Wall clock time and date at job start Tue Mar 31 2020 14:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86791 * 120.00196 * 2 1 4 4 H 1.48501 * 109.47307 * 89.99589 * 3 2 1 5 5 H 1.48502 * 109.47375 * 209.99650 * 3 2 1 6 6 H 1.48499 * 109.47278 * 329.99464 * 3 2 1 7 7 C 1.39949 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99411 * 164.34280 * 7 2 1 9 9 C 1.41391 * 120.00590 * 344.34082 * 7 2 1 10 10 C 1.40733 * 120.24215 * 327.55581 * 9 7 2 11 11 C 1.37594 * 119.74576 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24830 * 0.02562 * 11 10 9 13 13 C 1.38605 * 120.49846 * 359.97438 * 12 11 10 14 14 C 1.37635 * 120.25269 * 359.67426 * 13 12 11 15 15 S 1.76198 * 120.13370 * 180.32120 * 14 13 12 16 16 O 1.42102 * 106.40339 * 225.19440 * 15 14 13 17 17 O 1.42098 * 106.40266 * 358.11270 * 15 14 13 18 18 N 1.65597 * 107.22299 * 111.65257 * 15 14 13 19 19 C 1.46498 * 119.99877 * 66.68547 * 18 15 14 20 20 C 1.53001 * 109.46961 * 166.48746 * 19 18 15 21 21 C 1.52994 * 112.85436 * 64.90786 * 20 19 18 22 22 O 1.42901 * 109.46984 * 299.55996 * 21 20 19 23 23 C 1.53788 * 113.61418 * 293.70969 * 20 19 18 24 24 C 1.53955 * 87.01881 * 220.04978 * 23 20 19 25 25 C 1.53782 * 87.11428 * 25.36051 * 24 23 20 26 26 H 0.97002 * 120.00227 * 173.21976 * 1 2 3 27 27 H 1.08003 * 120.12926 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87804 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.74938 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.87449 * 179.97438 * 13 12 11 31 31 H 0.96995 * 120.00247 * 246.69647 * 18 15 14 32 32 H 1.09001 * 109.47759 * 286.48871 * 19 18 15 33 33 H 1.08997 * 109.47171 * 46.49153 * 19 18 15 34 34 H 1.09004 * 109.47336 * 59.55215 * 21 20 19 35 35 H 1.08997 * 109.47744 * 179.55870 * 21 20 19 36 36 H 0.96697 * 114.00278 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.61337 * 334.56517 * 23 20 19 38 38 H 1.08995 * 113.61519 * 105.47283 * 23 20 19 39 39 H 1.09000 * 113.53762 * 270.81151 * 24 23 20 40 40 H 1.09003 * 113.74232 * 139.94060 * 24 23 20 41 41 H 1.09001 * 113.61920 * 220.08598 * 25 24 23 42 42 H 1.09002 * 113.68967 * 89.19750 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4897 2.0464 1.4001 5 1 3.5399 1.4401 -0.7000 6 1 1.4398 2.6526 -0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0579 -1.2295 -0.2519 9 6 1.3403 -2.4137 0.3316 10 6 0.2860 -2.4052 1.2638 11 6 -0.3562 -3.5806 1.5788 12 6 0.0321 -4.7704 0.9819 13 6 1.0691 -4.7905 0.0625 14 6 1.7210 -3.6257 -0.2731 15 16 3.0332 -3.6536 -1.4486 16 8 4.0786 -2.8614 -0.9020 17 8 3.2044 -5.0127 -1.8267 18 7 2.4994 -2.8565 -2.7984 19 6 2.2291 -1.4179 -2.7405 20 6 2.0812 -0.8692 -4.1611 21 6 0.8665 -1.4403 -4.8952 22 8 0.9951 -2.8599 -4.9965 23 6 3.3803 -0.9269 -4.9821 24 6 2.9983 0.4585 -5.5341 25 6 2.1868 0.6628 -4.2439 26 1 -0.4850 -0.8342 -0.0992 27 1 -0.0173 -1.4798 1.7308 28 1 -1.1653 -3.5766 2.2942 29 1 -0.4773 -5.6884 1.2354 30 1 1.3635 -5.7230 -0.3960 31 1 2.3656 -3.3422 -3.6273 32 1 1.3071 -1.2434 -2.1859 33 1 3.0552 -0.9128 -2.2401 34 1 -0.0404 -1.1963 -4.3418 35 1 0.8096 -1.0084 -5.8944 36 1 0.2583 -3.2901 -5.4515 37 1 4.2833 -0.9198 -4.3716 38 1 3.3850 -1.7127 -5.7374 39 1 2.3843 0.4145 -6.4336 40 1 3.8431 1.1405 -5.6311 41 1 1.2293 1.1585 -4.4040 42 1 2.7616 1.1054 -3.4304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601389155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:38 Heat of formation + Delta-G solvation = -95.125288 kcal Electronic energy + Delta-G solvation = -27572.157078 eV Core-core repulsion = 23837.120090 eV Total energy + Delta-G solvation = -3735.036989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.67359 -37.88954 -36.24769 -35.93705 -34.80643 -34.30444 -33.53597 -30.19824 -29.42261 -28.24089 -25.72630 -25.43196 -25.01117 -22.04687 -21.72582 -21.16966 -18.76813 -18.26989 -18.05150 -17.32116 -16.57517 -16.17849 -15.63019 -15.21544 -14.85945 -14.73053 -14.36949 -13.98166 -13.82216 -13.53738 -13.36064 -13.16749 -12.89369 -12.49247 -12.23898 -12.07699 -11.83333 -11.53124 -11.31261 -11.22331 -11.17952 -11.07073 -11.03936 -10.86916 -10.51618 -10.49831 -10.31573 -10.19794 -9.99006 -9.77619 -9.57329 -9.32860 -9.21243 -8.42362 -8.21015 -7.76270 -7.38126 -4.82608 1.64231 2.23177 2.63428 3.05954 3.14354 3.25724 3.84592 3.95592 4.29850 4.38662 4.72084 4.77526 4.85110 4.93114 5.17553 5.21018 5.29588 5.46247 5.57896 5.71791 5.74422 5.92510 5.94722 5.97660 6.03944 6.06678 6.18339 6.26534 6.29101 6.38613 6.60311 6.64760 6.72626 6.87173 6.90593 7.17352 7.30830 7.40589 7.58375 7.68991 7.71114 7.85417 7.99658 8.12431 8.41291 8.61170 9.83624 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.007587 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.867619 B = 3689.517439 C = 4964.539458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.044 3.956 3 Si 1.053 2.947 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.119 0.881 9 C 0.169 3.831 10 C -0.209 4.209 11 C -0.058 4.058 12 C -0.258 4.258 13 C 0.010 3.990 14 C -0.774 4.774 15 S 2.707 3.293 16 O -0.978 6.978 17 O -1.002 7.002 18 N -1.108 6.108 19 C 0.148 3.852 20 C -0.095 4.095 21 C 0.105 3.895 22 O -0.566 6.566 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.124 4.124 26 H 0.302 0.698 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.377 0.623 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 2.784 -9.748 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.179 4.179 3 Si 0.876 3.124 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.559 4.559 8 H 0.137 0.863 9 C 0.164 3.836 10 C -0.228 4.228 11 C -0.077 4.077 12 C -0.278 4.278 13 C -0.010 4.010 14 C -0.868 4.868 15 S 2.803 3.197 16 O -0.968 6.968 17 O -0.993 6.993 18 N -0.870 5.870 19 C 0.022 3.978 20 C -0.096 4.096 21 C 0.027 3.973 22 O -0.371 6.371 23 C -0.163 4.163 24 C -0.181 4.181 25 C -0.163 4.163 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.254 0.746 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.224 0.776 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.747 4.285 -9.129 10.112 hybrid contribution -1.473 -1.892 -0.161 2.403 sum -0.726 2.393 -9.290 9.621 Atomic orbital electron populations 1.70431 1.08046 1.34788 1.28182 1.27028 0.95611 1.04135 0.91138 0.83805 0.76050 0.73534 0.79024 1.19669 1.18942 1.19597 1.21588 1.01247 0.92348 1.40699 0.86293 1.17095 0.89095 0.90634 0.86764 1.21405 1.02115 0.97213 1.02111 1.20857 0.96852 0.93333 0.96695 1.20494 1.03705 0.96954 1.06690 1.20336 0.91959 0.95457 0.93207 1.30013 1.29603 1.00800 1.26354 1.00786 0.74403 0.71533 0.72941 1.93457 1.54532 1.70268 1.78560 1.93440 1.86962 1.35304 1.83584 1.55402 1.86525 1.17481 1.27640 1.21513 1.02821 0.79633 0.93840 1.22149 0.95219 0.95844 0.96419 1.21875 0.96786 0.80837 0.97796 1.86275 1.49278 1.19925 1.81640 1.22925 0.97417 0.96767 0.99195 1.22903 1.00056 0.97901 0.97243 1.22909 1.00828 0.94166 0.98368 0.88351 0.87040 0.88629 0.88489 0.87245 0.74631 0.90055 0.90415 0.93160 0.93878 0.77615 0.89670 0.91297 0.90607 0.91478 0.91140 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.62 12.45 55.55 0.69 -17.92 16 2 C 0.04 0.99 4.25 -17.34 -0.07 0.92 16 3 Si 1.05 19.95 29.96 -169.99 -5.09 14.86 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.53 -12.86 4.77 -37.74 -0.18 -13.04 16 8 H 0.12 2.98 4.45 -52.48 -0.23 2.74 16 9 C 0.17 4.21 5.18 -106.83 -0.55 3.66 16 10 C -0.21 -5.02 7.76 -38.87 -0.30 -5.32 16 11 C -0.06 -1.29 10.02 -39.66 -0.40 -1.68 16 12 C -0.26 -5.62 10.05 -39.29 -0.39 -6.01 16 13 C 0.01 0.24 9.53 -39.67 -0.38 -0.14 16 14 C -0.77 -18.64 5.97 -38.87 -0.23 -18.87 16 15 S 2.71 61.26 5.44 -107.50 -0.58 60.67 16 16 O -0.98 -24.26 14.87 -57.17 -0.85 -25.11 16 17 O -1.00 -23.82 16.97 -57.17 -0.97 -24.79 16 18 N -1.11 -21.43 5.64 -10.61 -0.06 -21.49 16 19 C 0.15 2.76 3.68 -4.04 -0.01 2.75 16 20 C -0.09 -1.39 0.84 -153.69 -0.13 -1.52 16 21 C 0.10 1.34 6.29 37.15 0.23 1.58 16 22 O -0.57 -7.28 10.81 -35.23 -0.38 -7.66 16 23 C -0.13 -1.68 7.11 -25.82 -0.18 -1.86 16 24 C -0.14 -1.60 7.74 -25.83 -0.20 -1.80 16 25 C -0.12 -1.62 7.23 -25.92 -0.19 -1.81 16 26 H 0.30 7.31 6.23 -40.82 -0.25 7.06 16 27 H 0.11 2.70 6.65 -52.48 -0.35 2.35 16 28 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.11 2.34 7.33 -52.49 -0.38 1.96 16 31 H 0.42 7.42 6.06 -34.47 -0.21 7.21 16 32 H 0.08 1.68 5.87 -51.93 -0.31 1.38 16 33 H 0.08 1.54 6.39 -51.93 -0.33 1.21 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.46 7.30 -51.93 -0.38 0.08 16 36 H 0.38 3.16 9.12 45.56 0.42 3.58 16 37 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.08 0.75 7.60 -51.93 -0.39 0.35 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 42 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -29.61 339.65 -9.71 -39.32 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -4.59 Total: 20.16 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: -2.99 Total: -43.16 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.63 Total: -39.41 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -2.20 Total: -57.55 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.09 Total: 14.86 kcal Atomic # 16 Polarization: 61.26 SS G_CDS: -0.58 Total: 60.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.61 -9.71 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601389155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.805 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds