0.918 22 C -0.185 4.185 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.223 4.223 26 S 0.088 5.912 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.014 0.986 31 H 0.019 0.981 32 H 0.259 0.741 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 0.504 27.030 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.213 4.213 3 H 0.132 0.868 4 S -0.031 6.031 5 C -0.077 4.077 6 C -0.651 4.651 7 H 0.067 0.933 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.941 3.059 11 H -0.199 1.199 12 H -0.195 1.195 13 H -0.196 1.196 14 C 0.342 3.658 15 O -0.428 6.428 16 N -0.344 5.344 17 C -0.041 4.041 18 C -0.158 4.158 19 C -0.150 4.150 20 C 0.096 3.904 21 H 0.100 0.900 22 C -0.303 4.303 23 C -0.175 4.175 24 C -0.171 4.171 25 C -0.359 4.359 26 S 0.351 5.649 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.166 0.834 40 H 0.177 0.823 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.541 0.136 24.701 24.750 hybrid contribution 0.350 -0.295 1.948 2.001 sum -1.191 -0.159 26.649 26.676 Atomic orbital electron populations 1.21859 0.89900 1.03239 1.03754 1.23236 1.01594 1.02833 0.93624 0.86753 1.87230 1.75793 1.40023 1.00095 1.20921 0.97323 0.95121 0.94317 1.21843 1.40244 1.11406 0.91558 0.93287 1.27430 0.93433 0.94563 1.06417 1.70925 1.36122 1.19536 1.29292 0.82891 0.76933 0.75497 0.70624 1.19915 1.19475 1.19585 1.19425 0.77379 0.85780 0.83182 1.90718 1.48289 1.18558 1.85187 1.48567 1.64536 1.14995 1.06348 1.22754 1.00606 0.80243 1.00467 1.22782 1.01781 0.97595 0.93651 1.22750 1.04973 0.91564 0.95684 1.20219 0.95494 0.91110 0.83592 0.89973 1.24940 0.96973 1.01118 1.07308 1.20325 1.01741 0.92685 1.02714 1.20415 0.91706 1.01699 1.03254 1.25930 1.02707 0.99485 1.07760 1.84146 1.03719 1.14181 1.62806 0.91843 0.92427 0.88583 0.96812 0.96250 0.93184 0.89725 0.89706 0.86531 0.89763 0.89569 0.87366 0.83447 0.82313 0.80074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.07 71.98 0.65 -3.32 16 2 C -0.08 -2.86 2.59 29.85 0.08 -2.78 16 3 H 0.11 3.58 6.91 -2.39 -0.02 3.57 16 4 S -0.26 -12.40 20.32 -56.49 -1.15 -13.55 16 5 C 0.07 3.79 4.70 71.24 0.34 4.13 16 6 C -0.61 -36.28 9.13 25.60 0.23 -36.05 16 7 H 0.05 2.97 7.71 -2.91 -0.02 2.95 16 8 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 9 N -0.92 -55.73 13.65 21.45 0.29 -55.43 16 10 Si 1.12 50.65 29.90 68.60 2.05 52.70 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 C 0.56 18.91 6.81 87.66 0.60 19.50 16 15 O -0.55 -23.60 15.88 -3.04 -0.05 -23.64 16 16 N -0.61 -14.72 2.86 -792.62 -2.26 -16.98 16 17 C 0.08 1.26 6.24 86.77 0.54 1.80 16 18 C -0.12 -1.13 7.07 31.91 0.23 -0.91 16 19 C -0.11 -1.27 6.47 31.78 0.21 -1.07 16 20 C 0.20 4.14 3.28 44.60 0.15 4.29 16 21 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 22 C -0.19 -4.28 4.55 24.59 0.11 -4.17 16 23 C -0.14 -3.19 10.04 21.21 0.21 -2.98 16 24 C -0.14 -2.85 10.18 21.22 0.22 -2.63 16 25 C -0.22 -4.57 11.23 66.72 0.75 -3.82 16 26 S 0.09 1.99 23.10 -56.49 -1.30 0.69 16 27 H 0.06 2.09 6.92 -2.39 -0.02 2.07 16 28 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.10 2.20 7.44 -2.39 -0.02 2.18 16 30 H 0.01 0.75 8.01 -2.39 -0.02 0.73 16 31 H 0.02 1.05 7.01 -2.39 -0.02 1.04 16 32 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16 33 H 0.08 1.31 6.92 -2.39 -0.02 1.29 16 34 H 0.08 1.13 7.88 -2.39 -0.02 1.11 16 35 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.94 7.85 -2.39 -0.02 0.92 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -76.63 362.59 3.47 -73.16 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.12 Total: 11.63 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.77 Total: -28.58 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.97 Total: -72.41 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Atomic # 16 Polarization: -10.41 SS G_CDS: -2.45 Total: -12.86 kcal Total: -76.63 3.47 -73.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.190 kcal (2) G-P(sol) polarization free energy of solvation -76.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds