Wall clock time and date at job start Tue Mar 31 2020 14:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47136 * 239.99609 * 3 2 1 5 5 H 1.48495 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47247 * 119.99931 * 3 2 1 7 7 C 1.37874 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46798 * 179.97438 * 10 9 7 12 12 N 1.46510 * 109.46819 * 179.97438 * 11 10 9 13 13 S 1.65595 * 119.99726 * 165.00349 * 12 11 10 14 14 O 1.42100 * 106.40418 * 311.45688 * 13 12 11 15 15 O 1.42109 * 106.40063 * 178.53961 * 13 12 11 16 16 C 1.76195 * 107.22162 * 65.00256 * 13 12 11 17 17 C 1.38010 * 119.89525 * 115.01094 * 16 13 12 18 18 C 1.38253 * 119.96142 * 180.02562 * 17 16 13 19 19 C 1.38155 * 119.97852 * 0.08751 * 18 17 16 20 20 C 1.38461 * 120.31611 * 359.91483 * 19 18 17 21 21 C 1.38407 * 119.83546 * 359.95812 * 20 19 18 22 22 O 1.35841 * 121.80141 * 180.31070 * 21 20 19 23 23 C 1.42828 * 117.85694 * 342.79315 * 22 21 20 24 24 C 1.53403 * 108.38113 * 49.18582 * 23 22 21 25 25 C 1.50774 * 118.76287 * 179.80731 * 20 19 18 26 26 H 0.97007 * 119.99808 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47415 * 60.00117 * 9 7 2 28 28 H 1.09004 * 109.47466 * 299.99874 * 9 7 2 29 29 H 1.08997 * 109.46863 * 60.00432 * 10 9 7 30 30 H 1.08996 * 109.47276 * 300.00121 * 10 9 7 31 31 H 1.08995 * 109.47256 * 60.00508 * 11 10 9 32 32 H 1.08992 * 109.47637 * 299.99755 * 11 10 9 33 33 H 0.96997 * 119.99428 * 345.00197 * 12 11 10 34 34 H 1.08001 * 120.02381 * 0.02771 * 17 16 13 35 35 H 1.07991 * 120.01172 * 180.36295 * 18 17 16 36 36 H 1.08002 * 119.83755 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.68323 * 289.46221 * 23 22 21 38 38 H 1.09003 * 109.71229 * 168.92895 * 23 22 21 39 39 H 1.08998 * 109.69984 * 175.56952 * 24 23 22 40 40 H 1.08999 * 109.72839 * 54.99128 * 24 23 22 41 41 H 1.08994 * 109.43529 * 282.41403 * 25 20 19 42 42 H 1.09004 * 109.43081 * 42.32656 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 7 2.4322 -6.1007 0.0006 13 16 1.9175 -7.6301 0.3721 14 8 1.1553 -7.5180 1.5662 15 8 3.0530 -8.4760 0.2514 16 6 0.7930 -8.1235 -0.8915 17 6 1.1127 -9.1769 -1.7238 18 6 0.2317 -9.5649 -2.7161 19 6 -0.9670 -8.8967 -2.8748 20 6 -1.2931 -7.8390 -2.0428 21 6 -0.4143 -7.4501 -1.0468 22 8 -0.6964 -6.4224 -0.2045 23 6 -1.7288 -5.5117 -0.5849 24 6 -2.9624 -6.3244 -0.9986 25 6 -2.6085 -7.1318 -2.2500 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 0.8532 -5.0451 -0.8886 32 1 0.8538 -5.0446 0.8913 33 1 3.3639 -5.9419 -0.2175 34 1 2.0506 -9.6980 -1.6001 35 1 0.4784 -10.3928 -3.3640 36 1 -1.6534 -9.2014 -3.6510 37 1 -1.3912 -4.9039 -1.4244 38 1 -1.9794 -4.8672 0.2576 39 1 -3.7899 -5.6500 -1.2184 40 1 -3.2444 -7.0014 -0.1922 41 1 -2.5284 -6.4600 -3.1045 42 1 -3.3901 -7.8678 -2.4391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593543781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:45 Heat of formation + Delta-G solvation = -105.359142 kcal Electronic energy + Delta-G solvation = -26277.730102 eV Core-core repulsion = 22542.249340 eV Total energy + Delta-G solvation = -3735.480762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95608 -37.86855 -36.91165 -35.86589 -35.61254 -34.60491 -33.21086 -30.94467 -30.77745 -30.65634 -26.34867 -25.92189 -23.99865 -23.44108 -22.93112 -20.72216 -20.12540 -19.08460 -18.25033 -17.59574 -16.90743 -16.64351 -16.38126 -15.92525 -15.45012 -15.04230 -14.58330 -14.50462 -14.34868 -14.21011 -14.11340 -13.92534 -13.42263 -12.83897 -12.52880 -12.41314 -12.28597 -12.06253 -11.87685 -11.83386 -11.73693 -11.48258 -11.31608 -11.14953 -10.94947 -10.91686 -10.67117 -10.56476 -10.44752 -9.89769 -9.46920 -9.37964 -9.18275 -9.03972 -8.45860 -8.37958 -6.04100 -4.05823 0.52226 0.76907 1.13305 2.99898 3.14836 3.31561 3.35958 3.38345 3.40381 3.87165 4.27324 4.40322 4.43578 4.50727 4.64987 4.77535 4.85996 4.97121 5.11070 5.22235 5.32449 5.37784 5.49033 5.51271 5.53433 5.58169 5.70430 5.77930 5.84923 5.88723 5.99805 6.05137 6.13916 6.22771 6.47881 6.63691 6.84764 6.99405 7.10162 7.28684 7.61325 7.75478 7.95284 8.38252 9.00178 9.58338 11.07208 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.003859 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.734612 B = 7254.085210 C = 8482.722906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.119 4.119 11 C 0.122 3.878 12 N -1.112 6.112 13 S 2.702 3.298 14 O -0.947 6.947 15 O -0.974 6.974 16 C -0.706 4.706 17 C 0.006 3.994 18 C -0.177 4.177 19 C -0.034 4.034 20 C -0.181 4.181 21 C 0.232 3.768 22 O -0.302 6.302 23 C 0.055 3.945 24 C -0.161 4.161 25 C -0.078 4.078 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.415 0.585 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 -18.148 -6.728 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.003 4.003 12 N -0.873 5.873 13 S 2.791 3.209 14 O -0.937 6.937 15 O -0.964 6.964 16 C -0.793 4.793 17 C -0.013 4.013 18 C -0.196 4.196 19 C -0.052 4.052 20 C -0.182 4.182 21 C 0.184 3.816 22 O -0.215 6.215 23 C -0.019 4.019 24 C -0.199 4.199 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.250 0.750 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.960 -18.490 -5.776 19.996 hybrid contribution 0.178 1.105 -1.087 1.560 sum -4.782 -17.385 -6.863 19.293 Atomic orbital electron populations 1.69938 1.06018 1.26714 1.50835 1.24994 0.94857 0.99200 0.95268 0.86660 0.79597 0.83107 0.78640 1.20301 1.21314 1.20210 1.21198 0.93058 0.90984 1.50683 0.92699 1.19041 0.93922 0.90978 0.97381 1.21910 0.99685 0.93121 1.01139 1.21670 0.90802 0.86037 1.01773 1.55450 1.19216 1.24278 1.88320 1.01585 0.73108 0.72267 0.73981 1.93597 1.72259 1.85690 1.42183 1.93545 1.49670 1.65975 1.87250 1.30411 1.12196 1.11487 1.25170 1.20787 0.98626 0.91516 0.90404 1.21111 0.95365 1.02454 1.00629 1.21182 0.95880 0.92299 0.95858 1.19918 0.97864 1.00923 0.99523 1.18055 0.90266 0.85919 0.87375 1.86221 1.55037 1.36093 1.44103 1.23234 0.85271 0.89950 1.03490 1.22264 0.98922 1.00188 0.98497 1.20507 0.93276 0.98950 0.98721 0.92967 0.96556 0.96176 0.92435 0.92808 0.92649 0.90044 0.75032 0.83548 0.85032 0.85229 0.90331 0.85893 0.89071 0.90209 0.90019 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.34 5.30 -26.73 -0.14 -2.48 16 11 C 0.12 2.07 4.46 -4.04 -0.02 2.05 16 12 N -1.11 -16.56 6.00 -10.61 -0.06 -16.63 16 13 S 2.70 41.86 5.45 -107.50 -0.59 41.28 16 14 O -0.95 -17.62 16.67 -63.28 -1.06 -18.68 16 15 O -0.97 -15.95 16.96 -57.17 -0.97 -16.92 16 16 C -0.71 -9.92 5.90 -39.34 -0.23 -10.16 16 17 C 0.01 0.07 9.54 -39.66 -0.38 -0.31 16 18 C -0.18 -1.74 10.05 -39.61 -0.40 -2.14 16 19 C -0.03 -0.33 9.67 -39.53 -0.38 -0.71 16 20 C -0.18 -2.07 5.75 -104.44 -0.60 -2.67 16 21 C 0.23 3.24 6.13 -39.19 -0.24 3.00 16 22 O -0.30 -4.42 5.31 -31.79 -0.17 -4.59 16 23 C 0.05 0.66 6.52 37.37 0.24 0.90 16 24 C -0.16 -1.50 6.19 -26.49 -0.16 -1.67 16 25 C -0.08 -0.69 5.86 -27.81 -0.16 -0.85 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.89 6.12 -51.93 -0.32 0.57 16 32 H 0.08 1.45 7.08 -51.93 -0.37 1.08 16 33 H 0.42 5.36 8.65 -34.47 -0.30 5.06 16 34 H 0.15 1.52 7.32 -52.49 -0.38 1.14 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.08 0.94 7.99 -51.93 -0.41 0.52 16 38 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.03 15.07 5.30 5.30 Total: -1.00 -34.02 352.03 -10.82 -44.84 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.97 Total: 1.99 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -3.02 Total: -27.64 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.67 Total: -41.77 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -2.19 Total: -40.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 41.86 SS G_CDS: -0.59 Total: 41.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.02 -10.82 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593543781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.521 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds