Wall clock time and date at job start Tue Mar 31 2020 14:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86791 * 120.00196 * 2 1 4 4 H 1.48501 * 109.47307 * 89.99589 * 3 2 1 5 5 H 1.48502 * 109.47375 * 209.99650 * 3 2 1 6 6 H 1.48499 * 109.47278 * 329.99464 * 3 2 1 7 7 C 1.39949 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99411 * 164.34280 * 7 2 1 9 9 C 1.41391 * 120.00590 * 344.34082 * 7 2 1 10 10 C 1.40733 * 120.24215 * 327.55581 * 9 7 2 11 11 C 1.37594 * 119.74576 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24830 * 0.02562 * 11 10 9 13 13 C 1.38605 * 120.49846 * 359.97438 * 12 11 10 14 14 C 1.37635 * 120.25269 * 359.67426 * 13 12 11 15 15 S 1.76198 * 120.13370 * 180.32120 * 14 13 12 16 16 O 1.42102 * 106.40339 * 225.19440 * 15 14 13 17 17 O 1.42098 * 106.40266 * 358.11270 * 15 14 13 18 18 N 1.65597 * 107.22299 * 111.65257 * 15 14 13 19 19 C 1.46498 * 119.99877 * 66.68547 * 18 15 14 20 20 C 1.53001 * 109.46961 * 166.48746 * 19 18 15 21 21 C 1.52994 * 112.85436 * 64.90786 * 20 19 18 22 22 O 1.42901 * 109.46984 * 299.55996 * 21 20 19 23 23 C 1.53788 * 113.61418 * 293.70969 * 20 19 18 24 24 C 1.53955 * 87.01881 * 220.04978 * 23 20 19 25 25 C 1.53782 * 87.11428 * 25.36051 * 24 23 20 26 26 H 0.97002 * 120.00227 * 173.21976 * 1 2 3 27 27 H 1.08003 * 120.12926 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87804 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.74938 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.87449 * 179.97438 * 13 12 11 31 31 H 0.96995 * 120.00247 * 246.69647 * 18 15 14 32 32 H 1.09001 * 109.47759 * 286.48871 * 19 18 15 33 33 H 1.08997 * 109.47171 * 46.49153 * 19 18 15 34 34 H 1.09004 * 109.47336 * 59.55215 * 21 20 19 35 35 H 1.08997 * 109.47744 * 179.55870 * 21 20 19 36 36 H 0.96697 * 114.00278 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.61337 * 334.56517 * 23 20 19 38 38 H 1.08995 * 113.61519 * 105.47283 * 23 20 19 39 39 H 1.09000 * 113.53762 * 270.81151 * 24 23 20 40 40 H 1.09003 * 113.74232 * 139.94060 * 24 23 20 41 41 H 1.09001 * 113.61920 * 220.08598 * 25 24 23 42 42 H 1.09002 * 113.68967 * 89.19750 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4897 2.0464 1.4001 5 1 3.5399 1.4401 -0.7000 6 1 1.4398 2.6526 -0.7001 7 6 2.0079 -1.2121 0.0005 8 1 3.0579 -1.2295 -0.2519 9 6 1.3403 -2.4137 0.3316 10 6 0.2860 -2.4052 1.2638 11 6 -0.3562 -3.5806 1.5788 12 6 0.0321 -4.7704 0.9819 13 6 1.0691 -4.7905 0.0625 14 6 1.7210 -3.6257 -0.2731 15 16 3.0332 -3.6536 -1.4486 16 8 4.0786 -2.8614 -0.9020 17 8 3.2044 -5.0127 -1.8267 18 7 2.4994 -2.8565 -2.7984 19 6 2.2291 -1.4179 -2.7405 20 6 2.0812 -0.8692 -4.1611 21 6 0.8665 -1.4403 -4.8952 22 8 0.9951 -2.8599 -4.9965 23 6 3.3803 -0.9269 -4.9821 24 6 2.9983 0.4585 -5.5341 25 6 2.1868 0.6628 -4.2439 26 1 -0.4850 -0.8342 -0.0992 27 1 -0.0173 -1.4798 1.7308 28 1 -1.1653 -3.5766 2.2942 29 1 -0.4773 -5.6884 1.2354 30 1 1.3635 -5.7230 -0.3960 31 1 2.3656 -3.3422 -3.6273 32 1 1.3071 -1.2434 -2.1859 33 1 3.0552 -0.9128 -2.2401 34 1 -0.0404 -1.1963 -4.3418 35 1 0.8096 -1.0084 -5.8944 36 1 0.2583 -3.2901 -5.4515 37 1 4.2833 -0.9198 -4.3716 38 1 3.3850 -1.7127 -5.7374 39 1 2.3843 0.4145 -6.4336 40 1 3.8431 1.1405 -5.6311 41 1 1.2293 1.1585 -4.4040 42 1 2.7616 1.1054 -3.4304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601389155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:37 Heat of formation + Delta-G solvation = -116.125934 kcal Electronic energy + Delta-G solvation = -27573.067735 eV Core-core repulsion = 23837.120090 eV Total energy + Delta-G solvation = -3735.947645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76928 -39.67515 -38.12052 -36.92321 -36.70762 -36.03122 -35.11118 -31.99398 -31.22311 -29.39816 -27.36352 -26.49736 -26.38684 -23.66826 -23.01722 -22.95920 -20.44230 -19.90642 -19.45334 -18.56729 -18.04288 -17.78902 -17.17974 -16.65207 -16.42438 -16.23286 -15.83656 -15.62321 -15.29900 -14.98695 -14.86040 -14.56620 -14.28549 -14.10691 -13.74009 -13.33917 -13.29124 -13.17705 -13.04511 -12.97943 -12.76929 -12.73312 -12.51662 -12.30908 -12.13618 -11.95844 -11.56693 -11.40507 -11.21236 -11.08643 -11.04377 -10.99554 -10.63791 -10.08532 -9.96731 -9.58996 -9.20594 -6.67352 -0.14614 0.40881 0.84495 1.49721 1.59152 1.78143 2.26423 2.37207 2.60698 2.93756 3.23191 3.39228 3.60882 3.75913 3.84699 3.95665 4.15584 4.19957 4.27856 4.32098 4.53905 4.60200 4.61638 4.70355 4.81377 4.86639 4.93571 4.98098 5.02894 5.09681 5.12903 5.17975 5.35451 5.37910 5.45847 5.50477 5.59255 5.59919 5.78225 5.85817 6.02041 6.17819 6.51594 6.59345 6.78754 7.03294 8.00007 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.007587 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.867619 B = 3689.517439 C = 4964.539458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.025 3.975 3 Si 1.082 2.918 4 H -0.268 1.268 5 H -0.255 1.255 6 H -0.253 1.253 7 C -0.543 4.543 8 H 0.105 0.895 9 C 0.146 3.854 10 C -0.230 4.230 11 C -0.056 4.056 12 C -0.255 4.255 13 C -0.006 4.006 14 C -0.793 4.793 15 S 2.719 3.281 16 O -1.004 7.004 17 O -1.015 7.015 18 N -1.094 6.094 19 C 0.150 3.850 20 C -0.104 4.104 21 C 0.108 3.892 22 O -0.584 6.584 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.129 4.129 26 H 0.291 0.709 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.424 0.576 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 3.321 -11.172 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.195 4.195 3 Si 0.899 3.101 4 H -0.193 1.193 5 H -0.179 1.179 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.123 0.877 9 C 0.141 3.859 10 C -0.250 4.250 11 C -0.075 4.075 12 C -0.275 4.275 13 C -0.026 4.026 14 C -0.886 4.886 15 S 2.815 3.185 16 O -0.994 6.994 17 O -1.006 7.006 18 N -0.859 5.859 19 C 0.024 3.976 20 C -0.106 4.106 21 C 0.030 3.970 22 O -0.393 6.393 23 C -0.167 4.167 24 C -0.160 4.160 25 C -0.168 4.168 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.022 4.789 -10.561 11.596 hybrid contribution -1.299 -2.179 0.308 2.556 sum -1.278 2.610 -10.253 10.656 Atomic orbital electron populations 1.70510 1.08411 1.33999 1.29284 1.27996 0.95577 1.06078 0.89825 0.83495 0.75908 0.71190 0.79531 1.19290 1.17915 1.17671 1.21549 1.00614 0.93133 1.41708 0.87724 1.17377 0.89863 0.91243 0.87386 1.21446 1.02952 0.97856 1.02753 1.21225 0.96994 0.92606 0.96650 1.20910 1.02993 0.98210 1.05428 1.20653 0.92522 0.95577 0.93844 1.30243 1.30055 1.01184 1.27155 1.00289 0.73980 0.71080 0.73149 1.93418 1.55814 1.70790 1.79409 1.93406 1.87201 1.36195 1.83815 1.55113 1.86099 1.17902 1.26781 1.21434 1.00770 0.78817 0.96540 1.22310 0.97061 0.97127 0.94125 1.21849 0.95174 0.80956 0.98972 1.86196 1.50694 1.20178 1.82234 1.22925 0.96018 0.98737 0.99022 1.22844 1.00234 0.96107 0.96855 1.22965 1.01780 0.92719 0.99299 0.89555 0.87936 0.85414 0.85103 0.86043 0.73613 0.92400 0.92274 0.94175 0.90685 0.75349 0.91195 0.90746 0.88359 0.90174 0.89912 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.16 12.45 21.83 0.27 -37.89 16 2 C 0.02 1.14 4.25 85.26 0.36 1.50 16 3 Si 1.08 39.96 29.96 68.60 2.06 42.01 16 4 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 7 C -0.54 -27.08 4.77 23.46 0.11 -26.97 16 8 H 0.11 5.47 4.45 -2.91 -0.01 5.45 16 9 C 0.15 7.45 5.18 -21.29 -0.11 7.34 16 10 C -0.23 -11.20 7.76 22.73 0.18 -11.03 16 11 C -0.06 -2.40 10.02 22.22 0.22 -2.18 16 12 C -0.26 -10.68 10.05 22.46 0.23 -10.45 16 13 C -0.01 -0.28 9.53 22.21 0.21 -0.07 16 14 C -0.79 -38.85 5.97 22.73 0.14 -38.71 16 15 S 2.72 125.80 5.44 -56.49 -0.31 125.50 16 16 O -1.00 -51.50 14.87 -128.00 -1.90 -53.40 16 17 O -1.02 -48.63 16.97 -128.00 -2.17 -50.80 16 18 N -1.09 -42.95 5.64 -187.50 -1.06 -44.01 16 19 C 0.15 5.72 3.68 86.38 0.32 6.04 16 20 C -0.10 -2.97 0.84 -51.65 -0.04 -3.01 16 21 C 0.11 2.57 6.29 71.98 0.45 3.03 16 22 O -0.58 -14.14 10.81 -148.98 -1.61 -15.75 16 23 C -0.13 -3.27 7.11 31.18 0.22 -3.05 16 24 C -0.12 -2.38 7.74 31.18 0.24 -2.14 16 25 C -0.13 -3.15 7.23 31.12 0.23 -2.93 16 26 H 0.29 14.45 6.23 -92.71 -0.58 13.88 16 27 H 0.10 5.08 6.65 -2.91 -0.02 5.06 16 28 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.12 5.12 7.33 -2.91 -0.02 5.10 16 31 H 0.42 15.10 6.06 -96.75 -0.59 14.52 16 32 H 0.06 2.47 5.87 -2.39 -0.01 2.46 16 33 H 0.06 2.43 6.39 -2.39 -0.02 2.42 16 34 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.33 7.30 -2.39 -0.02 1.31 16 36 H 0.40 5.90 9.12 -74.06 -0.68 5.23 16 37 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.10 1.50 7.60 -2.39 -0.02 1.48 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.79 8.10 -2.39 -0.02 1.78 16 42 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 Total: -1.00 -64.24 339.65 -1.97 -66.21 By element: Atomic # 1 Polarization: 50.76 SS G_CDS: 0.00 Total: 50.76 kcal Atomic # 6 Polarization: -85.38 SS G_CDS: 2.75 Total: -82.63 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -0.79 Total: -81.90 kcal Atomic # 8 Polarization: -114.26 SS G_CDS: -5.69 Total: -119.95 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.06 Total: 42.01 kcal Atomic # 16 Polarization: 125.80 SS G_CDS: -0.31 Total: 125.50 kcal Total: -64.24 -1.97 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601389155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.913 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds