Wall clock time and date at job start Tue Mar 31 2020 14:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 S 1.81406 * 109.46873 * 185.00026 * 4 2 1 6 6 C 1.76207 * 102.99534 * 179.97438 * 5 4 2 7 7 C 1.38968 * 120.08389 * 359.72721 * 6 5 4 8 8 C 1.38087 * 119.92049 * 179.76771 * 7 6 5 9 9 C 1.38298 * 120.07853 * 0.48206 * 8 7 6 10 10 C 1.38309 * 120.16305 * 359.77235 * 9 8 7 11 11 C 1.38086 * 120.07705 * 359.97438 * 10 9 8 12 12 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34773 * 119.99969 * 119.71964 * 12 2 1 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 12 2 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 12 2 17 17 S 1.80989 * 109.47203 * 180.02562 * 16 14 12 18 18 C 1.76206 * 100.00010 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46840 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47269 * 119.99682 * 22 20 18 25 25 H 1.48497 * 109.47235 * 239.99840 * 22 20 18 26 26 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 27 27 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 29 29 H 1.09000 * 109.47278 * 304.99661 * 4 2 1 30 30 H 1.08994 * 109.47510 * 65.00170 * 4 2 1 31 31 H 1.08001 * 120.03842 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.95892 * 180.23370 * 8 7 6 33 33 H 1.08002 * 119.91962 * 179.74708 * 9 8 7 34 34 H 1.07993 * 119.95861 * 179.97438 * 10 9 8 35 35 H 1.08000 * 120.03660 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 37 37 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 38 38 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 39 39 H 1.09004 * 109.46762 * 300.00389 * 16 14 12 40 40 H 1.08998 * 109.46924 * 59.99727 * 16 14 12 41 41 H 0.97004 * 119.99966 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8479 -0.5931 1.3255 6 6 4.2449 -1.4658 2.8040 7 6 3.2340 -2.0305 3.5723 8 6 3.5493 -2.7178 4.7278 9 6 4.8685 -2.8359 5.1259 10 6 5.8768 -2.2707 4.3665 11 6 5.5694 -1.5865 3.2071 12 7 2.0184 -0.6907 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7885 -0.0340 -2.0862 15 8 3.0777 1.1284 -1.8966 16 6 3.2905 -0.7443 -3.3169 17 16 4.2899 0.3954 -4.3058 18 6 4.7324 -0.6655 -5.6413 19 1 4.3853 -1.6881 -5.6564 20 6 5.5279 -0.1873 -6.6732 21 7 5.9513 1.0589 -6.6546 22 14 5.9977 -1.3122 -8.0887 23 1 5.3983 -2.6539 -7.8746 24 1 5.4914 -0.7422 -9.3631 25 1 7.4761 -1.4346 -8.1541 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7714 1.2056 31 1 2.2033 -1.9348 3.2644 32 1 2.7645 -3.1601 5.3234 33 1 5.1118 -3.3705 6.0322 34 1 6.9058 -2.3646 4.6807 35 1 6.3573 -1.1450 2.6149 36 1 0.7375 -2.1445 -1.9992 37 1 2.4629 -2.5819 -1.9862 38 1 1.5295 -2.5969 -0.4707 39 1 3.8999 -1.5981 -3.0205 40 1 2.4425 -1.0909 -3.9076 41 1 6.5070 1.3932 -7.3760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593218818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:38 Heat of formation + Delta-G solvation = -30.175487 kcal Electronic energy + Delta-G solvation = -22076.553296 eV Core-core repulsion = 18787.085613 eV Total energy + Delta-G solvation = -3289.467683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99056 -39.81284 -37.54630 -34.58926 -33.88949 -32.06650 -31.85827 -30.27221 -28.47601 -27.82770 -27.66186 -23.84993 -23.54409 -22.72106 -20.39921 -19.59752 -18.73387 -18.32184 -17.37416 -16.98215 -16.87925 -16.82834 -16.09369 -16.04961 -15.68500 -15.07963 -14.85397 -14.68536 -14.49489 -14.36578 -14.14452 -14.10786 -13.66028 -13.44733 -13.30360 -13.15638 -13.07278 -12.92173 -12.83935 -12.57754 -12.24417 -12.11841 -11.91785 -11.69961 -11.16112 -11.04262 -10.86219 -10.70419 -10.26359 -9.94965 -9.73493 -8.67260 -8.42645 -8.34860 -6.13025 0.26029 0.40653 0.50032 1.25370 1.40955 1.44836 1.48351 1.57100 1.61162 2.09399 2.27161 2.76864 2.99177 3.26388 3.50180 3.80362 3.91245 3.92889 4.00681 4.12601 4.17626 4.23384 4.26143 4.38859 4.44673 4.49992 4.54292 4.57006 4.69178 4.76904 4.79043 4.90572 5.01999 5.05854 5.24587 5.32369 5.41341 5.45023 5.55879 5.57485 5.98740 6.19569 6.25989 7.06222 7.16413 8.74739 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002875 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.098828 B = 9736.503478 C =10764.762770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.100 4.100 5 S -0.168 6.168 6 C -0.094 4.094 7 C -0.142 4.142 8 C -0.102 4.102 9 C -0.130 4.130 10 C -0.106 4.106 11 C -0.128 4.128 12 N -0.603 5.603 13 C 0.070 3.930 14 C 0.535 3.465 15 O -0.562 6.562 16 C -0.122 4.122 17 S -0.153 6.153 18 C -0.543 4.543 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 -12.667 24.253 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 H 0.095 0.905 4 C -0.249 4.249 5 S 0.077 5.923 6 C -0.207 4.207 7 C -0.166 4.166 8 C -0.121 4.121 9 C -0.151 4.151 10 C -0.126 4.126 11 C -0.152 4.152 12 N -0.338 5.338 13 C -0.072 4.072 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.273 4.273 17 S 0.074 5.926 18 C -0.691 4.691 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.200 1.200 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.424 -10.233 23.583 27.740 hybrid contribution -0.267 -1.894 -0.501 1.978 sum -10.692 -12.127 23.081 28.180 Atomic orbital electron populations 1.22054 0.90536 1.04322 1.03495 1.20866 0.96331 0.96658 0.81796 0.90485 1.24193 0.92076 1.06369 1.02220 1.86828 1.10229 1.68192 1.27050 1.21964 0.97490 1.02676 0.98600 1.21443 0.98532 1.00164 0.96468 1.21453 0.97606 0.97408 0.95648 1.21567 0.92720 1.00047 1.00742 1.21383 1.01021 0.96485 0.93674 1.20959 0.94493 1.01351 0.98386 1.47837 1.50545 1.13635 1.21734 1.22042 1.01921 0.79463 1.03751 1.20059 0.77542 0.86242 0.83885 1.90674 1.58145 1.18528 1.76714 1.23352 1.03599 1.02929 0.97382 1.85590 1.63931 1.19405 1.23689 1.23207 1.37655 0.99838 1.08386 0.90025 1.26147 0.94779 0.97217 1.01096 1.70198 1.34278 1.16567 1.33801 0.84894 0.78073 0.78198 0.76700 1.17961 1.19814 1.19961 0.92756 0.89578 0.89035 0.86107 0.86731 0.84204 0.82867 0.83118 0.83799 0.86815 0.90498 0.91106 0.88526 0.87964 0.87519 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 71.98 0.66 -1.41 16 2 C 0.15 3.28 2.64 44.99 0.12 3.40 16 3 H 0.08 2.31 6.90 -2.39 -0.02 2.29 16 4 C -0.10 -1.75 3.74 71.98 0.27 -1.48 16 5 S -0.17 -4.59 21.66 -56.49 -1.22 -5.82 16 6 C -0.09 -2.18 6.11 22.62 0.14 -2.04 16 7 C -0.14 -2.41 9.36 22.41 0.21 -2.20 16 8 C -0.10 -1.36 10.04 22.25 0.22 -1.14 16 9 C -0.13 -1.78 10.04 22.30 0.22 -1.55 16 10 C -0.11 -1.82 10.04 22.25 0.22 -1.60 16 11 C -0.13 -2.94 9.79 22.41 0.22 -2.72 16 12 N -0.60 -16.11 2.47 -822.59 -2.03 -18.14 16 13 C 0.07 1.26 9.29 127.77 1.19 2.45 16 14 C 0.54 20.90 7.69 87.66 0.67 21.57 16 15 O -0.56 -27.22 15.19 -3.03 -0.05 -27.26 16 16 C -0.12 -5.09 4.71 71.24 0.34 -4.75 16 17 S -0.15 -8.81 20.57 -56.49 -1.16 -9.98 16 18 C -0.54 -31.70 9.50 67.95 0.65 -31.05 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -57.08 13.22 21.65 0.29 -56.79 16 22 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 0.83 7.67 -2.39 -0.02 0.81 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 1.56 7.73 -2.39 -0.02 1.55 16 30 H 0.11 1.46 6.10 -2.39 -0.01 1.44 16 31 H 0.14 1.72 5.88 -2.91 -0.02 1.70 16 32 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.41 6.45 -2.39 -0.02 1.39 16 38 H 0.10 1.16 6.34 -2.38 -0.02 1.14 16 39 H 0.10 3.99 7.41 -2.39 -0.02 3.98 16 40 H 0.11 4.02 8.10 -2.40 -0.02 4.00 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -82.07 367.00 4.47 -77.60 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.02 Total: 15.40 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 5.60 Total: -21.37 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.74 Total: -74.94 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -13.41 SS G_CDS: -2.39 Total: -15.79 kcal Total: -82.07 4.47 -77.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593218818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.427 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds