Wall clock time and date at job start Tue Mar 31 2020 14:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47259 * 274.99692 * 3 2 1 5 5 H 1.48501 * 109.47151 * 34.99638 * 3 2 1 6 6 H 1.48499 * 109.47046 * 154.99335 * 3 2 1 7 7 C 1.39125 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 213.75975 * 7 2 1 9 9 N 1.36718 * 120.00063 * 33.76085 * 7 2 1 10 10 C 1.34774 * 119.99652 * 185.70119 * 9 7 2 11 11 O 1.21752 * 120.00397 * 354.54025 * 10 9 7 12 12 C 1.46228 * 119.99393 * 174.54690 * 10 9 7 13 13 C 1.34979 * 120.00091 * 173.70733 * 12 10 9 14 14 C 1.47152 * 119.99662 * 348.43332 * 13 12 10 15 15 C 1.39870 * 120.17200 * 316.32342 * 14 13 12 16 16 C 1.37880 * 119.82209 * 179.74310 * 15 14 13 17 17 C 1.38411 * 120.17349 * 0.56091 * 16 15 14 18 18 C 1.50695 * 119.83090 * 179.71854 * 17 16 15 19 19 F 1.39906 * 109.46887 * 269.98182 * 18 17 16 20 20 F 1.39906 * 109.46681 * 29.97361 * 18 17 16 21 21 F 1.39895 * 109.47768 * 149.97534 * 18 17 16 22 22 C 1.38414 * 120.35016 * 359.69304 * 17 16 15 23 23 C 1.37879 * 120.17461 * 0.02562 * 22 17 16 24 24 C 1.46496 * 119.99649 * 5.97681 * 9 7 2 25 25 C 1.53002 * 117.49840 * 132.59040 * 24 9 7 26 26 C 1.52996 * 60.00061 * 252.50739 * 25 24 9 27 27 H 0.97003 * 119.99800 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00310 * 353.70538 * 12 10 9 29 29 H 1.07998 * 120.00524 * 168.43716 * 13 12 10 30 30 H 1.08001 * 120.09156 * 0.02920 * 15 14 13 31 31 H 1.07998 * 119.91582 * 180.28135 * 16 15 14 32 32 H 1.07998 * 119.91346 * 179.97438 * 22 17 16 33 33 H 1.08006 * 120.09159 * 179.97438 * 23 22 17 34 34 H 1.09000 * 115.54997 * 278.29522 * 24 9 7 35 35 H 1.09004 * 117.49623 * 359.97438 * 25 24 9 36 36 H 1.08995 * 117.50229 * 145.02162 * 25 24 9 37 37 H 1.09000 * 117.50085 * 252.50842 * 26 25 24 38 38 H 1.09000 * 117.52027 * 107.47783 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.3891 2.1074 -1.3947 5 1 1.5015 2.6199 0.8030 6 1 3.5935 1.4120 0.5918 7 6 2.0088 -1.2049 0.0005 8 1 2.9522 -1.2835 0.5203 9 7 1.4981 -2.2893 -0.6570 10 6 2.1117 -3.4855 -0.5616 11 8 3.1733 -3.5801 0.0270 12 6 1.5023 -4.6698 -1.1652 13 6 2.1739 -5.8406 -1.1812 14 6 3.6023 -5.8742 -0.8291 15 6 4.4726 -4.8999 -1.3288 16 6 5.8087 -4.9353 -0.9898 17 6 6.2913 -5.9380 -0.1668 18 6 7.7542 -5.9728 0.1935 19 9 8.4493 -6.7348 -0.7518 20 9 8.2623 -4.6694 0.2066 21 9 7.9090 -6.5465 1.4600 22 6 5.4374 -6.9087 0.3274 23 6 4.0977 -6.8839 0.0024 24 6 0.2875 -2.1497 -1.4700 25 6 0.3065 -2.7547 -2.8751 26 6 0.3608 -1.2364 -2.6953 27 1 -0.4850 0.8401 -0.0004 28 1 0.5148 -4.6079 -1.5981 29 1 1.6631 -6.7526 -1.4526 30 1 4.0984 -4.1194 -1.9746 31 1 6.4812 -4.1811 -1.3711 32 1 5.8217 -7.6882 0.9687 33 1 3.4327 -7.6423 0.3885 34 1 -0.6536 -2.1807 -0.9210 35 1 1.2199 -3.2564 -3.1948 36 1 -0.6222 -3.1841 -3.2508 37 1 -0.5322 -0.6668 -2.9526 38 1 1.3097 -0.7390 -2.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491262681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:56 Heat of formation + Delta-G solvation = -90.762387 kcal Electronic energy + Delta-G solvation = -27433.043063 eV Core-core repulsion = 23020.894572 eV Total energy + Delta-G solvation = -4412.148491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95969 -47.47191 -47.43356 -39.48903 -38.50248 -36.25101 -33.88505 -32.97218 -31.40198 -30.69678 -30.08870 -26.26963 -25.05894 -22.92117 -22.43553 -21.70843 -21.63938 -20.60407 -18.32849 -18.24008 -18.16088 -18.00523 -17.23836 -16.43619 -15.28819 -14.99781 -14.83088 -14.45945 -14.36955 -14.30287 -14.11989 -13.89753 -13.85342 -13.68787 -13.59931 -13.49916 -13.27214 -12.82057 -12.69042 -12.41749 -12.25094 -11.84571 -11.42057 -11.27148 -10.98263 -10.91614 -10.86808 -10.53115 -10.44195 -10.11579 -9.69510 -9.46168 -9.01593 -8.66312 -8.45755 -8.03067 -7.53633 -6.69626 -3.85301 0.98671 1.80364 2.18146 2.90873 3.06485 3.16460 3.22076 3.95245 3.97814 4.03397 4.19617 4.27874 4.46703 4.60384 4.67814 4.98170 5.12548 5.19117 5.23624 5.42178 5.55603 5.67277 5.72275 5.80243 5.90925 5.99510 6.06915 6.14892 6.31190 6.44091 6.46405 6.59633 6.67015 6.68403 6.84058 6.96810 7.05712 7.23201 7.33760 7.93603 8.29349 9.01795 9.23958 9.89886 10.35284 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.003776 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.487474 B = 7413.188644 C = 8579.755117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.051 3.949 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.315 4.315 8 H 0.113 0.887 9 N -0.392 5.392 10 C 0.437 3.563 11 O -0.582 6.582 12 C -0.146 4.146 13 C -0.116 4.116 14 C 0.001 3.999 15 C -0.029 4.029 16 C -0.085 4.085 17 C -0.191 4.191 18 C 0.509 3.491 19 F -0.184 7.184 20 F -0.179 7.179 21 F -0.182 7.182 22 C -0.088 4.088 23 C -0.119 4.119 24 C 0.116 3.884 25 C -0.212 4.212 26 C -0.161 4.161 27 H 0.273 0.727 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -9.771 -5.076 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.159 4.159 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.442 4.442 8 H 0.131 0.869 9 N -0.105 5.105 10 C 0.231 3.769 11 O -0.470 6.470 12 C -0.167 4.167 13 C -0.138 4.138 14 C 0.001 3.999 15 C -0.048 4.048 16 C -0.104 4.104 17 C -0.193 4.193 18 C 0.455 3.545 19 F -0.165 7.165 20 F -0.161 7.161 21 F -0.164 7.164 22 C -0.106 4.106 23 C -0.137 4.137 24 C 0.011 3.989 25 C -0.250 4.250 26 C -0.198 4.198 27 H 0.083 0.917 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.883 -9.589 -4.748 11.383 hybrid contribution 0.247 1.131 0.169 1.170 sum 4.130 -8.458 -4.579 10.467 Atomic orbital electron populations 1.70090 1.06672 1.28536 1.40930 1.25207 0.94836 0.99867 0.95981 0.86238 0.80734 0.81340 0.78624 1.20048 1.20894 1.18916 1.19732 1.05875 0.86802 1.31792 0.86923 1.43363 1.20977 1.07945 1.38254 1.17813 0.88020 0.82918 0.88181 1.90709 1.22754 1.84244 1.49319 1.23460 1.00835 0.94060 0.98392 1.21951 0.92376 0.97204 1.02248 1.19034 0.93180 0.93280 0.94418 1.21042 0.91288 0.94882 0.97556 1.20618 0.96397 0.96430 0.96930 1.19792 0.90481 1.02069 1.06933 1.18451 0.88573 0.73329 0.74173 1.93187 1.81844 1.76330 1.65170 1.93180 1.89097 1.37587 1.96202 1.93154 1.96522 1.84941 1.41750 1.20548 0.93526 0.97514 0.99037 1.21074 0.94459 0.99068 0.99090 1.21305 0.90642 1.02132 0.84869 1.23534 1.02576 0.97367 1.01482 1.22909 1.02543 0.91654 1.02739 0.91680 0.85667 0.85697 0.85833 0.85726 0.85773 0.85673 0.86539 0.89044 0.88842 0.89306 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.00 11.15 55.50 0.62 -19.39 16 2 C 0.05 1.23 4.46 -17.44 -0.08 1.16 16 3 Si 0.91 19.28 29.66 -169.99 -5.04 14.24 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.32 -8.18 9.30 -15.04 -0.14 -8.32 16 8 H 0.11 3.16 7.35 -52.49 -0.39 2.78 16 9 N -0.39 -9.21 2.93 -109.37 -0.32 -9.53 16 10 C 0.44 9.90 6.43 -13.05 -0.08 9.81 16 11 O -0.58 -14.71 11.76 5.14 0.06 -14.65 16 12 C -0.15 -2.59 7.86 -37.53 -0.30 -2.88 16 13 C -0.12 -1.82 9.81 -37.12 -0.36 -2.18 16 14 C 0.00 0.02 4.53 -105.06 -0.48 -0.46 16 15 C -0.03 -0.53 6.62 -39.10 -0.26 -0.79 16 16 C -0.09 -1.47 9.38 -39.65 -0.37 -1.84 16 17 C -0.19 -3.09 5.46 -104.50 -0.57 -3.66 16 18 C 0.51 7.68 3.36 36.00 0.12 7.80 16 19 F -0.18 -2.64 17.30 2.25 0.04 -2.60 16 20 F -0.18 -2.84 16.45 2.25 0.04 -2.80 16 21 F -0.18 -2.70 16.45 2.25 0.04 -2.66 16 22 C -0.09 -1.32 9.38 -39.65 -0.37 -1.70 16 23 C -0.12 -1.81 9.80 -39.10 -0.38 -2.19 16 24 C 0.12 2.33 3.61 -67.93 -0.25 2.09 16 25 C -0.21 -3.37 7.96 -26.73 -0.21 -3.58 16 26 C -0.16 -2.94 9.18 -26.73 -0.25 -3.19 16 27 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 28 H 0.13 1.94 5.81 -52.49 -0.30 1.63 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.12 2.33 7.04 -52.49 -0.37 1.96 16 31 H 0.12 1.98 7.59 -52.49 -0.40 1.58 16 32 H 0.12 1.57 7.59 -52.49 -0.40 1.17 16 33 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.12 2.47 7.76 -51.93 -0.40 2.07 16 35 H 0.09 1.46 7.14 -51.93 -0.37 1.09 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -27.63 333.27 -7.40 -35.03 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.88 Total: 7.27 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.98 Total: -9.93 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.30 Total: -28.92 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.06 Total: -14.65 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.11 Total: -8.07 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.04 Total: 14.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.63 -7.40 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491262681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.729 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds