Wall clock time and date at job start Tue Mar 31 2020 14:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48507 * 109.47341 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.47207 * 30.00054 * 3 2 1 6 6 H 1.48495 * 109.47455 * 150.00150 * 3 2 1 7 7 C 1.39888 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 197.93369 * 7 2 1 9 9 C 1.41217 * 120.00226 * 17.92863 * 7 2 1 10 10 C 1.40833 * 120.17634 * 24.54833 * 9 7 2 11 11 C 1.36434 * 119.81229 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18388 * 0.28410 * 11 10 9 13 13 O 1.35679 * 119.82012 * 179.72146 * 12 11 10 14 14 C 1.42897 * 116.99986 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46939 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46933 * 304.99854 * 15 14 13 17 17 O 1.42894 * 109.47413 * 64.99916 * 15 14 13 18 18 C 1.53002 * 109.47151 * 184.99933 * 15 14 13 19 19 S 1.81404 * 109.46902 * 179.97438 * 18 15 14 20 20 C 1.81406 * 102.99515 * 180.02562 * 19 18 15 21 21 C 1.53008 * 109.46747 * 180.02562 * 20 19 18 22 22 C 1.50696 * 109.46802 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99811 * 179.97438 * 22 21 20 24 24 O 1.21282 * 120.00287 * 359.97438 * 22 21 20 25 25 C 1.39311 * 120.36343 * 359.43993 * 12 11 10 26 26 C 1.36438 * 120.18632 * 0.55851 * 25 12 11 27 27 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.09598 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.90868 * 180.02562 * 11 10 9 30 30 H 1.09005 * 109.47270 * 299.99886 * 14 13 12 31 31 H 1.08998 * 109.47246 * 60.00187 * 14 13 12 32 32 H 0.96695 * 114.00535 * 59.99925 * 17 15 14 33 33 H 1.08989 * 109.47198 * 299.99826 * 18 15 14 34 34 H 1.08999 * 109.46920 * 59.99841 * 18 15 14 35 35 H 1.08997 * 109.46825 * 299.99844 * 20 19 18 36 36 H 1.08993 * 109.47701 * 59.99917 * 20 19 18 37 37 H 1.08997 * 109.46655 * 299.99694 * 21 20 19 38 38 H 1.08999 * 109.46988 * 60.00026 * 21 20 19 39 39 H 0.96999 * 119.99634 * 359.97438 * 23 22 21 40 40 H 0.97001 * 119.99791 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.90790 * 180.28102 * 25 12 11 42 42 H 1.07999 * 120.09909 * 179.70375 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2342 0.2875 9 6 1.3537 -2.4046 -0.3775 10 6 0.2246 -2.3575 -1.2179 11 6 -0.4024 -3.5148 -1.5771 12 6 0.0677 -4.7402 -1.1101 13 8 -0.5649 -5.8861 -1.4674 14 6 -0.0314 -7.1085 -0.9546 15 6 -0.8699 -8.2834 -1.4621 16 1 -1.9160 -8.1225 -1.2016 17 8 -0.7423 -8.3814 -2.8820 18 6 -0.3766 -9.5791 -0.8151 19 16 -1.3713 -10.9719 -1.4163 20 6 -0.6484 -12.3930 -0.5510 21 6 -1.3892 -13.6685 -0.9577 22 6 -0.7883 -14.8491 -0.2394 23 7 -1.2839 -16.0857 -0.4436 24 8 0.1412 -14.6865 0.5225 25 6 1.1874 -4.7960 -0.2831 26 6 1.8260 -3.6479 0.0854 27 1 -0.4850 0.8401 0.0004 28 1 -0.1439 -1.4080 -1.5771 29 1 -1.2682 -3.4805 -2.2219 30 1 0.9986 -7.2253 -1.2917 31 1 -0.0570 -7.0874 0.1349 32 1 0.1641 -8.5253 -3.1865 33 1 0.6694 -9.7400 -1.0756 34 1 -0.4740 -9.5043 0.2680 35 1 0.4044 -12.4839 -0.8181 36 1 -0.7388 -12.2475 0.5254 37 1 -2.4421 -13.5778 -0.6909 38 1 -1.2983 -13.8139 -2.0342 39 1 -2.0276 -16.2157 -1.0526 40 1 -0.8969 -16.8457 0.0186 41 1 1.5483 -5.7503 0.0710 42 1 2.6910 -3.6925 0.7305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600604552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:46 Heat of formation + Delta-G solvation = -120.797893 kcal Electronic energy + Delta-G solvation = -23313.665358 eV Core-core repulsion = 19577.515122 eV Total energy + Delta-G solvation = -3736.150236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.96008 -39.07138 -37.50631 -36.04091 -34.22526 -33.32696 -33.16752 -31.65569 -29.78689 -29.04778 -26.93271 -25.32703 -24.60690 -22.27087 -20.90856 -20.68168 -20.61858 -17.91187 -17.58598 -17.37671 -17.18949 -16.61829 -16.40638 -16.16668 -15.67514 -15.24823 -14.92195 -14.55825 -14.40943 -14.04488 -13.96582 -13.79930 -13.01920 -12.94673 -12.74604 -12.43499 -12.22079 -12.12963 -11.89907 -11.79737 -11.46372 -11.16507 -11.05905 -10.89219 -10.65301 -10.51234 -10.24044 -10.20756 -10.09613 -9.97123 -9.83219 -9.34336 -9.03305 -7.91299 -7.65257 -7.04482 -6.72820 -4.26355 1.20459 2.11494 2.24871 2.77178 2.94257 3.07847 3.08679 3.11924 3.21031 3.81022 3.95130 4.18187 4.30461 4.45004 4.51400 4.61093 4.71499 4.82382 4.99775 5.04223 5.17947 5.19799 5.31107 5.42651 5.57164 5.66091 5.92041 6.04371 6.21730 6.22390 6.71490 6.75410 6.96903 7.10262 7.17791 7.44773 7.54607 7.60473 7.71805 7.77908 7.99955 8.19704 8.43585 8.64303 8.89324 8.97769 10.21633 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.041336 B = 0.001661 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.207461 B =16852.816295 C =17306.267411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.010 4.010 13 O -0.316 6.316 14 C 0.043 3.957 15 C 0.129 3.871 16 H 0.115 0.885 17 O -0.540 6.540 18 C -0.121 4.121 19 S -0.225 6.225 20 C -0.083 4.083 21 C -0.125 4.125 22 C 0.522 3.478 23 N -0.856 5.856 24 O -0.542 6.542 25 C -0.168 4.168 26 C -0.198 4.198 27 H 0.280 0.720 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.373 0.627 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.403 0.597 40 H 0.402 0.598 41 H 0.092 0.908 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -25.265 -2.611 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.152 4.152 11 C -0.137 4.137 12 C -0.053 4.053 13 O -0.232 6.232 14 C -0.036 4.036 15 C 0.068 3.932 16 H 0.132 0.868 17 O -0.345 6.345 18 C -0.270 4.270 19 S 0.003 5.997 20 C -0.232 4.232 21 C -0.166 4.166 22 C 0.305 3.695 23 N -0.420 5.420 24 O -0.419 6.419 25 C -0.187 4.187 26 C -0.218 4.218 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.232 0.768 40 H 0.233 0.767 41 H 0.110 0.890 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.188 -24.702 -2.948 25.413 hybrid contribution 1.993 0.151 1.153 2.307 sum -3.196 -24.551 -1.795 24.823 Atomic orbital electron populations 1.69835 1.07506 1.29159 1.35919 1.25879 0.94719 1.01227 0.92363 0.86322 0.80440 0.80704 0.79286 1.19302 1.20375 1.18723 1.19473 0.98111 0.91253 1.40537 0.90537 1.17605 0.91861 0.92121 0.89857 1.20984 0.98476 0.96312 0.99475 1.19843 1.00875 0.90196 1.02764 1.18610 0.96914 0.84763 1.05035 1.85880 1.54440 1.11980 1.70871 1.23070 0.96910 0.84973 0.98599 1.21567 1.01457 0.88780 0.81410 0.86754 1.86670 1.33076 1.95022 1.19709 1.24127 1.02204 0.96251 1.04422 1.87011 1.49346 1.01308 1.62033 1.23121 1.02702 0.94088 1.03313 1.21337 1.01692 0.91287 1.02333 1.20580 0.82730 0.84693 0.81495 1.43867 1.38990 1.09145 1.49984 1.90781 1.28642 1.85434 1.37008 1.20391 0.97884 0.97728 1.02693 1.20554 1.03214 0.92506 1.05553 0.90894 0.85637 0.88386 0.92730 0.92211 0.77996 0.89370 0.88636 0.89292 0.89313 0.87665 0.87640 0.76839 0.76678 0.88974 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.71 10.96 55.54 0.61 -20.11 16 2 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.33 9.04 -37.83 -0.34 -12.67 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 9 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 10 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 11 C -0.12 -2.88 9.92 -39.83 -0.40 -3.28 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 O -0.32 -6.43 10.09 -23.60 -0.24 -6.67 16 14 C 0.04 0.64 4.36 37.16 0.16 0.81 16 15 C 0.13 1.60 3.30 -26.73 -0.09 1.51 16 16 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 17 O -0.54 -7.21 12.90 -40.09 -0.52 -7.73 16 18 C -0.12 -1.17 5.64 37.16 0.21 -0.96 16 19 S -0.22 -2.18 21.38 -107.50 -2.30 -4.48 16 20 C -0.08 -0.67 5.23 37.16 0.19 -0.47 16 21 C -0.13 -0.70 5.71 -27.88 -0.16 -0.86 16 22 C 0.52 3.68 8.10 -10.99 -0.09 3.59 16 23 N -0.86 -2.77 8.87 31.22 0.28 -2.49 16 24 O -0.54 -6.38 16.82 5.56 0.09 -6.29 16 25 C -0.17 -3.78 8.96 -39.83 -0.36 -4.14 16 26 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.05 0.76 7.64 -51.93 -0.40 0.37 16 31 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 32 H 0.37 3.71 9.05 45.56 0.41 4.12 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 40 H 0.40 1.08 8.93 -40.82 -0.36 0.72 16 41 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -33.23 371.75 -9.14 -42.38 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.11 Total: 8.59 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.53 Total: -22.50 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.89 Total: -22.59 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.66 Total: -20.69 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.30 Total: -4.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.23 -9.14 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600604552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.421 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds