Wall clock time and date at job start Tue Mar 31 2020 14:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99477 * 2 1 4 4 H 1.48502 * 109.46667 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47078 * 299.99680 * 3 2 1 6 6 H 1.48503 * 109.47233 * 59.99946 * 3 2 1 7 7 C 1.39945 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99916 * 168.43479 * 7 2 1 9 9 C 1.41396 * 119.99648 * 348.42881 * 7 2 1 10 10 C 1.40725 * 120.24855 * 331.66039 * 9 7 2 11 11 C 1.37603 * 119.74445 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.24968 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.49776 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.25289 * 359.97438 * 13 12 11 15 15 S 1.76201 * 120.12746 * 180.02562 * 14 13 12 16 16 O 1.42096 * 106.40464 * 359.39698 * 15 14 13 17 17 O 1.42105 * 106.39998 * 132.31664 * 15 14 13 18 18 N 1.65599 * 107.21901 * 245.85412 * 15 14 13 19 19 C 1.46500 * 119.99590 * 62.74981 * 18 15 14 20 20 C 1.53010 * 109.46682 * 165.86529 * 19 18 15 21 21 H 1.08997 * 109.52273 * 54.87714 * 20 19 18 22 22 C 1.53172 * 109.51977 * 175.00175 * 20 19 18 23 23 C 1.53179 * 109.03865 * 176.88598 * 22 20 19 24 24 C 1.53091 * 109.15886 * 303.02011 * 23 22 20 25 25 O 1.42899 * 109.41942 * 57.60727 * 24 23 22 26 26 C 1.42899 * 114.09566 * 298.84242 * 25 24 23 27 27 H 0.96993 * 120.00371 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12862 * 359.94930 * 10 9 7 29 29 H 1.08002 * 119.87336 * 179.71921 * 11 10 9 30 30 H 1.08001 * 119.75111 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.87004 * 180.02562 * 13 12 11 32 32 H 0.97001 * 120.00177 * 242.75314 * 18 15 14 33 33 H 1.08995 * 109.47531 * 285.86206 * 19 18 15 34 34 H 1.08995 * 109.47577 * 45.87125 * 19 18 15 35 35 H 1.09002 * 109.54880 * 296.74925 * 22 20 19 36 36 H 1.09000 * 109.54847 * 56.92645 * 22 20 19 37 37 H 1.09004 * 109.51975 * 62.92311 * 23 22 20 38 38 H 1.08995 * 109.52860 * 183.04872 * 23 22 20 39 39 H 1.09011 * 109.47716 * 177.58859 * 24 23 22 40 40 H 1.08996 * 109.48406 * 297.60790 * 24 23 22 41 41 H 1.09005 * 109.48093 * 301.17449 * 26 25 24 42 42 H 1.09002 * 109.48533 * 181.13843 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2126 6 1 1.8833 2.3966 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0716 -1.2214 -0.1870 9 6 1.3227 -2.4239 0.2467 10 6 0.1621 -2.4329 1.0425 11 6 -0.4971 -3.6182 1.2749 12 6 -0.0222 -4.8005 0.7280 13 6 1.1200 -4.8034 -0.0574 14 6 1.7955 -3.6296 -0.3031 15 16 3.2467 -3.6370 -1.3025 16 8 3.4632 -4.9881 -1.6856 17 8 3.0946 -2.5785 -2.2384 18 7 4.5167 -3.2185 -0.3256 19 6 4.8819 -4.0728 0.8071 20 6 6.2659 -3.6725 1.3223 21 1 6.2728 -2.6085 1.5588 22 6 6.5961 -4.4790 2.5819 23 6 8.0137 -4.1269 3.0434 24 6 8.9965 -4.4029 1.9025 25 8 8.6143 -3.6456 0.7525 26 6 7.3163 -3.9660 0.2479 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2096 -1.5132 1.4695 29 1 -1.3855 -3.6283 1.8891 30 1 -0.5461 -5.7262 0.9153 31 1 1.4808 -5.7301 -0.4787 32 1 5.0187 -2.4078 -0.5034 33 1 4.1486 -3.9523 1.6044 34 1 4.9012 -5.1141 0.4855 35 1 5.8845 -4.2324 3.3699 36 1 6.5380 -5.5443 2.3586 37 1 8.0570 -3.0720 3.3143 38 1 8.2773 -4.7361 3.9079 39 1 10.0014 -4.1138 2.2106 40 1 8.9824 -5.4653 1.6595 41 1 7.2800 -5.0228 -0.0169 42 1 7.1106 -3.3624 -0.6360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601313141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:56 Heat of formation + Delta-G solvation = -141.151066 kcal Electronic energy + Delta-G solvation = -26328.314747 eV Core-core repulsion = 22591.281930 eV Total energy + Delta-G solvation = -3737.032816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41193 -39.37577 -38.03569 -36.86409 -36.65343 -35.66750 -34.16311 -32.08276 -31.75329 -31.34244 -27.37741 -26.70721 -25.92235 -23.43466 -23.08665 -22.86946 -21.22333 -20.13900 -19.50208 -18.46880 -17.95452 -17.34467 -17.04932 -17.02588 -16.77218 -16.05315 -15.84545 -15.79454 -15.27655 -15.05593 -14.91996 -14.51419 -14.47018 -13.99367 -13.66072 -13.57566 -13.28880 -13.26506 -12.98760 -12.93385 -12.84232 -12.80284 -12.77090 -12.48566 -12.11856 -12.07805 -11.97265 -11.64689 -11.49705 -11.24124 -11.20021 -11.12618 -10.45102 -10.18327 -9.83453 -9.42828 -8.79571 -6.61081 -0.15792 0.53357 0.97187 1.36395 1.49221 1.51457 2.15238 2.35604 2.63527 2.93992 3.01523 3.47982 3.73921 3.78923 3.84581 3.95522 4.07276 4.22177 4.33993 4.40710 4.50749 4.51337 4.59639 4.66680 4.72421 4.76847 4.84562 4.86638 4.98119 5.01950 5.12752 5.15580 5.19598 5.27736 5.31564 5.43874 5.52490 5.71241 5.83160 6.01193 6.08533 6.20094 6.28823 6.48265 6.68004 6.83992 8.16493 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.004855 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.038547 B = 5765.815517 C = 6662.417314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.975 3.025 4 H -0.248 1.248 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.473 4.473 8 H 0.094 0.906 9 C 0.162 3.838 10 C -0.186 4.186 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.016 4.016 14 C -0.791 4.791 15 S 2.720 3.280 16 O -1.008 7.008 17 O -1.000 7.000 18 N -1.111 6.111 19 C 0.127 3.873 20 C -0.120 4.120 21 H 0.084 0.916 22 C -0.118 4.118 23 C -0.149 4.149 24 C 0.050 3.950 25 O -0.402 6.402 26 C 0.062 3.938 27 H 0.295 0.705 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.420 0.580 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 -4.804 7.751 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.501 4.501 8 H 0.112 0.888 9 C 0.157 3.843 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.270 4.270 13 C -0.035 4.035 14 C -0.885 4.885 15 S 2.816 3.184 16 O -0.998 6.998 17 O -0.990 6.990 18 N -0.872 5.872 19 C 0.001 3.999 20 C -0.141 4.141 21 H 0.102 0.898 22 C -0.157 4.157 23 C -0.187 4.187 24 C -0.026 4.026 25 O -0.322 6.322 26 C -0.015 4.015 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.255 0.745 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.104 -4.893 6.781 14.712 hybrid contribution -0.716 1.026 0.436 1.325 sum 11.388 -3.867 7.217 14.026 Atomic orbital electron populations 1.69822 1.08994 1.31270 1.33171 1.26799 0.95641 1.04802 0.90693 0.85247 0.80166 0.75951 0.79185 1.17090 1.19414 1.17904 1.20172 0.97316 0.91519 1.41084 0.88841 1.17318 0.90931 0.90556 0.85493 1.21576 0.99144 0.97419 1.02472 1.21253 0.97962 0.92953 0.97278 1.20896 1.00631 0.98046 1.07465 1.20583 0.93994 0.95404 0.93568 1.30153 1.26918 1.00770 1.30678 1.00347 0.73251 0.71662 0.73102 1.93422 1.86291 1.37830 1.82256 1.93494 1.86625 1.57389 1.61500 1.55320 1.49156 1.37040 1.45691 1.21318 0.96738 0.93940 0.87896 1.21930 0.93101 1.02068 0.96973 0.89790 1.21636 0.97626 1.00226 0.96165 1.22154 0.94570 1.02858 0.99133 1.22818 0.98988 0.95759 0.85056 1.87913 1.33479 1.64348 1.46416 1.22676 0.81890 1.00902 0.96009 0.89428 0.86825 0.86039 0.85485 0.85893 0.74462 0.91511 0.90308 0.90502 0.90573 0.91531 0.88706 0.87617 0.92347 0.92323 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.29 10.86 21.83 0.24 -40.05 16 2 C 0.04 1.85 5.24 85.26 0.45 2.30 16 3 Si 0.97 36.61 29.58 68.60 2.03 38.64 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 7 C -0.47 -23.81 7.63 23.46 0.18 -23.63 16 8 H 0.09 4.39 5.84 -2.91 -0.02 4.37 16 9 C 0.16 8.24 5.55 -21.29 -0.12 8.12 16 10 C -0.19 -9.22 8.66 22.73 0.20 -9.02 16 11 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16 12 C -0.25 -10.37 10.05 22.46 0.23 -10.14 16 13 C -0.02 -0.69 9.53 22.22 0.21 -0.48 16 14 C -0.79 -37.35 5.90 22.73 0.13 -37.21 16 15 S 2.72 116.92 4.96 -56.49 -0.28 116.64 16 16 O -1.01 -44.41 16.53 -128.00 -2.12 -46.52 16 17 O -1.00 -49.98 16.49 -128.00 -2.11 -52.09 16 18 N -1.11 -36.97 4.74 -187.49 -0.89 -37.86 16 19 C 0.13 3.52 5.58 86.38 0.48 4.00 16 20 C -0.12 -2.71 2.41 -10.70 -0.03 -2.74 16 21 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 22 C -0.12 -2.11 5.31 30.71 0.16 -1.95 16 23 C -0.15 -2.26 6.14 30.68 0.19 -2.07 16 24 C 0.05 0.83 6.84 72.01 0.49 1.32 16 25 O -0.40 -9.43 10.77 -148.98 -1.60 -11.04 16 26 C 0.06 1.43 5.98 72.01 0.43 1.86 16 27 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 28 H 0.11 5.77 6.22 -2.91 -0.02 5.76 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.12 4.91 7.32 -2.91 -0.02 4.89 16 32 H 0.42 12.60 8.21 -96.74 -0.79 11.81 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.11 7.82 -2.39 -0.02 2.10 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.09 2.16 7.61 -2.39 -0.02 2.14 16 Total: -1.00 -65.32 350.81 -1.26 -66.58 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.24 Total: 38.41 kcal Atomic # 6 Polarization: -75.94 SS G_CDS: 3.23 Total: -72.71 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -0.65 Total: -77.91 kcal Atomic # 8 Polarization: -103.82 SS G_CDS: -5.83 Total: -109.65 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Atomic # 16 Polarization: 116.92 SS G_CDS: -0.28 Total: 116.64 kcal Total: -65.32 -1.26 -66.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601313141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.572 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds