Wall clock time and date at job start Tue Mar 31 2020 14:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47259 * 274.99692 * 3 2 1 5 5 H 1.48501 * 109.47151 * 34.99638 * 3 2 1 6 6 H 1.48499 * 109.47046 * 154.99335 * 3 2 1 7 7 C 1.39125 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 213.75975 * 7 2 1 9 9 N 1.36718 * 120.00063 * 33.76085 * 7 2 1 10 10 C 1.34774 * 119.99652 * 185.70119 * 9 7 2 11 11 O 1.21752 * 120.00397 * 354.54025 * 10 9 7 12 12 C 1.46228 * 119.99393 * 174.54690 * 10 9 7 13 13 C 1.34979 * 120.00091 * 173.70733 * 12 10 9 14 14 C 1.47152 * 119.99662 * 348.43332 * 13 12 10 15 15 C 1.39870 * 120.17200 * 316.32342 * 14 13 12 16 16 C 1.37880 * 119.82209 * 179.74310 * 15 14 13 17 17 C 1.38411 * 120.17349 * 0.56091 * 16 15 14 18 18 C 1.50695 * 119.83090 * 179.71854 * 17 16 15 19 19 F 1.39906 * 109.46887 * 269.98182 * 18 17 16 20 20 F 1.39906 * 109.46681 * 29.97361 * 18 17 16 21 21 F 1.39895 * 109.47768 * 149.97534 * 18 17 16 22 22 C 1.38414 * 120.35016 * 359.69304 * 17 16 15 23 23 C 1.37879 * 120.17461 * 0.02562 * 22 17 16 24 24 C 1.46496 * 119.99649 * 5.97681 * 9 7 2 25 25 C 1.53002 * 117.49840 * 132.59040 * 24 9 7 26 26 C 1.52996 * 60.00061 * 252.50739 * 25 24 9 27 27 H 0.97003 * 119.99800 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00310 * 353.70538 * 12 10 9 29 29 H 1.07998 * 120.00524 * 168.43716 * 13 12 10 30 30 H 1.08001 * 120.09156 * 0.02920 * 15 14 13 31 31 H 1.07998 * 119.91582 * 180.28135 * 16 15 14 32 32 H 1.07998 * 119.91346 * 179.97438 * 22 17 16 33 33 H 1.08006 * 120.09159 * 179.97438 * 23 22 17 34 34 H 1.09000 * 115.54997 * 278.29522 * 24 9 7 35 35 H 1.09004 * 117.49623 * 359.97438 * 25 24 9 36 36 H 1.08995 * 117.50229 * 145.02162 * 25 24 9 37 37 H 1.09000 * 117.50085 * 252.50842 * 26 25 24 38 38 H 1.09000 * 117.52027 * 107.47783 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.3891 2.1074 -1.3947 5 1 1.5015 2.6199 0.8030 6 1 3.5935 1.4120 0.5918 7 6 2.0088 -1.2049 0.0005 8 1 2.9522 -1.2835 0.5203 9 7 1.4981 -2.2893 -0.6570 10 6 2.1117 -3.4855 -0.5616 11 8 3.1733 -3.5801 0.0270 12 6 1.5023 -4.6698 -1.1652 13 6 2.1739 -5.8406 -1.1812 14 6 3.6023 -5.8742 -0.8291 15 6 4.4726 -4.8999 -1.3288 16 6 5.8087 -4.9353 -0.9898 17 6 6.2913 -5.9380 -0.1668 18 6 7.7542 -5.9728 0.1935 19 9 8.4493 -6.7348 -0.7518 20 9 8.2623 -4.6694 0.2066 21 9 7.9090 -6.5465 1.4600 22 6 5.4374 -6.9087 0.3274 23 6 4.0977 -6.8839 0.0024 24 6 0.2875 -2.1497 -1.4700 25 6 0.3065 -2.7547 -2.8751 26 6 0.3608 -1.2364 -2.6953 27 1 -0.4850 0.8401 -0.0004 28 1 0.5148 -4.6079 -1.5981 29 1 1.6631 -6.7526 -1.4526 30 1 4.0984 -4.1194 -1.9746 31 1 6.4812 -4.1811 -1.3711 32 1 5.8217 -7.6882 0.9687 33 1 3.4327 -7.6423 0.3885 34 1 -0.6536 -2.1807 -0.9210 35 1 1.2199 -3.2564 -3.1948 36 1 -0.6222 -3.1841 -3.2508 37 1 -0.5322 -0.6668 -2.9526 38 1 1.3097 -0.7390 -2.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491262681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:56 Heat of formation + Delta-G solvation = -103.642548 kcal Electronic energy + Delta-G solvation = -27433.601589 eV Core-core repulsion = 23020.894572 eV Total energy + Delta-G solvation = -4412.707017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.18563 -48.70818 -48.64447 -41.00252 -39.90726 -37.84421 -35.40210 -34.54293 -33.12730 -31.97952 -31.44373 -27.80262 -26.57164 -24.34838 -23.75354 -23.21212 -22.97413 -22.05725 -19.70526 -19.51108 -19.42117 -19.31945 -18.92709 -17.94649 -16.99490 -16.44771 -16.19592 -15.97881 -15.77186 -15.58262 -15.42669 -15.29038 -15.12182 -14.93058 -14.91241 -14.81914 -14.72466 -14.22879 -14.14439 -13.97708 -13.54132 -13.42066 -12.99935 -12.90825 -12.35255 -12.29235 -12.23680 -12.19117 -12.14334 -11.67605 -11.16616 -10.84574 -10.62250 -10.21796 -9.94327 -9.65643 -9.02747 -8.49353 -5.76947 -0.32544 0.51274 0.84742 1.34254 1.39436 1.48736 1.66837 2.23484 2.47029 2.71022 2.77071 2.97967 3.04339 3.08229 3.21188 3.44735 3.86722 3.93444 3.99082 4.07360 4.17141 4.29839 4.42901 4.50093 4.57861 4.66565 4.80605 4.86521 5.04626 5.05732 5.14512 5.29407 5.33412 5.34175 5.39696 5.48113 5.52814 5.73604 5.94587 6.10010 6.51482 7.20808 7.52038 8.15992 8.55066 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.003776 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.487474 B = 7413.188644 C = 8579.755117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.358 4.358 8 H 0.072 0.928 9 N -0.412 5.412 10 C 0.437 3.563 11 O -0.619 6.619 12 C -0.172 4.172 13 C -0.073 4.073 14 C -0.026 4.026 15 C -0.046 4.046 16 C -0.103 4.103 17 C -0.198 4.198 18 C 0.514 3.486 19 F -0.178 7.178 20 F -0.186 7.186 21 F -0.178 7.178 22 C -0.087 4.087 23 C -0.112 4.112 24 C 0.092 3.908 25 C -0.167 4.167 26 C -0.168 4.168 27 H 0.277 0.723 28 H 0.153 0.847 29 H 0.178 0.822 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -12.473 -5.951 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.485 4.485 8 H 0.090 0.910 9 N -0.127 5.127 10 C 0.231 3.769 11 O -0.509 6.509 12 C -0.192 4.192 13 C -0.094 4.094 14 C -0.026 4.026 15 C -0.065 4.065 16 C -0.121 4.121 17 C -0.200 4.200 18 C 0.460 3.540 19 F -0.159 7.159 20 F -0.168 7.168 21 F -0.159 7.159 22 C -0.105 4.105 23 C -0.130 4.130 24 C -0.013 4.013 25 C -0.204 4.204 26 C -0.206 4.206 27 H 0.087 0.913 28 H 0.170 0.830 29 H 0.195 0.805 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.180 0.820 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.944 -12.299 -5.639 13.847 hybrid contribution 0.715 1.700 0.459 1.900 sum 3.660 -10.599 -5.181 12.352 Atomic orbital electron populations 1.70110 1.06973 1.29085 1.41562 1.25585 0.95408 1.01152 0.95469 0.85547 0.78942 0.78917 0.78819 1.19191 1.19840 1.20675 1.19355 1.05463 0.89218 1.34497 0.91034 1.43394 1.22373 1.07640 1.39310 1.18748 0.87164 0.84043 0.86911 1.90679 1.24345 1.85252 1.50595 1.23364 1.02325 0.92434 1.01125 1.22554 0.91342 0.98172 0.97284 1.19399 0.94053 0.93726 0.95406 1.21003 0.92130 0.95066 0.98275 1.20720 0.96408 0.97196 0.97771 1.19986 0.91318 1.02062 1.06590 1.18289 0.88144 0.73150 0.74372 1.93199 1.81652 1.76085 1.64964 1.93170 1.89138 1.38223 1.96249 1.93161 1.96476 1.84809 1.41488 1.20968 0.93519 0.97516 0.98539 1.21493 0.95035 0.98798 0.97660 1.21250 0.88804 1.05480 0.85734 1.23602 1.04493 0.95292 0.97026 1.22872 1.01874 0.93525 1.02297 0.91261 0.82970 0.80454 0.87853 0.85777 0.82895 0.82004 0.88043 0.88914 0.84755 0.88117 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.77 11.15 21.69 0.24 -41.53 16 2 C 0.03 1.63 4.46 84.98 0.38 2.01 16 3 Si 0.95 41.17 29.66 68.60 2.03 43.20 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.36 -19.78 9.30 84.14 0.78 -19.00 16 8 H 0.07 4.40 7.35 -2.91 -0.02 4.38 16 9 N -0.41 -20.15 2.93 -618.13 -1.81 -21.96 16 10 C 0.44 20.20 6.43 86.32 0.55 20.75 16 11 O -0.62 -32.50 11.76 -4.51 -0.05 -32.56 16 12 C -0.17 -5.72 7.86 23.60 0.19 -5.54 16 13 C -0.07 -2.01 9.81 23.86 0.23 -1.78 16 14 C -0.03 -0.82 4.53 -20.15 -0.09 -0.91 16 15 C -0.05 -1.69 6.62 22.58 0.15 -1.54 16 16 C -0.10 -3.57 9.38 22.23 0.21 -3.36 16 17 C -0.20 -6.19 5.46 -19.78 -0.11 -6.29 16 18 C 0.51 14.94 3.36 71.23 0.24 15.18 16 19 F -0.18 -4.84 17.30 44.97 0.78 -4.06 16 20 F -0.19 -5.88 16.45 44.97 0.74 -5.14 16 21 F -0.18 -4.95 16.45 44.97 0.74 -4.21 16 22 C -0.09 -2.38 9.38 22.23 0.21 -2.17 16 23 C -0.11 -3.02 9.80 22.58 0.22 -2.79 16 24 C 0.09 3.72 3.61 44.99 0.16 3.88 16 25 C -0.17 -4.93 7.96 30.59 0.24 -4.69 16 26 C -0.17 -6.12 9.18 30.59 0.28 -5.84 16 27 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 28 H 0.15 4.20 5.81 -2.91 -0.02 4.18 16 29 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.10 4.10 7.04 -2.91 -0.02 4.08 16 31 H 0.12 4.15 7.59 -2.91 -0.02 4.12 16 32 H 0.15 3.26 7.59 -2.91 -0.02 3.24 16 33 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.10 4.34 7.76 -2.39 -0.02 4.33 16 35 H 0.09 2.75 7.14 -2.38 -0.02 2.74 16 36 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -64.61 333.27 7.43 -57.18 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.11 Total: 21.16 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 3.65 Total: -12.09 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -1.57 Total: -63.49 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.56 kcal Atomic # 9 Polarization: -15.67 SS G_CDS: 2.26 Total: -13.42 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -64.61 7.43 -57.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491262681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.458 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds