Wall clock time and date at job start Tue Mar 31 2020 13:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47357 * 75.80981 * 3 2 1 5 5 C 1.36868 * 119.99778 * 284.44981 * 4 3 2 6 6 H 1.08001 * 119.99852 * 291.89228 * 5 4 3 7 7 C 1.39040 * 120.00223 * 111.89679 * 5 4 3 8 8 N 1.31370 * 120.00537 * 63.04561 * 7 5 4 9 9 Si 1.86804 * 120.00208 * 243.04808 * 7 5 4 10 10 H 1.48506 * 109.47042 * 59.99320 * 9 7 5 11 11 H 1.48493 * 109.47460 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46945 * 300.00175 * 9 7 5 13 13 C 1.34775 * 120.00398 * 104.44438 * 4 3 2 14 14 O 1.21623 * 120.00591 * 191.61916 * 13 4 3 15 15 C 1.47451 * 119.99670 * 11.62430 * 13 4 3 16 16 C 1.39839 * 120.05235 * 317.39144 * 15 13 4 17 17 C 1.36545 * 120.12356 * 179.97438 * 16 15 13 18 18 C 1.39603 * 120.23098 * 0.02562 * 17 16 15 19 19 C 1.48276 * 119.94793 * 180.02562 * 18 17 16 20 20 C 1.39775 * 120.92474 * 359.71587 * 19 18 17 21 21 N 1.32184 * 118.94238 * 179.74408 * 20 19 18 22 22 C 1.31836 * 120.95104 * 0.52222 * 21 20 19 23 23 N 1.31839 * 122.05476 * 359.74985 * 22 21 20 24 24 C 1.32181 * 120.95376 * 359.97438 * 23 22 21 25 25 C 1.39402 * 120.10017 * 0.02562 * 18 17 16 26 26 C 1.38029 * 119.87905 * 359.97438 * 25 18 17 27 27 F 1.35102 * 120.11499 * 180.02562 * 26 25 18 28 28 H 4.40643 * 5.51357 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.46741 * 315.80418 * 3 2 1 30 30 H 1.08998 * 109.46882 * 195.80840 * 3 2 1 31 31 H 0.96992 * 120.00213 * 180.02562 * 8 7 5 32 32 H 1.08003 * 119.93761 * 359.97438 * 16 15 13 33 33 H 1.08003 * 119.89081 * 180.27350 * 17 16 15 34 34 H 1.07998 * 120.52613 * 0.02562 * 20 19 18 35 35 H 1.08002 * 118.97342 * 179.72983 * 22 21 20 36 36 H 1.08000 * 120.52384 * 179.97438 * 24 23 22 37 37 H 1.08004 * 120.05745 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3377 -1.3390 5 6 3.0844 -1.6329 -1.7787 6 1 3.7153 -2.3823 -1.3240 7 6 2.2212 -1.9838 -2.8107 8 7 2.3779 -1.4596 -4.0050 9 14 0.8386 -3.2007 -2.4989 10 1 -0.0610 -2.6683 -1.4441 11 1 0.0666 -3.4042 -3.7510 12 1 1.4109 -4.4966 -2.0535 13 6 3.6333 0.6263 -2.1380 14 8 3.8415 0.3945 -3.3136 15 6 3.9266 1.9621 -1.5867 16 6 3.0264 2.5691 -0.7054 17 6 3.2969 3.8058 -0.1936 18 6 4.4721 4.4712 -0.5472 19 6 4.7597 5.8137 0.0127 20 6 3.8653 6.4325 0.8907 21 7 4.1635 7.6276 1.3704 22 6 5.2792 8.2383 1.0238 23 7 6.1470 7.6928 0.1947 24 6 5.9301 6.4980 -0.3274 25 6 5.3756 3.8753 -1.4259 26 6 5.1065 2.6253 -1.9458 27 9 5.9791 2.0432 -2.7973 28 1 -1.0500 0.0002 -0.0001 29 1 3.0096 -0.7360 0.7164 30 1 3.0088 0.9896 0.2800 31 1 1.7755 -1.7042 -4.7248 32 1 2.1156 2.0587 -0.4290 33 1 2.6011 4.2692 0.4902 34 1 2.9476 5.9400 1.1761 35 1 5.4888 9.2162 1.4316 36 1 6.6455 6.0578 -1.0062 37 1 6.2844 4.3909 -1.6993 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:53 Heat of formation + Delta-G solvation = 82.683100 kcal Electronic energy + Delta-G solvation = -26173.634947 eV Core-core repulsion = 22219.696803 eV Total energy + Delta-G solvation = -3953.938144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.097 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.92278 -42.08568 -40.95829 -39.17829 -36.68990 -35.02832 -34.80156 -34.21456 -33.14085 -31.95531 -30.69879 -28.20841 -27.04786 -25.90712 -25.59396 -23.42834 -23.28055 -21.51068 -19.39386 -19.25057 -18.61631 -18.53923 -18.41704 -17.72302 -17.05305 -16.83502 -16.52842 -16.24762 -16.08962 -15.81738 -15.79653 -15.46953 -14.93958 -14.74083 -14.55023 -14.30314 -14.04094 -13.94497 -13.76126 -13.39583 -13.20473 -13.11080 -12.53132 -12.38477 -12.15680 -11.90040 -11.88031 -11.38426 -11.27628 -10.94214 -10.57359 -10.24930 -10.01722 -9.89979 -9.38872 -9.21427 -8.58082 -5.97740 -0.85340 0.05772 0.10654 0.38265 1.31428 1.42857 1.50775 1.82884 2.01098 2.14846 2.33781 2.53034 2.62685 2.90560 2.97307 3.17213 3.19396 3.24200 3.42176 3.53935 3.59649 3.73736 3.94355 4.04043 4.11768 4.21875 4.41001 4.51718 4.62191 4.72559 4.79718 4.94865 4.96986 5.16872 5.20801 5.22721 5.35843 5.41643 5.67738 5.93357 6.30575 6.82555 7.03788 7.04618 7.09907 7.50948 8.26105 8.39214 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.003389 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.838416 B = 8260.364050 C = 9253.961523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.208 4.208 3 C 0.186 3.814 4 N -0.453 5.453 5 C -0.480 4.480 6 H 0.066 0.934 7 C 0.101 3.899 8 N -0.744 5.744 9 Si 0.890 3.110 10 H -0.253 1.253 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.485 3.515 14 O -0.543 6.543 15 C -0.164 4.164 16 C -0.078 4.078 17 C -0.103 4.103 18 C 0.003 3.997 19 C -0.150 4.150 20 C 0.164 3.836 21 N -0.531 5.531 22 C 0.288 3.712 23 N -0.534 5.534 24 C 0.156 3.844 25 C -0.137 4.137 26 C 0.116 3.884 27 F -0.145 7.145 28 H 0.243 0.757 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.267 0.733 32 H 0.150 0.850 33 H 0.179 0.821 34 H 0.200 0.800 35 H 0.223 0.777 36 H 0.187 0.813 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 17.440 12.709 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.209 4.209 3 C 0.065 3.935 4 N -0.176 5.176 5 C -0.601 4.601 6 H 0.083 0.917 7 C -0.123 4.123 8 N -0.366 5.366 9 Si 0.710 3.290 10 H -0.177 1.177 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.274 3.726 14 O -0.422 6.422 15 C -0.169 4.169 16 C -0.096 4.096 17 C -0.120 4.120 18 C 0.001 3.999 19 C -0.155 4.155 20 C -0.002 4.002 21 N -0.244 5.244 22 C 0.002 3.998 23 N -0.247 5.247 24 C -0.010 4.010 25 C -0.155 4.155 26 C 0.096 3.904 27 F -0.124 7.124 28 H 0.259 0.741 29 H 0.107 0.893 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.196 0.804 34 H 0.216 0.784 35 H 0.240 0.760 36 H 0.203 0.797 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.582 18.273 12.198 21.978 hybrid contribution -0.630 -2.247 -1.133 2.594 sum -0.047 16.026 11.065 19.475 Atomic orbital electron populations 1.25536 0.96601 1.00854 0.99558 1.23988 0.95535 1.00463 1.00909 1.19344 0.83967 1.03267 0.86932 1.43138 1.54977 1.05977 1.13545 1.18115 1.31592 0.84578 1.25794 0.91659 1.26358 0.97618 0.96153 0.92156 1.71194 1.28215 1.36716 1.00508 0.86667 0.82074 0.81392 0.78839 1.17675 1.21452 1.19065 1.19465 0.79983 0.85412 0.87716 1.90804 1.53175 1.81501 1.16684 1.20787 0.97042 0.96878 1.02146 1.21277 0.98780 0.95641 0.93947 1.21236 0.96984 0.93252 1.00540 1.18319 0.94056 0.92184 0.95377 1.20363 0.98451 0.95212 1.01440 1.23900 0.98386 0.89534 0.88350 1.68539 1.20486 1.10127 1.25239 1.25662 0.84659 1.00253 0.89252 1.68515 1.33085 1.11902 1.11223 1.23782 0.94264 0.89162 0.93798 1.21225 1.02517 0.92577 0.99177 1.17849 0.87947 0.92905 0.91687 1.91503 1.67743 1.84671 1.68474 0.74099 0.89291 0.85678 0.92299 0.83231 0.80379 0.78361 0.76042 0.79661 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.65 19.25 74.32 1.43 -5.22 16 2 C -0.21 -7.62 12.08 31.13 0.38 -7.25 16 3 C 0.19 7.07 5.43 84.58 0.46 7.53 16 4 N -0.45 -22.92 2.55 -649.15 -1.66 -24.58 16 5 C -0.48 -27.43 8.45 84.10 0.71 -26.72 16 6 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 7 C 0.10 5.70 5.31 84.95 0.45 6.15 16 8 N -0.74 -44.94 11.44 21.68 0.25 -44.69 16 9 Si 0.89 41.03 29.69 68.60 2.04 43.07 16 10 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.49 25.41 6.99 86.67 0.61 26.01 16 14 O -0.54 -34.25 13.93 -4.11 -0.06 -34.31 16 15 C -0.16 -6.42 5.39 -20.03 -0.11 -6.53 16 16 C -0.08 -2.23 7.29 22.26 0.16 -2.07 16 17 C -0.10 -1.97 9.38 22.20 0.21 -1.77 16 18 C 0.00 0.05 5.88 -20.00 -0.12 -0.07 16 19 C -0.15 -2.42 5.91 -19.86 -0.12 -2.53 16 20 C 0.16 2.32 10.70 85.01 0.91 3.23 16 21 N -0.53 -8.58 10.42 -199.14 -2.08 -10.65 16 22 C 0.29 4.29 12.27 180.86 2.22 6.51 16 23 N -0.53 -9.30 10.42 -199.14 -2.08 -11.38 16 24 C 0.16 2.52 10.70 85.01 0.91 3.42 16 25 C -0.14 -3.31 9.42 22.50 0.21 -3.09 16 26 C 0.12 4.16 7.24 22.66 0.16 4.32 16 27 F -0.15 -6.20 16.31 44.97 0.73 -5.47 16 28 H 0.24 5.59 7.80 -4.42 -0.03 5.56 16 29 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.13 3.88 3.90 -2.39 -0.01 3.87 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.15 4.27 4.74 -2.91 -0.01 4.26 16 33 H 0.18 1.79 6.27 -2.91 -0.02 1.77 16 34 H 0.20 1.55 6.32 -2.91 -0.02 1.54 16 35 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.19 2.25 6.33 -2.91 -0.02 2.24 16 37 H 0.17 2.96 6.28 -2.91 -0.02 2.94 16 Total: -1.00 -81.86 331.99 6.78 -75.08 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.15 Total: 10.99 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 8.47 Total: 1.94 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -5.56 Total: -91.30 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.06 Total: -34.31 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.73 Total: -5.47 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.04 Total: 43.07 kcal Total: -81.86 6.78 -75.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.762 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds