Wall clock time and date at job start Tue Mar 31 2020 14:03:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50701 * 109.46871 * 2 1
4 4 O 1.21285 * 119.99908 * 0.02562 * 3 2 1
5 5 N 1.34780 * 119.99970 * 180.02562 * 3 2 1
6 6 C 1.39966 * 119.99879 * 175.44992 * 5 3 2
7 7 C 1.38916 * 120.03088 * 35.10639 * 6 5 3
8 8 C 1.38152 * 120.07994 * 179.97438 * 7 6 5
9 9 C 1.38257 * 120.12396 * 0.02562 * 8 7 6
10 10 Cl 1.73602 * 119.97237 * 179.97438 * 9 8 7
11 11 C 1.38985 * 120.05299 * 0.02562 * 9 8 7
12 12 N 1.40003 * 120.03655 * 179.97438 * 11 9 8
13 13 C 1.34774 * 119.99927 * 214.44262 * 12 11 9
14 14 O 1.21595 * 119.99743 * 355.44790 * 13 12 11
15 15 N 1.34776 * 120.00459 * 175.44565 * 13 12 11
16 16 C 1.46494 * 120.00540 * 180.02562 * 15 13 12
17 17 C 1.50700 * 109.47412 * 180.02562 * 16 15 13
18 18 H 1.08000 * 119.99662 * 0.02562 * 17 16 15
19 19 C 1.37875 * 119.99818 * 179.97438 * 17 16 15
20 20 N 1.31510 * 120.00314 * 0.02562 * 19 17 16
21 21 Si 1.86798 * 119.99740 * 180.02562 * 19 17 16
22 22 H 1.48496 * 109.47451 * 89.99942 * 21 19 17
23 23 H 1.48499 * 109.47174 * 210.00328 * 21 19 17
24 24 H 1.48509 * 109.47055 * 330.00422 * 21 19 17
25 25 C 1.38730 * 119.91832 * 359.69991 * 11 9 8
26 26 H 1.08996 * 109.46963 * 299.99290 * 1 2 3
27 27 H 1.08994 * 109.47486 * 59.99780 * 1 2 3
28 28 H 1.09004 * 109.46813 * 180.02562 * 1 2 3
29 29 H 1.08994 * 109.47486 * 120.00220 * 2 1 3
30 30 H 1.09010 * 109.47042 * 240.00640 * 2 1 3
31 31 H 0.96999 * 119.99932 * 355.45103 * 5 3 2
32 32 H 1.08007 * 119.95672 * 0.02562 * 7 6 5
33 33 H 1.08002 * 119.93474 * 180.02562 * 8 7 6
34 34 H 0.96996 * 120.00267 * 34.45115 * 12 11 9
35 35 H 0.97004 * 119.99010 * 0.02562 * 15 13 12
36 36 H 1.09006 * 109.47031 * 300.00099 * 16 15 13
37 37 H 1.09004 * 109.46856 * 59.99677 * 16 15 13
38 38 H 0.97000 * 119.99841 * 180.02562 * 20 19 17
39 39 H 1.08008 * 120.06211 * 180.27705 * 25 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2441 2.3427 0.0005
5 7 3.3574 1.6672 -0.0005
6 6 3.8245 2.9831 -0.0967
7 6 3.1194 4.0169 0.5065
8 6 3.5799 5.3161 0.4126
9 6 4.7431 5.5915 -0.2820
10 17 5.3178 7.2256 -0.3980
11 6 5.4522 4.5614 -0.8884
12 7 6.6298 4.8408 -1.5921
13 6 6.9452 4.1243 -2.6892
14 8 6.2513 3.1824 -3.0205
15 7 8.0298 4.4519 -3.4193
16 6 8.3724 3.6735 -4.6121
17 6 9.6186 4.2408 -5.2414
18 1 10.1069 5.0955 -4.7970
19 6 10.1360 3.6681 -6.3839
20 7 9.5417 2.6271 -6.9248
21 14 11.6811 4.3710 -7.1635
22 1 12.8749 3.7024 -6.5865
23 1 11.6448 4.1398 -8.6300
24 1 11.7522 5.8296 -6.8939
25 6 4.9947 3.2554 -0.7906
26 1 -0.3633 0.5137 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5138 0.8899
30 1 1.8934 -0.5138 -0.8901
31 1 3.9873 0.9325 0.0657
32 1 2.2106 3.8047 1.0501
33 1 3.0301 6.1180 0.8828
34 1 7.2187 5.5498 -1.2901
35 1 8.5835 5.2031 -3.1547
36 1 8.5484 2.6353 -4.3303
37 1 7.5500 3.7218 -5.3259
38 1 9.9059 2.2240 -7.7284
39 1 5.5463 2.4525 -1.2571
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000488359550.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:03:34
Heat of formation + Delta-G solvation = -73.804997 kcal
Electronic energy + Delta-G solvation = -24209.298032 eV
Core-core repulsion = 20369.601511 eV
Total energy + Delta-G solvation = -3839.696521 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.098 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.98058 -41.20103 -39.56119 -37.56537 -36.56099 -36.04777 -35.23056 -34.37557
-33.70917 -31.26641 -30.33204 -28.89628 -25.82296 -25.21827 -23.98509 -23.15169
-22.10098 -21.19994 -20.00209 -19.32139 -18.36797 -18.02667 -17.70226 -17.17178
-16.99092 -16.58825 -16.53151 -16.06316 -15.51970 -15.27947 -15.12993 -14.73973
-14.52935 -14.34438 -14.05032 -13.98959 -13.65232 -13.27268 -13.07827 -12.91524
-12.75298 -12.71616 -12.63394 -12.22828 -12.04780 -12.02115 -11.80314 -11.48604
-11.17637 -11.10881 -10.83023 -10.79588 -9.98526 -9.46851 -9.01377 -8.29129
-6.45044 -0.05483 0.18933 1.05380 1.43337 1.46125 1.48687 1.54363
1.59922 1.95638 2.12230 2.38576 2.63078 3.06415 3.30651 3.61860
3.74971 4.09371 4.14874 4.19435 4.26182 4.27758 4.51626 4.73312
4.83993 4.99509 5.01007 5.06492 5.10247 5.15892 5.21227 5.25565
5.34830 5.42681 5.44817 5.58997 5.81527 5.83798 6.05929 6.35536
6.65136 7.05706 7.07422 7.24393 7.51463 8.82915
Molecular weight = 325.10amu
Principal moments of inertia in cm(-1)
A = 0.013021 B = 0.002888 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2149.851385 B = 9691.655978 C =11628.107538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.136 4.136
3 C 0.507 3.493
4 O -0.559 6.559
5 N -0.666 5.666
6 C 0.164 3.836
7 C -0.134 4.134
8 C -0.066 4.066
9 C -0.086 4.086
10 Cl -0.057 7.057
11 C 0.187 3.813
12 N -0.672 5.672
13 C 0.695 3.305
14 O -0.618 6.618
15 N -0.714 5.714
16 C 0.286 3.714
17 C -0.556 4.556
18 H 0.083 0.917
19 C 0.007 3.993
20 N -0.929 5.929
21 Si 0.983 3.017
22 H -0.270 1.270
23 H -0.285 1.285
24 H -0.258 1.258
25 C -0.152 4.152
26 H 0.053 0.947
27 H 0.042 0.958
28 H 0.086 0.914
29 H 0.129 0.871
30 H 0.114 0.886
31 H 0.427 0.573
32 H 0.149 0.851
33 H 0.165 0.835
34 H 0.420 0.580
35 H 0.407 0.593
36 H -0.006 1.006
37 H -0.011 1.011
38 H 0.269 0.731
39 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.840 0.215 19.683 22.971
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.175 4.175
3 C 0.297 3.703
4 O -0.437 6.437
5 N -0.312 5.312
6 C 0.068 3.932
7 C -0.155 4.155
8 C -0.085 4.085
9 C -0.116 4.116
10 Cl -0.028 7.028
11 C 0.090 3.910
12 N -0.321 5.321
13 C 0.396 3.604
14 O -0.499 6.499
15 N -0.367 5.367
16 C 0.163 3.837
17 C -0.594 4.594
18 H 0.101 0.899
19 C -0.193 4.193
20 N -0.567 5.567
21 Si 0.806 3.194
22 H -0.195 1.195
23 H -0.210 1.210
24 H -0.181 1.181
25 C -0.175 4.175
26 H 0.073 0.927
27 H 0.061 0.939
28 H 0.105 0.895
29 H 0.147 0.853
30 H 0.132 0.868
31 H 0.266 0.734
32 H 0.166 0.834
33 H 0.182 0.818
34 H 0.259 0.741
35 H 0.242 0.758
36 H 0.012 0.988
37 H 0.007 0.993
38 H 0.078 0.922
39 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -12.906 -0.026 19.115 23.064
hybrid contribution 1.615 0.535 -0.654 1.822
sum -11.291 0.508 18.462 21.647
Atomic orbital electron populations
1.21557 0.93053 1.02899 1.02076 1.21741 0.98440 0.90258 1.07083
1.21826 0.80907 0.93784 0.73759 1.90680 1.55862 1.47795 1.49316
1.43626 1.08589 1.06637 1.72301 1.17705 0.93778 0.86091 0.95647
1.21252 1.01536 0.91332 1.01424 1.20998 0.92955 0.97581 0.96980
1.20737 0.97992 0.84943 1.07925 1.98353 1.88593 1.18483 1.97380
1.17068 0.87621 0.92067 0.94270 1.42440 1.23530 1.39254 1.26879
1.16158 0.81850 0.82418 0.80009 1.90849 1.54024 1.32074 1.72944
1.45358 1.27054 1.35660 1.28592 1.18490 0.94505 0.90068 0.80626
1.21585 1.10301 1.16265 1.11220 0.89860 1.26000 1.01256 0.94960
0.97116 1.70124 1.41770 1.23123 1.21686 0.85180 0.77936 0.79197
0.77050 1.19528 1.21026 1.18139 1.20951 0.99428 0.96080 1.01038
0.92749 0.93859 0.89474 0.85324 0.86789 0.73440 0.83354 0.81772
0.74079 0.75783 0.98804 0.99314 0.92208 0.84549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16
2 C -0.14 -1.55 6.42 29.85 0.19 -1.36 16
3 C 0.51 10.38 7.67 87.66 0.67 11.06 16
4 O -0.56 -15.63 13.42 -3.05 -0.04 -15.67 16
5 N -0.67 -13.40 5.34 -303.53 -1.62 -15.02 16
6 C 0.16 4.26 6.30 38.13 0.24 4.50 16
7 C -0.13 -3.28 8.69 22.41 0.19 -3.09 16
8 C -0.07 -1.47 9.81 22.25 0.22 -1.25 16
9 C -0.09 -2.17 6.34 22.45 0.14 -2.03 16
10 Cl -0.06 -1.26 27.94 -2.72 -0.08 -1.34 16
11 C 0.19 5.61 6.30 38.13 0.24 5.85 16
12 N -0.67 -20.74 5.06 -317.14 -1.60 -22.35 16
13 C 0.70 28.28 8.41 179.06 1.51 29.78 16
14 O -0.62 -29.99 13.76 -4.01 -0.06 -30.05 16
15 N -0.71 -29.88 5.55 -482.29 -2.68 -32.56 16
16 C 0.29 15.35 5.43 85.63 0.46 15.81 16
17 C -0.56 -29.63 9.28 25.60 0.24 -29.39 16
18 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16
19 C 0.01 0.36 5.46 84.65 0.46 0.82 16
20 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16
21 Si 0.98 41.70 29.54 68.60 2.03 43.73 16
22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16
23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16
24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16
25 C -0.15 -4.63 8.61 22.51 0.19 -4.44 16
26 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16
27 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16
28 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16
29 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16
31 H 0.43 5.98 8.82 -92.71 -0.82 5.17 16
32 H 0.15 3.58 6.22 -2.91 -0.02 3.56 16
33 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16
34 H 0.42 10.39 8.07 -92.71 -0.75 9.64 16
35 H 0.41 14.05 8.34 -92.71 -0.77 13.28 16
36 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16
37 H -0.01 -0.68 8.14 -2.38 -0.02 -0.69 16
38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
39 H 0.14 4.73 6.19 -2.91 -0.02 4.72 16
Total: -1.00 -74.46 351.65 0.46 -74.00
By element:
Atomic # 1 Polarization: 30.02 SS G_CDS: -1.21 Total: 28.81 kcal
Atomic # 6 Polarization: 19.71 SS G_CDS: 5.43 Total: 25.14 kcal
Atomic # 7 Polarization: -119.00 SS G_CDS: -5.62 Total: -124.62 kcal
Atomic # 8 Polarization: -45.62 SS G_CDS: -0.10 Total: -45.71 kcal
Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal
Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal
Total: -74.46 0.46 -74.00 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000488359550.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.194 kcal
(2) G-P(sol) polarization free energy of solvation -74.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds