Wall clock time and date at job start Tue Mar 31 2020 14:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 S 1.81401 * 109.47225 * 119.99897 * 2 1 3 5 5 C 1.81400 * 102.99962 * 295.00163 * 4 2 1 6 6 C 1.50703 * 109.47010 * 179.97438 * 5 4 2 7 7 H 1.08006 * 120.00159 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00089 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99556 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99737 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99730 * 10 8 6 14 14 C 1.50701 * 109.47476 * 240.00231 * 2 1 3 15 15 O 1.21277 * 120.00116 * 265.00292 * 14 2 1 16 16 N 1.34777 * 120.00083 * 84.99796 * 14 2 1 17 17 C 1.47427 * 125.64707 * 359.69363 * 16 14 2 18 18 C 1.55123 * 104.72228 * 155.81830 * 17 16 14 19 19 C 1.55155 * 101.48656 * 37.29600 * 18 17 16 20 20 C 1.47012 * 125.64716 * 180.02562 * 16 14 2 21 21 H 1.08998 * 109.88549 * 300.43783 * 20 16 14 22 22 C 1.50703 * 109.88722 * 61.60844 * 20 16 14 23 23 C 1.33390 * 125.20213 * 220.00369 * 22 20 16 24 24 C 1.38429 * 114.91975 * 179.97438 * 23 22 20 25 25 C 1.33393 * 114.91975 * 359.97438 * 24 23 22 26 26 S 1.75883 * 125.20226 * 39.68682 * 22 20 16 27 27 H 1.09002 * 109.47184 * 300.00057 * 1 2 3 28 28 H 1.09001 * 109.47124 * 60.00009 * 1 2 3 29 29 H 1.09000 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 60.00174 * 5 4 2 31 31 H 1.08996 * 109.47345 * 299.99729 * 5 4 2 32 32 H 0.96998 * 119.99255 * 0.02562 * 9 8 6 33 33 H 1.09004 * 110.36429 * 274.74988 * 17 16 14 34 34 H 1.08997 * 110.36311 * 37.06942 * 17 16 14 35 35 H 1.08998 * 111.19520 * 279.19540 * 18 17 16 36 36 H 1.08999 * 110.90734 * 155.27065 * 18 17 16 37 37 H 1.09006 * 110.72516 * 205.97332 * 19 18 17 38 38 H 1.08998 * 110.87513 * 82.76476 * 19 18 17 39 39 H 1.07990 * 122.54329 * 359.94763 * 23 22 20 40 40 H 1.07991 * 122.54218 * 180.02562 * 24 23 22 41 41 H 1.07995 * 125.20411 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2153 2.8309 6 6 1.9973 -0.3695 4.1512 7 1 2.5568 -1.2931 4.1760 8 6 1.6766 0.2738 5.3278 9 7 0.9950 1.3981 5.2978 10 14 2.2114 -0.4508 6.9643 11 1 1.1571 -1.3673 7.4682 12 1 2.4250 0.6442 7.9444 13 1 3.4772 -1.2055 6.7816 14 6 2.0324 -0.7103 -1.2305 15 8 2.3208 -1.8871 -1.1761 16 7 2.1611 -0.0380 -2.3914 17 6 1.8420 1.3863 -2.5994 18 6 2.7061 1.8103 -3.8159 19 6 2.6410 0.5369 -4.7000 20 6 2.6365 -0.6050 -3.6618 21 1 3.6459 -0.9973 -3.5380 22 6 1.7082 -1.7035 -4.1120 23 6 2.0912 -2.8549 -4.6661 24 6 1.0580 -3.7140 -4.9991 25 6 -0.1638 -3.2605 -4.7148 26 16 -0.0453 -1.6668 -3.9801 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.4791 0.2881 2.8037 31 1 2.0001 1.2085 2.7142 32 1 0.7176 1.7745 4.4479 33 1 0.7822 1.5088 -2.8227 34 1 2.1150 1.9685 -1.7194 35 1 3.7316 2.0250 -3.5152 36 1 2.2638 2.6646 -4.3283 37 1 3.5179 0.4692 -5.3440 38 1 1.7266 0.5221 -5.2930 39 1 3.1285 -3.0982 -4.8421 40 1 1.2284 -4.6787 -5.4536 41 1 -1.0847 -3.7922 -4.9032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:11 Heat of formation + Delta-G solvation = -25.833517 kcal Electronic energy + Delta-G solvation = -22919.480617 eV Core-core repulsion = 19630.201216 eV Total energy + Delta-G solvation = -3289.279401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43297 -39.05640 -38.09237 -35.72218 -34.63960 -32.33089 -32.03531 -30.15728 -28.44202 -26.26780 -25.28410 -24.89215 -23.68059 -22.18701 -20.69376 -20.37176 -19.26979 -18.58590 -17.84422 -17.45639 -16.99657 -16.38848 -16.17480 -15.86039 -15.63977 -15.41053 -14.85117 -14.76294 -14.40326 -14.32889 -14.03865 -13.80156 -13.76376 -13.64832 -13.45941 -13.36340 -13.04822 -12.82167 -12.58127 -12.37354 -12.31142 -12.14386 -11.93208 -11.85461 -11.62035 -11.13977 -10.97810 -10.71010 -10.69259 -9.97441 -9.55893 -9.39269 -8.82708 -8.64939 -6.55280 0.02619 0.53301 0.69026 1.07173 1.43823 1.51856 1.59992 1.73149 1.78131 1.83736 1.97741 2.49802 3.03119 3.26113 3.51386 3.66401 3.69255 3.75539 3.85403 4.11113 4.19121 4.24337 4.41217 4.48215 4.51445 4.56777 4.60124 4.62773 4.67084 4.70394 4.85237 4.88796 4.95876 5.05608 5.11511 5.23382 5.28742 5.33556 5.54343 5.63514 5.97649 6.25585 6.37013 6.95793 7.21687 8.58847 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.003057 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.289030 B = 9156.684669 C = 9712.752903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.114 0.886 4 S -0.260 6.260 5 C 0.072 3.928 6 C -0.611 4.611 7 H 0.049 0.951 8 C -0.018 4.018 9 N -0.923 5.923 10 Si 1.123 2.877 11 H -0.269 1.269 12 H -0.274 1.274 13 H -0.274 1.274 14 C 0.556 3.444 15 O -0.551 6.551 16 N -0.610 5.610 17 C 0.081 3.919 18 C -0.120 4.120 19 C -0.112 4.112 20 C 0.201 3.799 21 H 0.082 0.918 22 C -0.186 4.186 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.223 4.223 26 S 0.089 5.911 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 0.886 -26.941 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.213 4.213 3 H 0.132 0.868 4 S -0.033 6.033 5 C -0.076 4.076 6 C -0.650 4.650 7 H 0.067 0.933 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.943 3.057 11 H -0.195 1.195 12 H -0.199 1.199 13 H -0.199 1.199 14 C 0.343 3.657 15 O -0.428 6.428 16 N -0.345 5.345 17 C -0.041 4.041 18 C -0.158 4.158 19 C -0.150 4.150 20 C 0.096 3.904 21 H 0.100 0.900 22 C -0.304 4.304 23 C -0.175 4.175 24 C -0.171 4.171 25 C -0.358 4.358 26 S 0.352 5.648 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.165 0.835 40 H 0.177 0.823 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.946 0.559 -24.624 24.648 hybrid contribution 0.250 -0.356 -1.958 2.006 sum -0.695 0.202 -26.581 26.591 Atomic orbital electron populations 1.21846 0.89946 1.03221 1.03700 1.23237 1.01561 1.02837 0.93633 0.86762 1.87210 1.75762 1.40137 1.00167 1.20920 0.97328 0.95105 0.94254 1.21859 1.40214 1.11387 0.91536 0.93319 1.27426 0.93447 0.94562 1.06412 1.70895 1.36119 1.19548 1.29326 0.82852 0.76817 0.75475 0.70522 1.19472 1.19855 1.19942 1.19419 0.77062 0.86117 0.83126 1.90714 1.50291 1.17106 1.84662 1.48580 1.65516 1.12566 1.07823 1.22843 1.01135 0.79324 1.00788 1.22853 1.00922 0.98028 0.93964 1.22754 1.05026 0.91349 0.95863 1.20216 0.94594 0.92220 0.83392 0.89974 1.24945 0.96977 1.01277 1.07178 1.20329 1.01603 0.93064 1.02454 1.20416 0.91369 1.02001 1.03289 1.25930 1.02940 0.99464 1.07513 1.84140 1.02355 1.17308 1.61016 0.91798 0.88703 0.92439 0.96246 0.96743 0.93147 0.89641 0.89797 0.89741 0.86569 0.87410 0.89524 0.83468 0.82314 0.80049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.08 71.98 0.65 -3.35 16 2 C -0.08 -2.85 2.68 29.85 0.08 -2.77 16 3 H 0.11 3.57 6.71 -2.39 -0.02 3.55 16 4 S -0.26 -12.44 20.38 -56.49 -1.15 -13.59 16 5 C 0.07 3.83 4.70 71.24 0.34 4.16 16 6 C -0.61 -36.19 9.13 25.60 0.23 -35.96 16 7 H 0.05 2.96 7.71 -2.91 -0.02 2.93 16 8 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 9 N -0.92 -55.59 13.65 21.45 0.29 -55.30 16 10 Si 1.12 50.70 29.90 68.60 2.05 52.75 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 C 0.56 18.95 6.76 87.66 0.59 19.54 16 15 O -0.55 -23.57 15.97 -3.02 -0.05 -23.62 16 16 N -0.61 -14.83 2.84 -791.76 -2.25 -17.08 16 17 C 0.08 1.28 6.70 86.93 0.58 1.86 16 18 C -0.12 -1.16 7.10 32.06 0.23 -0.93 16 19 C -0.11 -1.29 6.47 31.79 0.21 -1.08 16 20 C 0.20 4.16 3.28 44.60 0.15 4.31 16 21 H 0.08 1.87 8.13 -2.39 -0.02 1.85 16 22 C -0.19 -4.28 4.54 24.59 0.11 -4.16 16 23 C -0.14 -3.18 10.04 21.22 0.21 -2.96 16 24 C -0.14 -2.83 10.18 21.22 0.22 -2.61 16 25 C -0.22 -4.51 11.23 66.72 0.75 -3.76 16 26 S 0.09 1.99 23.09 -56.49 -1.30 0.68 16 27 H 0.06 2.12 6.92 -2.39 -0.02 2.10 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.02 1.05 7.01 -2.39 -0.02 1.04 16 31 H 0.01 0.78 8.01 -2.39 -0.02 0.76 16 32 H 0.26 15.56 7.22 -92.71 -0.67 14.89 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.33 6.82 -2.39 -0.02 1.32 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.09 0.95 7.84 -2.39 -0.02 0.93 16 39 H 0.15 2.80 8.06 -2.92 -0.02 2.78 16 40 H 0.16 2.39 8.06 -2.92 -0.02 2.37 16 41 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -76.30 363.90 3.52 -72.78 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.12 Total: 11.69 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.81 Total: -28.32 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.96 Total: -72.38 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -2.46 Total: -12.91 kcal Total: -76.30 3.52 -72.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.946 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds