Wall clock time and date at job start Tue Mar 31 2020 14:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47136 * 239.99609 * 3 2 1 5 5 H 1.48495 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47247 * 119.99931 * 3 2 1 7 7 C 1.37874 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47027 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46798 * 179.97438 * 10 9 7 12 12 N 1.46510 * 109.46819 * 179.97438 * 11 10 9 13 13 S 1.65595 * 119.99726 * 165.00349 * 12 11 10 14 14 O 1.42100 * 106.40418 * 311.45688 * 13 12 11 15 15 O 1.42109 * 106.40063 * 178.53961 * 13 12 11 16 16 C 1.76195 * 107.22162 * 65.00256 * 13 12 11 17 17 C 1.38010 * 119.89525 * 115.01094 * 16 13 12 18 18 C 1.38253 * 119.96142 * 180.02562 * 17 16 13 19 19 C 1.38155 * 119.97852 * 0.08751 * 18 17 16 20 20 C 1.38461 * 120.31611 * 359.91483 * 19 18 17 21 21 C 1.38407 * 119.83546 * 359.95812 * 20 19 18 22 22 O 1.35841 * 121.80141 * 180.31070 * 21 20 19 23 23 C 1.42828 * 117.85694 * 342.79315 * 22 21 20 24 24 C 1.53403 * 108.38113 * 49.18582 * 23 22 21 25 25 C 1.50774 * 118.76287 * 179.80731 * 20 19 18 26 26 H 0.97007 * 119.99808 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47415 * 60.00117 * 9 7 2 28 28 H 1.09004 * 109.47466 * 299.99874 * 9 7 2 29 29 H 1.08997 * 109.46863 * 60.00432 * 10 9 7 30 30 H 1.08996 * 109.47276 * 300.00121 * 10 9 7 31 31 H 1.08995 * 109.47256 * 60.00508 * 11 10 9 32 32 H 1.08992 * 109.47637 * 299.99755 * 11 10 9 33 33 H 0.96997 * 119.99428 * 345.00197 * 12 11 10 34 34 H 1.08001 * 120.02381 * 0.02771 * 17 16 13 35 35 H 1.07991 * 120.01172 * 180.36295 * 18 17 16 36 36 H 1.08002 * 119.83755 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.68323 * 289.46221 * 23 22 21 38 38 H 1.09003 * 109.71229 * 168.92895 * 23 22 21 39 39 H 1.08998 * 109.69984 * 175.56952 * 24 23 22 40 40 H 1.08999 * 109.72839 * 54.99128 * 24 23 22 41 41 H 1.08994 * 109.43529 * 282.41403 * 25 20 19 42 42 H 1.09004 * 109.43081 * 42.32656 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 0.0012 12 7 2.4322 -6.1007 0.0006 13 16 1.9175 -7.6301 0.3721 14 8 1.1553 -7.5180 1.5662 15 8 3.0530 -8.4760 0.2514 16 6 0.7930 -8.1235 -0.8915 17 6 1.1127 -9.1769 -1.7238 18 6 0.2317 -9.5649 -2.7161 19 6 -0.9670 -8.8967 -2.8748 20 6 -1.2931 -7.8390 -2.0428 21 6 -0.4143 -7.4501 -1.0468 22 8 -0.6964 -6.4224 -0.2045 23 6 -1.7288 -5.5117 -0.5849 24 6 -2.9624 -6.3244 -0.9986 25 6 -2.6085 -7.1318 -2.2500 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 0.8532 -5.0451 -0.8886 32 1 0.8538 -5.0446 0.8913 33 1 3.3639 -5.9419 -0.2175 34 1 2.0506 -9.6980 -1.6001 35 1 0.4784 -10.3928 -3.3640 36 1 -1.6534 -9.2014 -3.6510 37 1 -1.3912 -4.9039 -1.4244 38 1 -1.9794 -4.8672 0.2576 39 1 -3.7899 -5.6500 -1.2184 40 1 -3.2444 -7.0014 -0.1922 41 1 -2.5284 -6.4600 -3.1045 42 1 -3.3901 -7.8678 -2.4391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593543781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:45 Heat of formation + Delta-G solvation = -128.172473 kcal Electronic energy + Delta-G solvation = -26278.719362 eV Core-core repulsion = 22542.249340 eV Total energy + Delta-G solvation = -3736.470022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84852 -38.81655 -38.16005 -37.35525 -36.94818 -35.43383 -35.12651 -32.63360 -31.71789 -31.54020 -28.19193 -26.74957 -24.90356 -24.71963 -24.31012 -22.28034 -21.10840 -20.27634 -19.27206 -18.64562 -18.53732 -18.02943 -17.58834 -17.07152 -16.59791 -16.45545 -15.98280 -15.91843 -15.54915 -15.14938 -15.01170 -14.84505 -14.29510 -14.25956 -14.00451 -13.72393 -13.58149 -13.37353 -13.22648 -13.16657 -13.09443 -12.75902 -12.66889 -12.47550 -12.32019 -12.20902 -11.94484 -11.79257 -11.69679 -11.39631 -11.36005 -11.13511 -10.50885 -10.43679 -10.22799 -9.33955 -8.16790 -6.26242 -0.60710 -0.20758 0.27417 1.42874 1.44782 1.52423 1.97202 2.13198 2.43430 2.44986 2.70359 3.17044 3.29465 3.64403 3.70641 3.76299 3.94570 4.10320 4.11352 4.20617 4.28010 4.30042 4.39080 4.52024 4.59092 4.64404 4.72137 4.75055 4.89525 4.95618 5.00149 5.06442 5.12978 5.20691 5.23441 5.26302 5.34362 5.55763 5.68939 5.77711 5.88073 6.09652 6.19487 6.28708 6.88946 7.42182 8.94469 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.003859 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.734612 B = 7254.085210 C = 8482.722906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.109 4.109 11 C 0.137 3.863 12 N -1.108 6.108 13 S 2.715 3.285 14 O -0.986 6.986 15 O -0.986 6.986 16 C -0.721 4.721 17 C -0.009 4.009 18 C -0.169 4.169 19 C -0.027 4.027 20 C -0.189 4.189 21 C 0.203 3.797 22 O -0.327 6.327 23 C 0.044 3.956 24 C -0.155 4.155 25 C -0.076 4.076 26 H 0.263 0.737 27 H 0.002 0.998 28 H -0.004 1.004 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.425 0.575 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 -19.098 -8.911 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.148 4.148 11 C 0.011 3.989 12 N -0.870 5.870 13 S 2.807 3.193 14 O -0.976 6.976 15 O -0.976 6.976 16 C -0.811 4.811 17 C -0.028 4.028 18 C -0.188 4.188 19 C -0.045 4.045 20 C -0.191 4.191 21 C 0.155 3.845 22 O -0.240 6.240 23 C -0.029 4.029 24 C -0.193 4.193 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.021 0.979 28 H 0.014 0.986 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.261 0.739 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.154 -19.437 -7.935 21.618 hybrid contribution 0.212 1.326 -0.465 1.421 sum -4.942 -18.111 -8.400 20.567 Atomic orbital electron populations 1.70060 1.07502 1.27694 1.51542 1.25863 0.95751 1.02912 0.94816 0.85596 0.78370 0.78618 0.79018 1.19273 1.20870 1.19590 1.21650 0.93550 0.92388 1.50643 0.92337 1.18918 0.94285 0.92215 0.95502 1.21710 0.98745 0.92704 1.01618 1.21355 0.90592 0.85303 1.01650 1.55241 1.19546 1.23736 1.88428 1.00863 0.72786 0.71881 0.73802 1.93545 1.72966 1.86124 1.44994 1.93517 1.50442 1.66071 1.87591 1.30078 1.12176 1.13211 1.25655 1.21072 0.99745 0.91154 0.90839 1.21563 0.94680 1.02769 0.99758 1.21687 0.96251 0.90839 0.95694 1.20318 0.98382 1.01516 0.98857 1.18363 0.91115 0.86334 0.88659 1.86175 1.55994 1.36762 1.45059 1.23351 0.86346 0.90226 1.03019 1.22245 0.97991 1.00183 0.98843 1.20606 0.92716 0.99487 0.98433 0.92814 0.97930 0.98558 0.92497 0.91668 0.91799 0.91411 0.73920 0.82665 0.81503 0.81334 0.90891 0.86723 0.87042 0.90680 0.88967 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.11 -4.34 5.30 30.60 0.16 -4.17 16 11 C 0.14 4.79 4.46 86.38 0.38 5.17 16 12 N -1.11 -33.69 6.00 -187.48 -1.12 -34.81 16 13 S 2.71 86.33 5.45 -56.49 -0.31 86.02 16 14 O -0.99 -38.44 16.67 -122.16 -2.04 -40.48 16 15 O -0.99 -32.55 16.96 -128.00 -2.17 -34.72 16 16 C -0.72 -20.15 5.90 22.43 0.13 -20.02 16 17 C -0.01 -0.20 9.54 22.22 0.21 0.02 16 18 C -0.17 -2.75 10.05 22.25 0.22 -2.52 16 19 C -0.03 -0.42 9.67 22.30 0.22 -0.20 16 20 C -0.19 -3.94 5.75 -19.75 -0.11 -4.05 16 21 C 0.20 5.63 6.13 22.52 0.14 5.77 16 22 O -0.33 -9.93 5.31 -79.76 -0.42 -10.36 16 23 C 0.04 1.11 6.52 72.12 0.47 1.58 16 24 C -0.16 -2.75 6.19 30.75 0.19 -2.56 16 25 C -0.08 -1.15 5.86 29.89 0.18 -0.97 16 26 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 2.13 6.12 -2.39 -0.01 2.12 16 32 H 0.07 2.57 7.08 -2.39 -0.02 2.55 16 33 H 0.42 10.99 8.65 -96.75 -0.84 10.15 16 34 H 0.16 3.03 7.32 -2.91 -0.02 3.01 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.07 1.83 7.99 -2.39 -0.02 1.81 16 38 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -74.29 352.03 -0.52 -74.82 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.20 Total: 17.86 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 3.03 Total: -49.59 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -0.84 Total: -88.99 kcal Atomic # 8 Polarization: -80.93 SS G_CDS: -4.63 Total: -85.56 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 86.33 SS G_CDS: -0.31 Total: 86.02 kcal Total: -74.29 -0.52 -74.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593543781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.357 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds