Wall clock time and date at job start Tue Mar 31 2020 14:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 S 1.81406 * 109.46873 * 185.00026 * 4 2 1 6 6 C 1.76207 * 102.99534 * 179.97438 * 5 4 2 7 7 C 1.38968 * 120.08389 * 359.72721 * 6 5 4 8 8 C 1.38087 * 119.92049 * 179.76771 * 7 6 5 9 9 C 1.38298 * 120.07853 * 0.48206 * 8 7 6 10 10 C 1.38309 * 120.16305 * 359.77235 * 9 8 7 11 11 C 1.38086 * 120.07705 * 359.97438 * 10 9 8 12 12 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34773 * 119.99969 * 119.71964 * 12 2 1 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 12 2 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 12 2 17 17 S 1.80989 * 109.47203 * 180.02562 * 16 14 12 18 18 C 1.76206 * 100.00010 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46840 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47269 * 119.99682 * 22 20 18 25 25 H 1.48497 * 109.47235 * 239.99840 * 22 20 18 26 26 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 29 29 H 1.09000 * 109.47278 * 304.99661 * 4 2 1 30 30 H 1.08994 * 109.47510 * 65.00170 * 4 2 1 31 31 H 1.08001 * 120.03842 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.95892 * 180.23370 * 8 7 6 33 33 H 1.08002 * 119.91962 * 179.74708 * 9 8 7 34 34 H 1.07993 * 119.95861 * 179.97438 * 10 9 8 35 35 H 1.08000 * 120.03660 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 37 37 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 38 38 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 39 39 H 1.09004 * 109.46762 * 300.00389 * 16 14 12 40 40 H 1.08998 * 109.46924 * 59.99727 * 16 14 12 41 41 H 0.97004 * 119.99966 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8479 -0.5931 1.3255 6 6 4.2449 -1.4658 2.8040 7 6 3.2340 -2.0305 3.5723 8 6 3.5493 -2.7178 4.7278 9 6 4.8685 -2.8359 5.1259 10 6 5.8768 -2.2707 4.3665 11 6 5.5694 -1.5865 3.2071 12 7 2.0184 -0.6907 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7885 -0.0340 -2.0862 15 8 3.0777 1.1284 -1.8966 16 6 3.2905 -0.7443 -3.3169 17 16 4.2899 0.3954 -4.3058 18 6 4.7324 -0.6655 -5.6413 19 1 4.3853 -1.6881 -5.6564 20 6 5.5279 -0.1873 -6.6732 21 7 5.9513 1.0589 -6.6546 22 14 5.9977 -1.3122 -8.0887 23 1 5.3983 -2.6539 -7.8746 24 1 5.4914 -0.7422 -9.3631 25 1 7.4761 -1.4346 -8.1541 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7714 1.2056 31 1 2.2033 -1.9348 3.2644 32 1 2.7645 -3.1601 5.3234 33 1 5.1118 -3.3705 6.0322 34 1 6.9058 -2.3646 4.6807 35 1 6.3573 -1.1450 2.6149 36 1 0.7375 -2.1445 -1.9992 37 1 2.4629 -2.5819 -1.9862 38 1 1.5295 -2.5969 -0.4707 39 1 3.8999 -1.5981 -3.0205 40 1 2.4425 -1.0909 -3.9076 41 1 6.5070 1.3932 -7.3760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593218818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:38 Heat of formation + Delta-G solvation = -9.962398 kcal Electronic energy + Delta-G solvation = -22075.676791 eV Core-core repulsion = 18787.085613 eV Total energy + Delta-G solvation = -3288.591178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.67379 -39.10961 -36.30328 -32.78461 -32.40399 -31.33487 -31.15410 -28.74477 -27.73113 -26.84319 -25.46413 -23.06947 -22.82980 -21.65483 -19.12427 -17.94044 -17.70809 -16.92182 -16.54475 -15.82344 -15.58951 -15.24751 -14.92244 -14.78474 -14.31727 -14.10349 -13.85453 -13.63236 -13.46446 -13.27081 -13.12474 -12.84196 -12.59625 -12.38295 -12.29491 -12.07965 -11.82860 -11.50197 -11.33335 -11.13896 -11.05429 -10.98907 -10.73421 -10.17829 -9.95507 -9.76949 -9.32857 -9.23833 -9.04998 -8.59307 -8.18778 -7.47646 -6.46641 -6.19259 -3.89241 0.98601 1.11927 1.35765 2.31353 2.90511 3.08169 3.23099 3.27231 3.32538 3.47539 3.61882 4.22499 4.37212 4.58347 4.67083 4.69618 4.83537 4.89229 5.00254 5.06095 5.13043 5.15835 5.16193 5.27124 5.28596 5.42042 5.47238 5.49095 5.58891 5.71491 5.72830 5.86210 5.94887 5.95804 6.04439 6.12723 6.17319 6.24920 6.61698 6.65526 7.52101 7.62346 8.37876 8.57492 9.26180 10.88212 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002875 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.098828 B = 9736.503478 C =10764.762770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.112 0.888 4 C -0.126 4.126 5 S -0.078 6.078 6 C -0.086 4.086 7 C -0.139 4.139 8 C -0.102 4.102 9 C -0.132 4.132 10 C -0.100 4.100 11 C -0.102 4.102 12 N -0.618 5.618 13 C 0.080 3.920 14 C 0.538 3.462 15 O -0.512 6.512 16 C -0.149 4.149 17 S -0.061 6.061 18 C -0.533 4.533 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.422 -9.209 22.454 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.130 0.870 4 C -0.275 4.275 5 S 0.169 5.831 6 C -0.199 4.199 7 C -0.163 4.163 8 C -0.121 4.121 9 C -0.153 4.153 10 C -0.120 4.120 11 C -0.126 4.126 12 N -0.355 5.355 13 C -0.063 4.063 14 C 0.326 3.674 15 O -0.386 6.386 16 C -0.299 4.299 17 S 0.165 5.835 18 C -0.681 4.681 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.220 -6.726 21.735 24.191 hybrid contribution -0.883 -2.913 -0.139 3.047 sum -9.103 -9.639 21.595 25.341 Atomic orbital electron populations 1.22097 0.93664 1.02539 1.03046 1.20681 0.94220 0.98344 0.82068 0.86963 1.24244 0.95650 1.05077 1.02530 1.86477 1.05775 1.66528 1.24342 1.22055 0.96803 1.01779 0.99278 1.21157 0.98156 1.00629 0.96367 1.21036 0.96663 0.98326 0.96114 1.21153 0.92942 1.00991 1.00247 1.21113 0.99497 0.96998 0.94401 1.20839 0.94536 1.00005 0.97217 1.47875 1.52662 1.12447 1.22486 1.21719 1.01285 0.81740 1.01562 1.20327 0.76797 0.86810 0.83499 1.90692 1.55833 1.16465 1.75595 1.23543 1.04241 1.04702 0.97421 1.85401 1.61512 1.15084 1.21456 1.22894 1.37390 0.99622 1.08213 0.90940 1.24988 0.95133 0.95529 0.97958 1.70031 1.33410 1.14275 1.32571 0.86128 0.78324 0.80130 0.80978 1.19626 1.20601 1.20576 0.91217 0.92145 0.91361 0.88521 0.89145 0.86099 0.85959 0.85993 0.85575 0.85350 0.92677 0.90418 0.91704 0.89173 0.89368 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 2 C 0.15 1.77 2.64 -67.93 -0.18 1.59 16 3 H 0.11 1.61 6.90 -51.93 -0.36 1.26 16 4 C -0.13 -1.23 3.74 37.16 0.14 -1.09 16 5 S -0.08 -1.03 21.66 -107.50 -2.33 -3.36 16 6 C -0.09 -1.01 6.11 -39.04 -0.24 -1.25 16 7 C -0.14 -1.36 9.36 -39.37 -0.37 -1.72 16 8 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 9 C -0.13 -1.10 10.04 -39.53 -0.40 -1.50 16 10 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 11 C -0.10 -1.14 9.79 -39.36 -0.39 -1.53 16 12 N -0.62 -8.53 2.47 -173.93 -0.43 -8.96 16 13 C 0.08 0.84 9.29 59.85 0.56 1.39 16 14 C 0.54 10.21 7.69 -10.98 -0.08 10.13 16 15 O -0.51 -11.65 15.19 5.56 0.08 -11.57 16 16 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.77 7.73 -51.92 -0.40 0.37 16 30 H 0.09 0.76 6.10 -51.93 -0.32 0.44 16 31 H 0.12 0.97 5.88 -52.49 -0.31 0.67 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.86 6.45 -51.93 -0.33 0.52 16 38 H 0.06 0.53 6.34 -51.93 -0.33 0.20 16 39 H 0.09 1.75 7.41 -51.91 -0.38 1.36 16 40 H 0.09 1.68 8.10 -51.92 -0.42 1.26 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -34.88 367.00 -10.45 -45.32 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.76 Total: -0.57 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.04 Total: -13.41 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.30 Total: -34.57 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -4.54 Total: -7.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.88 -10.45 -45.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593218818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.361 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds