Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 S 1.81401 * 109.47225 * 119.99897 * 2 1 3 5 5 C 1.81400 * 102.99962 * 295.00163 * 4 2 1 6 6 C 1.50703 * 109.47010 * 179.97438 * 5 4 2 7 7 H 1.08006 * 120.00159 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00089 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 C 1.50701 * 109.47476 * 240.00231 * 2 1 3 15 15 O 1.21277 * 120.00116 * 265.00292 * 14 2 1 16 16 N 1.34777 * 120.00083 * 84.99796 * 14 2 1 17 17 C 1.47427 * 125.64707 * 359.69363 * 16 14 2 18 18 C 1.55123 * 104.72228 * 155.81830 * 17 16 14 19 19 C 1.55155 * 101.48656 * 37.29600 * 18 17 16 20 20 C 1.47012 * 125.64716 * 180.02562 * 16 14 2 21 21 H 1.08998 * 109.88549 * 300.43783 * 20 16 14 22 22 C 1.50703 * 109.88722 * 61.60844 * 20 16 14 23 23 C 1.33390 * 125.20213 * 220.00369 * 22 20 16 24 24 C 1.38429 * 114.91975 * 179.97438 * 23 22 20 25 25 C 1.33393 * 114.91975 * 359.97438 * 24 23 22 26 26 S 1.75883 * 125.20226 * 39.68682 * 22 20 16 27 27 H 1.09002 * 109.47184 * 300.00057 * 1 2 3 28 28 H 1.09001 * 109.47124 * 60.00009 * 1 2 3 29 29 H 1.09000 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 60.00174 * 5 4 2 31 31 H 1.08996 * 109.47345 * 299.99729 * 5 4 2 32 32 H 0.96998 * 119.99255 * 0.02562 * 9 8 6 33 33 H 1.09004 * 110.36429 * 274.74988 * 17 16 14 34 34 H 1.08997 * 110.36311 * 37.06942 * 17 16 14 35 35 H 1.08998 * 111.19520 * 279.19540 * 18 17 16 36 36 H 1.08999 * 110.90734 * 155.27065 * 18 17 16 37 37 H 1.09006 * 110.72516 * 205.97332 * 19 18 17 38 38 H 1.08998 * 110.87513 * 82.76476 * 19 18 17 39 39 H 1.07990 * 122.54329 * 359.94763 * 23 22 20 40 40 H 1.07991 * 122.54218 * 180.02562 * 24 23 22 41 41 H 1.07995 * 125.20411 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2153 2.8309 6 6 1.9973 -0.3695 4.1512 7 1 2.5568 -1.2931 4.1760 8 6 1.6766 0.2738 5.3278 9 7 0.9950 1.3981 5.2978 10 14 2.2114 -0.4508 6.9643 11 1 1.1571 -1.3673 7.4682 12 1 2.4250 0.6442 7.9444 13 1 3.4772 -1.2055 6.7816 14 6 2.0324 -0.7103 -1.2305 15 8 2.3208 -1.8871 -1.1761 16 7 2.1611 -0.0380 -2.3914 17 6 1.8420 1.3863 -2.5994 18 6 2.7061 1.8103 -3.8159 19 6 2.6410 0.5369 -4.7000 20 6 2.6365 -0.6050 -3.6618 21 1 3.6459 -0.9973 -3.5380 22 6 1.7082 -1.7035 -4.1120 23 6 2.0912 -2.8549 -4.6661 24 6 1.0580 -3.7140 -4.9991 25 6 -0.1638 -3.2605 -4.7148 26 16 -0.0453 -1.6668 -3.9801 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.4791 0.2881 2.8037 31 1 2.0001 1.2085 2.7142 32 1 0.7176 1.7745 4.4479 33 1 0.7822 1.5088 -2.8227 34 1 2.1150 1.9685 -1.7194 35 1 3.7316 2.0250 -3.5152 36 1 2.2638 2.6646 -4.3283 37 1 3.5179 0.4692 -5.3440 38 1 1.7266 0.5221 -5.2930 39 1 3.1285 -3.0982 -4.8421 40 1 1.2284 -4.6787 -5.4536 41 1 -1.0847 -3.7922 -4.9032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -6.744503 kcal Electronic energy + Delta-G solvation = -22918.652856 eV Core-core repulsion = 19630.201216 eV Total energy + Delta-G solvation = -3288.451639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35445 -38.02271 -37.16911 -33.57584 -33.23573 -31.41905 -31.15473 -28.00465 -27.65085 -25.08201 -23.96089 -23.11128 -22.69457 -21.46588 -19.60316 -19.51362 -17.56435 -17.05008 -16.94954 -16.26608 -15.67915 -15.24255 -14.86021 -14.30644 -14.15006 -13.90552 -13.70788 -13.55335 -13.39499 -13.05189 -12.98482 -12.74686 -12.61382 -12.28476 -12.05670 -12.00648 -11.70772 -11.65838 -11.61154 -11.45159 -11.22958 -10.81122 -10.73546 -10.44505 -10.11099 -9.67434 -9.05373 -8.95144 -8.75425 -8.66452 -8.53322 -8.51350 -6.74834 -6.53057 -4.24132 0.88293 1.52699 1.92809 2.18114 2.59813 2.79075 3.08429 3.41409 3.44715 3.60251 3.70411 4.14918 4.22163 4.43900 4.46009 4.67622 4.80575 4.94126 4.97085 5.09501 5.12993 5.24253 5.25208 5.33866 5.39791 5.42095 5.46882 5.51079 5.59192 5.69792 5.80614 5.89607 5.95858 6.14756 6.16830 6.26710 6.37702 6.74853 6.81459 7.38025 7.82187 8.23814 8.28806 8.66299 9.44993 10.87316 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.003057 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.289030 B = 9156.684669 C = 9712.752903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 H 0.095 0.905 4 S -0.217 6.217 5 C 0.061 3.939 6 C -0.589 4.589 7 H 0.062 0.938 8 C 0.026 3.974 9 N -0.906 5.906 10 Si 1.079 2.921 11 H -0.285 1.285 12 H -0.282 1.282 13 H -0.285 1.285 14 C 0.556 3.444 15 O -0.502 6.502 16 N -0.619 5.619 17 C 0.095 3.905 18 C -0.131 4.131 19 C -0.123 4.123 20 C 0.209 3.791 21 H 0.093 0.907 22 C -0.172 4.172 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.219 4.219 26 S 0.110 5.890 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.268 0.732 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 0.110 -25.225 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.228 4.228 3 H 0.113 0.887 4 S 0.010 5.990 5 C -0.087 4.087 6 C -0.628 4.628 7 H 0.080 0.920 8 C -0.180 4.180 9 N -0.542 5.542 10 Si 0.906 3.094 11 H -0.211 1.211 12 H -0.208 1.208 13 H -0.211 1.211 14 C 0.343 3.657 15 O -0.375 6.375 16 N -0.356 5.356 17 C -0.028 4.028 18 C -0.169 4.169 19 C -0.161 4.161 20 C 0.103 3.897 21 H 0.111 0.889 22 C -0.291 4.291 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.355 4.355 26 S 0.373 5.627 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.913 -0.263 -22.853 22.873 hybrid contribution 0.250 -0.123 -2.308 2.325 sum -0.663 -0.385 -25.162 25.173 Atomic orbital electron populations 1.21924 0.91424 1.03733 1.02367 1.23207 1.00442 1.02808 0.96313 0.88718 1.87208 1.74985 1.39188 0.97601 1.21229 0.98174 0.95405 0.93875 1.21552 1.39999 1.11554 0.89696 0.91997 1.25953 0.94296 0.94934 1.02813 1.70784 1.34981 1.18660 1.29756 0.83400 0.76289 0.75520 0.74217 1.21127 1.20784 1.21128 1.19645 0.77106 0.86696 0.82251 1.90739 1.47771 1.15216 1.83763 1.48597 1.67404 1.11102 1.08530 1.22460 0.99495 0.81634 0.99239 1.22838 1.01065 0.97583 0.95461 1.22749 1.03729 0.92919 0.96725 1.19939 0.95461 0.90857 0.83420 0.88927 1.24788 0.96848 1.00699 1.06762 1.20024 1.00694 0.93016 1.02474 1.20116 0.91591 1.01183 1.03386 1.25613 1.01922 0.99996 1.07976 1.84192 1.02139 1.16030 1.60300 0.90853 0.92540 0.90970 0.95376 0.95794 0.92217 0.91132 0.89944 0.90047 0.89425 0.89459 0.90104 0.84485 0.84448 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.08 37.16 0.34 -1.81 16 2 C -0.10 -1.71 2.68 -27.88 -0.07 -1.78 16 3 H 0.09 1.52 6.71 -51.92 -0.35 1.18 16 4 S -0.22 -5.06 20.38 -107.50 -2.19 -7.25 16 5 C 0.06 1.57 4.70 36.01 0.17 1.74 16 6 C -0.59 -17.05 9.13 -34.44 -0.31 -17.36 16 7 H 0.06 1.83 7.71 -52.48 -0.40 1.43 16 8 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 9 N -0.91 -27.07 13.65 55.43 0.76 -26.31 16 10 Si 1.08 25.33 29.90 -169.99 -5.08 20.25 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.56 9.55 6.76 -10.98 -0.07 9.48 16 15 O -0.50 -10.55 15.97 5.56 0.09 -10.46 16 16 N -0.62 -7.95 2.84 -164.19 -0.47 -8.42 16 17 C 0.09 0.88 6.70 -2.41 -0.02 0.86 16 18 C -0.13 -0.87 7.10 -24.47 -0.17 -1.04 16 19 C -0.12 -0.89 6.47 -24.89 -0.16 -1.05 16 20 C 0.21 2.31 3.28 -68.10 -0.22 2.09 16 21 H 0.09 1.08 8.13 -51.93 -0.42 0.66 16 22 C -0.17 -2.07 4.54 -36.00 -0.16 -2.24 16 23 C -0.13 -1.51 10.04 -41.21 -0.41 -1.92 16 24 C -0.13 -1.42 10.18 -41.20 -0.42 -1.83 16 25 C -0.22 -2.36 11.23 29.04 0.33 -2.04 16 26 S 0.11 1.29 23.09 -107.50 -2.48 -1.19 16 27 H 0.07 1.22 6.92 -51.93 -0.36 0.86 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.74 7.01 -51.92 -0.36 0.37 16 31 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 32 H 0.27 7.88 7.22 -40.82 -0.29 7.58 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.76 6.82 -51.93 -0.35 0.41 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.57 7.84 -51.93 -0.41 0.17 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -34.28 363.90 -11.16 -45.45 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.97 Total: -1.27 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.30 Total: -16.28 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.29 Total: -34.73 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -4.67 Total: -8.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.28 -11.16 -45.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.701 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds