Wall clock time and date at job start Tue Mar 31 2020 14:03:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50701 * 109.46871 * 2 1
4 4 O 1.21285 * 119.99908 * 0.02562 * 3 2 1
5 5 N 1.34780 * 119.99970 * 180.02562 * 3 2 1
6 6 C 1.39966 * 119.99879 * 175.44992 * 5 3 2
7 7 C 1.38916 * 120.03088 * 35.10639 * 6 5 3
8 8 C 1.38152 * 120.07994 * 179.97438 * 7 6 5
9 9 C 1.38257 * 120.12396 * 0.02562 * 8 7 6
10 10 Cl 1.73602 * 119.97237 * 179.97438 * 9 8 7
11 11 C 1.38985 * 120.05299 * 0.02562 * 9 8 7
12 12 N 1.40003 * 120.03655 * 179.97438 * 11 9 8
13 13 C 1.34774 * 119.99927 * 214.44262 * 12 11 9
14 14 O 1.21595 * 119.99743 * 355.44790 * 13 12 11
15 15 N 1.34776 * 120.00459 * 175.44565 * 13 12 11
16 16 C 1.46494 * 120.00540 * 180.02562 * 15 13 12
17 17 C 1.50700 * 109.47412 * 180.02562 * 16 15 13
18 18 H 1.08000 * 119.99662 * 0.02562 * 17 16 15
19 19 C 1.37875 * 119.99818 * 179.97438 * 17 16 15
20 20 N 1.31510 * 120.00314 * 0.02562 * 19 17 16
21 21 Si 1.86798 * 119.99740 * 180.02562 * 19 17 16
22 22 H 1.48496 * 109.47451 * 89.99942 * 21 19 17
23 23 H 1.48499 * 109.47174 * 210.00328 * 21 19 17
24 24 H 1.48509 * 109.47055 * 330.00422 * 21 19 17
25 25 C 1.38730 * 119.91832 * 359.69991 * 11 9 8
26 26 H 1.08996 * 109.46963 * 299.99290 * 1 2 3
27 27 H 1.08994 * 109.47486 * 59.99780 * 1 2 3
28 28 H 1.09004 * 109.46813 * 180.02562 * 1 2 3
29 29 H 1.08994 * 109.47486 * 120.00220 * 2 1 3
30 30 H 1.09010 * 109.47042 * 240.00640 * 2 1 3
31 31 H 0.96999 * 119.99932 * 355.45103 * 5 3 2
32 32 H 1.08007 * 119.95672 * 0.02562 * 7 6 5
33 33 H 1.08002 * 119.93474 * 180.02562 * 8 7 6
34 34 H 0.96996 * 120.00267 * 34.45115 * 12 11 9
35 35 H 0.97004 * 119.99010 * 0.02562 * 15 13 12
36 36 H 1.09006 * 109.47031 * 300.00099 * 16 15 13
37 37 H 1.09004 * 109.46856 * 59.99677 * 16 15 13
38 38 H 0.97000 * 119.99841 * 180.02562 * 20 19 17
39 39 H 1.08008 * 120.06211 * 180.27705 * 25 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2441 2.3427 0.0005
5 7 3.3574 1.6672 -0.0005
6 6 3.8245 2.9831 -0.0967
7 6 3.1194 4.0169 0.5065
8 6 3.5799 5.3161 0.4126
9 6 4.7431 5.5915 -0.2820
10 17 5.3178 7.2256 -0.3980
11 6 5.4522 4.5614 -0.8884
12 7 6.6298 4.8408 -1.5921
13 6 6.9452 4.1243 -2.6892
14 8 6.2513 3.1824 -3.0205
15 7 8.0298 4.4519 -3.4193
16 6 8.3724 3.6735 -4.6121
17 6 9.6186 4.2408 -5.2414
18 1 10.1069 5.0955 -4.7970
19 6 10.1360 3.6681 -6.3839
20 7 9.5417 2.6271 -6.9248
21 14 11.6811 4.3710 -7.1635
22 1 12.8749 3.7024 -6.5865
23 1 11.6448 4.1398 -8.6300
24 1 11.7522 5.8296 -6.8939
25 6 4.9947 3.2554 -0.7906
26 1 -0.3633 0.5137 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5138 0.8899
30 1 1.8934 -0.5138 -0.8901
31 1 3.9873 0.9325 0.0657
32 1 2.2106 3.8047 1.0501
33 1 3.0301 6.1180 0.8828
34 1 7.2187 5.5498 -1.2901
35 1 8.5835 5.2031 -3.1547
36 1 8.5484 2.6353 -4.3303
37 1 7.5500 3.7218 -5.3259
38 1 9.9059 2.2240 -7.7284
39 1 5.5463 2.4525 -1.2571
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000488359550.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:03:35
Heat of formation + Delta-G solvation = -50.245400 kcal
Electronic energy + Delta-G solvation = -24208.276411 eV
Core-core repulsion = 20369.601511 eV
Total energy + Delta-G solvation = -3838.674901 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.86919 -39.94532 -38.34326 -36.55695 -35.25110 -34.35963 -34.00429 -33.06408
-32.40996 -30.09964 -29.14552 -27.03444 -25.07767 -23.62599 -22.53082 -22.09979
-20.70200 -20.08449 -18.55836 -18.03654 -17.45066 -16.67359 -16.17157 -16.06403
-15.75068 -15.34344 -14.86959 -14.59643 -14.43663 -14.05760 -13.82750 -13.56223
-13.41165 -13.09428 -12.72888 -12.56299 -12.10761 -12.05490 -12.04951 -12.02759
-11.72065 -11.47024 -11.02478 -10.99561 -10.94615 -10.53672 -10.34471 -10.15302
-9.83350 -9.51178 -9.44574 -8.80893 -8.43715 -8.10280 -7.79194 -6.21163
-4.28181 1.00218 1.30423 2.10371 2.33960 2.76133 3.09282 3.21745
3.28552 3.31243 3.48885 3.84503 4.28003 4.35195 4.71373 4.75734
4.78591 4.83816 5.14897 5.15444 5.17096 5.27767 5.34174 5.49353
5.59453 5.62700 5.89825 5.92532 6.09966 6.20496 6.28352 6.56615
6.91415 6.96841 7.16322 7.32425 7.43094 7.46422 7.74865 7.88245
7.93181 8.61392 8.76841 9.09635 9.38730 10.88977
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.013021 B = 0.002888 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2149.851385 B = 9691.655978 C =11628.107538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.143 4.143
3 C 0.512 3.488
4 O -0.521 6.521
5 N -0.671 5.671
6 C 0.165 3.835
7 C -0.135 4.135
8 C -0.074 4.074
9 C -0.086 4.086
10 Cl -0.071 7.071
11 C 0.211 3.789
12 N -0.691 5.691
13 C 0.693 3.307
14 O -0.582 6.582
15 N -0.719 5.719
16 C 0.266 3.734
17 C -0.544 4.544
18 H 0.064 0.936
19 C 0.065 3.935
20 N -0.885 5.885
21 Si 0.905 3.095
22 H -0.278 1.278
23 H -0.284 1.284
24 H -0.273 1.273
25 C -0.138 4.138
26 H 0.062 0.938
27 H 0.063 0.937
28 H 0.062 0.938
29 H 0.096 0.904
30 H 0.099 0.901
31 H 0.413 0.587
32 H 0.145 0.855
33 H 0.137 0.863
34 H 0.406 0.594
35 H 0.390 0.610
36 H 0.028 0.972
37 H 0.028 0.972
38 H 0.266 0.734
39 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.288 -0.708 18.425 22.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.183 4.183
3 C 0.301 3.699
4 O -0.396 6.396
5 N -0.316 5.316
6 C 0.070 3.930
7 C -0.156 4.156
8 C -0.094 4.094
9 C -0.117 4.117
10 Cl -0.042 7.042
11 C 0.112 3.888
12 N -0.339 5.339
13 C 0.393 3.607
14 O -0.460 6.460
15 N -0.370 5.370
16 C 0.146 3.854
17 C -0.582 4.582
18 H 0.082 0.918
19 C -0.139 4.139
20 N -0.522 5.522
21 Si 0.732 3.268
22 H -0.204 1.204
23 H -0.210 1.210
24 H -0.197 1.197
25 C -0.161 4.161
26 H 0.081 0.919
27 H 0.082 0.918
28 H 0.081 0.919
29 H 0.114 0.886
30 H 0.117 0.883
31 H 0.250 0.750
32 H 0.162 0.838
33 H 0.155 0.845
34 H 0.243 0.757
35 H 0.222 0.778
36 H 0.046 0.954
37 H 0.046 0.954
38 H 0.076 0.924
39 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -13.362 -0.977 17.784 22.266
hybrid contribution 1.880 0.837 -0.359 2.089
sum -11.482 -0.140 17.426 20.869
Atomic orbital electron populations
1.21543 0.92684 1.01828 1.03502 1.21655 0.98922 0.92885 1.04868
1.21014 0.81437 0.92426 0.75072 1.90704 1.55041 1.46293 1.47517
1.43553 1.08062 1.07137 1.72869 1.17604 0.94494 0.84587 0.96330
1.21097 1.01670 0.91083 1.01764 1.20683 0.93611 0.97076 0.98032
1.20715 0.97925 0.84674 1.08337 1.98348 1.88692 1.19733 1.97430
1.16874 0.87384 0.91328 0.93192 1.42822 1.23021 1.39761 1.28306
1.16118 0.82586 0.82636 0.79379 1.90869 1.52967 1.30366 1.71764
1.45790 1.26189 1.35434 1.29591 1.19072 0.95659 0.90968 0.79750
1.21201 1.10301 1.15772 1.10975 0.91835 1.24935 0.97663 0.94807
0.96536 1.69970 1.39724 1.21471 1.21037 0.86396 0.82574 0.79347
0.78480 1.20438 1.20967 1.19735 1.21075 0.98567 0.96390 1.00070
0.91933 0.91774 0.91856 0.88558 0.88283 0.75043 0.83752 0.84502
0.75743 0.77774 0.95448 0.95430 0.92385 0.82527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16
2 C -0.14 -0.95 6.42 -27.88 -0.18 -1.13 16
3 C 0.51 5.45 7.67 -10.98 -0.08 5.37 16
4 O -0.52 -7.33 13.42 5.55 0.07 -7.26 16
5 N -0.67 -6.94 5.34 -9.87 -0.05 -6.99 16
6 C 0.16 2.16 6.30 -83.70 -0.53 1.64 16
7 C -0.13 -1.72 8.69 -39.36 -0.34 -2.06 16
8 C -0.07 -0.90 9.81 -39.61 -0.39 -1.28 16
9 C -0.09 -1.15 6.34 -39.30 -0.25 -1.40 16
10 Cl -0.07 -0.85 27.94 -51.86 -1.45 -2.30 16
11 C 0.21 3.18 6.30 -83.67 -0.53 2.66 16
12 N -0.69 -10.72 5.06 -14.21 -0.07 -10.80 16
13 C 0.69 13.78 8.41 -86.92 -0.73 13.05 16
14 O -0.58 -13.53 13.76 5.28 0.07 -13.45 16
15 N -0.72 -14.82 5.55 -66.41 -0.37 -15.19 16
16 C 0.27 6.89 5.43 -5.20 -0.03 6.86 16
17 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16
18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16
19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
20 N -0.88 -25.62 13.29 55.43 0.74 -24.88 16
21 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16
22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
25 C -0.14 -2.07 8.61 -39.21 -0.34 -2.41 16
26 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16
27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16
28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16
31 H 0.41 3.03 8.82 -40.82 -0.36 2.67 16
32 H 0.14 1.82 6.22 -52.48 -0.33 1.49 16
33 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16
34 H 0.41 5.23 8.07 -40.82 -0.33 4.90 16
35 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16
36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16
37 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16
38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
39 H 0.16 2.59 6.19 -52.48 -0.33 2.26 16
LS Contribution 351.65 15.07 5.30 5.30
Total: -1.00 -33.39 351.65 -8.84 -42.23
By element:
Atomic # 1 Polarization: 14.86 SS G_CDS: -4.59 Total: 10.26 kcal
Atomic # 6 Polarization: 11.00 SS G_CDS: -3.47 Total: 7.53 kcal
Atomic # 7 Polarization: -58.10 SS G_CDS: 0.24 Total: -57.85 kcal
Atomic # 8 Polarization: -20.86 SS G_CDS: 0.15 Total: -20.71 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal
Atomic # 17 Polarization: -0.85 SS G_CDS: -1.45 Total: -2.30 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -33.39 -8.84 -42.23 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000488359550.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.011 kcal
(2) G-P(sol) polarization free energy of solvation -33.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.403 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds