Wall clock time and date at job start Tue Mar 31 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48507 * 109.47341 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.47207 * 30.00054 * 3 2 1 6 6 H 1.48495 * 109.47455 * 150.00150 * 3 2 1 7 7 C 1.39888 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 197.93369 * 7 2 1 9 9 C 1.41217 * 120.00226 * 17.92863 * 7 2 1 10 10 C 1.40833 * 120.17634 * 24.54833 * 9 7 2 11 11 C 1.36434 * 119.81229 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18388 * 0.28410 * 11 10 9 13 13 O 1.35679 * 119.82012 * 179.72146 * 12 11 10 14 14 C 1.42897 * 116.99986 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46939 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46933 * 304.99854 * 15 14 13 17 17 O 1.42894 * 109.47413 * 64.99916 * 15 14 13 18 18 C 1.53002 * 109.47151 * 184.99933 * 15 14 13 19 19 S 1.81404 * 109.46902 * 179.97438 * 18 15 14 20 20 C 1.81406 * 102.99515 * 180.02562 * 19 18 15 21 21 C 1.53008 * 109.46747 * 180.02562 * 20 19 18 22 22 C 1.50696 * 109.46802 * 179.97438 * 21 20 19 23 23 N 1.34781 * 119.99811 * 179.97438 * 22 21 20 24 24 O 1.21282 * 120.00287 * 359.97438 * 22 21 20 25 25 C 1.39311 * 120.36343 * 359.43993 * 12 11 10 26 26 C 1.36438 * 120.18632 * 0.55851 * 25 12 11 27 27 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.09598 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.90868 * 180.02562 * 11 10 9 30 30 H 1.09005 * 109.47270 * 299.99886 * 14 13 12 31 31 H 1.08998 * 109.47246 * 60.00187 * 14 13 12 32 32 H 0.96695 * 114.00535 * 59.99925 * 17 15 14 33 33 H 1.08989 * 109.47198 * 299.99826 * 18 15 14 34 34 H 1.08999 * 109.46920 * 59.99841 * 18 15 14 35 35 H 1.08997 * 109.46825 * 299.99844 * 20 19 18 36 36 H 1.08993 * 109.47701 * 59.99917 * 20 19 18 37 37 H 1.08997 * 109.46655 * 299.99694 * 21 20 19 38 38 H 1.08999 * 109.46988 * 60.00026 * 21 20 19 39 39 H 0.96999 * 119.99634 * 359.97438 * 23 22 21 40 40 H 0.97001 * 119.99791 * 179.97438 * 23 22 21 41 41 H 1.08003 * 119.90790 * 180.28102 * 25 12 11 42 42 H 1.07999 * 120.09909 * 179.70375 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2342 0.2875 9 6 1.3537 -2.4046 -0.3775 10 6 0.2246 -2.3575 -1.2179 11 6 -0.4024 -3.5148 -1.5771 12 6 0.0677 -4.7402 -1.1101 13 8 -0.5649 -5.8861 -1.4674 14 6 -0.0314 -7.1085 -0.9546 15 6 -0.8699 -8.2834 -1.4621 16 1 -1.9160 -8.1225 -1.2016 17 8 -0.7423 -8.3814 -2.8820 18 6 -0.3766 -9.5791 -0.8151 19 16 -1.3713 -10.9719 -1.4163 20 6 -0.6484 -12.3930 -0.5510 21 6 -1.3892 -13.6685 -0.9577 22 6 -0.7883 -14.8491 -0.2394 23 7 -1.2839 -16.0857 -0.4436 24 8 0.1412 -14.6865 0.5225 25 6 1.1874 -4.7960 -0.2831 26 6 1.8260 -3.6479 0.0854 27 1 -0.4850 0.8401 0.0004 28 1 -0.1439 -1.4080 -1.5771 29 1 -1.2682 -3.4805 -2.2219 30 1 0.9986 -7.2253 -1.2917 31 1 -0.0570 -7.0874 0.1349 32 1 0.1641 -8.5253 -3.1865 33 1 0.6694 -9.7400 -1.0756 34 1 -0.4740 -9.5043 0.2680 35 1 0.4044 -12.4839 -0.8181 36 1 -0.7388 -12.2475 0.5254 37 1 -2.4421 -13.5778 -0.6909 38 1 -1.2983 -13.8139 -2.0342 39 1 -2.0276 -16.2157 -1.0526 40 1 -0.8969 -16.8457 0.0186 41 1 1.5483 -5.7503 0.0710 42 1 2.6910 -3.6925 0.7305 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600604552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:45 Heat of formation + Delta-G solvation = -145.148428 kcal Electronic energy + Delta-G solvation = -23314.721277 eV Core-core repulsion = 19577.515122 eV Total energy + Delta-G solvation = -3737.206155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65497 -40.52053 -38.87952 -37.59317 -35.18541 -34.72694 -33.67348 -32.70858 -31.60611 -30.91200 -28.13829 -26.50567 -25.85028 -23.54392 -22.51666 -22.24592 -21.36553 -19.26326 -18.84628 -18.31936 -18.03080 -17.70711 -17.48404 -17.04766 -16.78102 -16.46061 -16.10143 -15.74634 -15.70563 -15.36106 -15.04917 -14.76639 -14.64346 -14.08554 -13.95380 -13.71985 -13.55567 -13.43544 -13.14324 -13.03797 -12.80577 -12.61259 -12.40287 -12.37907 -12.14129 -11.70466 -11.59999 -11.30732 -11.14698 -11.01554 -10.92536 -10.88470 -10.67351 -9.56489 -8.93258 -8.65797 -8.59681 -6.23189 0.48039 0.94624 1.02366 1.40057 1.52883 1.53130 1.53473 1.59900 2.22900 2.49881 2.70040 2.72572 3.39653 3.65705 3.69838 3.77936 3.85427 3.92239 3.92753 4.14556 4.17880 4.28015 4.34774 4.43813 4.53054 4.56635 4.70002 4.84436 4.86652 4.91774 5.06568 5.21496 5.28125 5.58060 5.64188 5.87845 5.88062 6.05580 6.26097 6.43689 6.55978 6.75132 6.81190 6.94927 7.09444 7.32305 8.36891 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.041336 B = 0.001661 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.207461 B =16852.816295 C =17306.267411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.152 4.152 11 C -0.133 4.133 12 C 0.000 4.000 13 O -0.330 6.330 14 C 0.034 3.966 15 C 0.139 3.861 16 H 0.101 0.899 17 O -0.558 6.558 18 C -0.114 4.114 19 S -0.244 6.244 20 C -0.074 4.074 21 C -0.120 4.120 22 C 0.520 3.480 23 N -0.836 5.836 24 O -0.597 6.597 25 C -0.165 4.165 26 C -0.208 4.208 27 H 0.287 0.713 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.387 0.613 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.420 0.580 40 H 0.407 0.593 41 H 0.130 0.870 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -26.955 -2.710 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.044 4.044 13 O -0.245 6.245 14 C -0.044 4.044 15 C 0.078 3.922 16 H 0.119 0.881 17 O -0.365 6.365 18 C -0.263 4.263 19 S -0.016 6.016 20 C -0.223 4.223 21 C -0.161 4.161 22 C 0.304 3.696 23 N -0.400 5.400 24 O -0.478 6.478 25 C -0.183 4.183 26 C -0.227 4.227 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.252 0.748 40 H 0.239 0.761 41 H 0.148 0.852 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.020 -26.454 -3.078 27.102 hybrid contribution 1.842 0.427 1.142 2.209 sum -3.178 -26.027 -1.935 26.292 Atomic orbital electron populations 1.69892 1.08982 1.30474 1.36459 1.26736 0.95471 1.04485 0.91335 0.85201 0.79043 0.75985 0.79443 1.18782 1.19385 1.18191 1.19724 0.98375 0.92431 1.42405 0.90569 1.17966 0.92665 0.93398 0.90793 1.20896 0.99320 0.96384 1.00560 1.20009 1.01277 0.90687 1.03258 1.18672 0.96506 0.85440 1.03736 1.85870 1.54780 1.12732 1.71168 1.23461 0.98205 0.83325 0.99374 1.21405 1.00401 0.89100 0.81269 0.88071 1.86637 1.34580 1.95083 1.20199 1.24009 1.02873 0.94689 1.04689 1.87059 1.49840 1.02211 1.62495 1.23081 1.02485 0.94239 1.02481 1.21346 1.02068 0.89512 1.03136 1.20809 0.82057 0.85879 0.80831 1.43729 1.38745 1.08155 1.49366 1.90762 1.31167 1.86291 1.39554 1.20703 0.97145 0.98710 1.01785 1.20804 1.03731 0.92558 1.05649 0.90203 0.87260 0.87526 0.91112 0.91109 0.76360 0.87805 0.87624 0.89981 0.90158 0.85952 0.85874 0.74822 0.76125 0.85227 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.23 10.96 21.82 0.24 -43.99 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.84 16 10 C -0.15 -8.24 8.64 22.48 0.19 -8.05 16 11 C -0.13 -6.62 9.92 22.11 0.22 -6.40 16 12 C 0.00 0.02 6.71 22.79 0.15 0.17 16 13 O -0.33 -12.94 10.09 -85.32 -0.86 -13.80 16 14 C 0.03 0.93 4.36 71.98 0.31 1.24 16 15 C 0.14 3.20 3.30 30.59 0.10 3.30 16 16 H 0.10 2.60 8.14 -2.39 -0.02 2.59 16 17 O -0.56 -13.94 12.90 -144.34 -1.86 -15.80 16 18 C -0.11 -1.94 5.64 71.98 0.41 -1.53 16 19 S -0.24 -4.28 21.38 -56.49 -1.21 -5.49 16 20 C -0.07 -1.07 5.23 71.98 0.38 -0.69 16 21 C -0.12 -1.08 5.71 29.85 0.17 -0.91 16 22 C 0.52 6.56 8.10 87.66 0.71 7.27 16 23 N -0.84 -3.68 8.87 -173.53 -1.54 -5.22 16 24 O -0.60 -13.80 16.82 -3.03 -0.05 -13.85 16 25 C -0.16 -7.16 8.96 22.11 0.20 -6.96 16 26 C -0.21 -10.17 9.74 22.48 0.22 -9.95 16 27 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 28 H 0.11 6.15 6.16 -2.91 -0.02 6.14 16 29 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.07 1.75 7.64 -2.38 -0.02 1.73 16 31 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 32 H 0.39 6.90 9.05 -74.06 -0.67 6.23 16 33 H 0.10 1.46 8.14 -2.40 -0.02 1.44 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.42 -0.97 8.83 -92.71 -0.82 -1.79 16 40 H 0.41 1.47 8.93 -92.71 -0.83 0.65 16 41 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -73.39 371.75 -0.90 -74.29 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -1.24 Total: 27.71 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.59 Total: -44.51 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -1.30 Total: -49.21 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -2.77 Total: -43.45 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -1.21 Total: -5.49 kcal Total: -73.39 -0.90 -74.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600604552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.859 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds