Wall clock time and date at job start Tue Mar 31 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48491 * 109.47445 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47383 * 120.00129 * 3 2 1 6 6 H 1.48510 * 109.46988 * 239.99764 * 3 2 1 7 7 C 1.39941 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99986 * 161.90527 * 7 2 1 9 9 C 1.41402 * 120.00343 * 341.90024 * 7 2 1 10 10 C 1.40737 * 120.24163 * 324.89715 * 9 7 2 11 11 C 1.37594 * 119.74385 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.25113 * 0.02599 * 11 10 9 13 13 C 1.38614 * 120.49813 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.24886 * 359.67789 * 13 12 11 15 15 S 1.76199 * 120.12808 * 180.32084 * 14 13 12 16 16 O 1.42101 * 106.40048 * 226.10689 * 15 14 13 17 17 O 1.42101 * 106.40121 * 359.02813 * 15 14 13 18 18 N 1.65602 * 107.22097 * 112.56798 * 15 14 13 19 19 C 1.46500 * 119.99715 * 95.98761 * 18 15 14 20 20 C 1.53003 * 109.47083 * 83.64145 * 19 18 15 21 21 O 1.42903 * 109.46875 * 63.02188 * 20 19 18 22 22 C 1.46500 * 120.00017 * 275.99185 * 18 15 14 23 23 C 1.53785 * 113.61065 * 209.78464 * 22 18 15 24 24 C 1.53956 * 87.01657 * 220.04775 * 23 22 18 25 25 C 1.53783 * 87.11401 * 25.36396 * 24 23 22 26 26 H 0.97000 * 120.00154 * 174.45620 * 1 2 3 27 27 H 1.08001 * 120.12358 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87666 * 180.02562 * 11 10 9 29 29 H 1.07991 * 119.75140 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.87704 * 179.97438 * 13 12 11 31 31 H 1.09000 * 109.47106 * 203.64139 * 19 18 15 32 32 H 1.09002 * 109.47370 * 323.64232 * 19 18 15 33 33 H 1.09000 * 109.47203 * 183.01893 * 20 19 18 34 34 H 1.08995 * 109.47305 * 303.02134 * 20 19 18 35 35 H 0.96698 * 114.00081 * 179.97438 * 21 20 19 36 36 H 1.09001 * 112.84650 * 340.97479 * 22 18 15 37 37 H 1.09003 * 113.61234 * 334.56333 * 23 22 18 38 38 H 1.08997 * 113.61266 * 105.46934 * 23 22 18 39 39 H 1.09004 * 113.53780 * 270.81434 * 24 23 22 40 40 H 1.08998 * 113.74712 * 139.94184 * 24 23 22 41 41 H 1.08997 * 113.61436 * 220.09694 * 25 24 23 42 42 H 1.08999 * 113.69158 * 89.19412 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2773 2.7464 -0.0006 5 1 3.0959 1.6964 1.2124 6 1 3.0960 1.6963 -1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0478 -1.2352 -0.2900 9 6 1.3534 -2.4061 0.3815 10 6 0.3732 -2.3861 1.3913 11 6 -0.2576 -3.5540 1.7536 12 6 0.0695 -4.7476 1.1283 13 6 1.0332 -4.7790 0.1325 14 6 1.6720 -3.6217 -0.2510 15 16 2.8906 -3.6640 -1.5230 16 8 3.9929 -2.9034 -1.0481 17 8 3.0001 -5.0214 -1.9288 18 7 2.2753 -2.8368 -2.8190 19 6 2.6155 -1.4254 -3.0155 20 6 3.9610 -1.3207 -3.7364 21 8 3.8530 -1.9088 -5.0344 22 6 1.3909 -3.5162 -3.7689 23 6 1.4758 -2.9562 -5.1986 24 6 -0.0530 -3.1239 -5.2689 25 6 -0.0587 -3.0038 -3.7358 26 1 -0.4850 -0.8361 -0.0812 27 1 0.1173 -1.4575 1.8799 28 1 -1.0103 -3.5410 2.5279 29 1 -0.4304 -5.6595 1.4192 30 1 1.2804 -5.7143 -0.3476 31 1 1.8430 -0.9458 -3.6166 32 1 2.6826 -0.9295 -2.0472 33 1 4.2397 -0.2716 -3.8350 34 1 4.7231 -1.8467 -3.1616 35 1 4.6707 -1.8776 -5.5496 36 1 1.4714 -4.6022 -3.7198 37 1 1.8036 -1.9175 -5.2419 38 1 2.0190 -3.6017 -5.8888 39 1 -0.3673 -4.1026 -5.6314 40 1 -0.5619 -2.3023 -5.7731 41 1 -0.7524 -3.6877 -3.2469 42 1 -0.1513 -1.9787 -3.3771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601399760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:20 Heat of formation + Delta-G solvation = -86.542928 kcal Electronic energy + Delta-G solvation = -27898.498370 eV Core-core repulsion = 24163.833540 eV Total energy + Delta-G solvation = -3734.664830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.93409 -37.89406 -36.73904 -36.14966 -34.92277 -34.16453 -33.45611 -30.23731 -29.51593 -28.56356 -25.40763 -25.15092 -24.08976 -22.24817 -21.85260 -21.24818 -18.89133 -18.45752 -18.02376 -17.45226 -16.69419 -16.11855 -16.06506 -15.08380 -14.81551 -14.60115 -14.27815 -14.06374 -13.82576 -13.38277 -13.31964 -12.75156 -12.65914 -12.46057 -12.27098 -11.97755 -11.76306 -11.62337 -11.43306 -11.30749 -11.21794 -11.15567 -10.99792 -10.74926 -10.56110 -10.50618 -10.39640 -10.14054 -9.95642 -9.82040 -9.50875 -9.35027 -9.24445 -8.35413 -8.18526 -7.79747 -7.42861 -4.88566 1.45907 2.17623 2.59670 3.03830 3.10772 3.24639 3.79966 3.83301 4.32205 4.54728 4.67421 4.95037 5.05209 5.15345 5.23316 5.30580 5.40701 5.47403 5.63084 5.75384 5.82668 5.87107 5.99717 6.01859 6.13110 6.23095 6.26835 6.28799 6.42543 6.46326 6.52132 6.55423 6.63365 6.84573 7.03797 7.12328 7.24328 7.28619 7.40869 7.54154 7.64466 7.80710 7.86964 7.95042 8.35791 8.57378 9.81919 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.008019 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.793537 B = 3490.792829 C = 4517.136712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.042 3.958 3 Si 1.056 2.944 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.118 0.882 9 C 0.178 3.822 10 C -0.204 4.204 11 C -0.058 4.058 12 C -0.254 4.254 13 C 0.008 3.992 14 C -0.772 4.772 15 S 2.704 3.296 16 O -0.974 6.974 17 O -0.997 6.997 18 N -0.971 5.971 19 C 0.115 3.885 20 C 0.047 3.953 21 O -0.561 6.561 22 C 0.131 3.869 23 C -0.122 4.122 24 C -0.149 4.149 25 C -0.152 4.152 26 H 0.301 0.699 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.365 0.635 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 0.335 -7.951 8.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.181 4.181 3 Si 0.878 3.122 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.135 0.865 9 C 0.173 3.827 10 C -0.224 4.224 11 C -0.077 4.077 12 C -0.274 4.274 13 C -0.012 4.012 14 C -0.866 4.866 15 S 2.803 3.197 16 O -0.964 6.964 17 O -0.988 6.988 18 N -0.804 5.804 19 C -0.010 4.010 20 C -0.032 4.032 21 O -0.366 6.366 22 C 0.024 3.976 23 C -0.161 4.161 24 C -0.187 4.187 25 C -0.192 4.192 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.210 0.790 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.582 1.492 -7.672 7.975 hybrid contribution -0.169 -1.494 0.377 1.550 sum 1.413 -0.002 -7.295 7.431 Atomic orbital electron populations 1.70452 1.08053 1.34555 1.27793 1.27054 0.95651 1.04128 0.91275 0.83765 0.75845 0.73662 0.78916 1.19585 1.19498 1.19253 1.21397 1.01756 0.92783 1.41001 0.86453 1.17047 0.88154 0.90490 0.86972 1.21381 1.02997 0.97190 1.00830 1.20872 0.96608 0.93334 0.96868 1.20509 1.05152 0.97031 1.04709 1.20349 0.91814 0.95458 0.93617 1.30051 1.30143 1.01067 1.25327 1.01017 0.74193 0.71778 0.72713 1.93448 1.50924 1.71499 1.80572 1.93429 1.87184 1.35301 1.82869 1.57225 1.63125 1.20139 1.39906 1.21765 0.94462 0.82073 1.02708 1.22911 0.99444 0.96711 0.84176 1.86665 1.38205 1.83313 1.28411 1.22326 0.88821 0.96842 0.89623 1.23300 0.94171 1.03294 0.95334 1.22820 0.97720 1.01374 0.96774 1.23408 0.97449 1.02649 0.95689 0.88518 0.87253 0.88526 0.88385 0.87278 0.90234 0.86034 0.93090 0.92654 0.78960 0.87265 0.87869 0.91813 0.90728 0.91687 0.91666 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.64 12.59 55.55 0.70 -17.94 16 2 C 0.04 0.96 4.82 -17.34 -0.08 0.87 16 3 Si 1.06 19.66 29.96 -169.99 -5.09 14.57 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 7 C -0.54 -12.91 5.90 -37.74 -0.22 -13.13 16 8 H 0.12 2.84 4.58 -52.48 -0.24 2.60 16 9 C 0.18 4.37 5.14 -106.82 -0.55 3.82 16 10 C -0.20 -4.85 7.86 -38.87 -0.31 -5.15 16 11 C -0.06 -1.25 10.02 -39.66 -0.40 -1.65 16 12 C -0.25 -5.41 10.05 -39.29 -0.39 -5.80 16 13 C 0.01 0.17 9.54 -39.66 -0.38 -0.21 16 14 C -0.77 -18.22 5.97 -38.87 -0.23 -18.46 16 15 S 2.70 59.95 5.13 -107.50 -0.55 59.40 16 16 O -0.97 -23.09 13.62 -57.17 -0.78 -23.86 16 17 O -1.00 -23.20 15.76 -57.17 -0.90 -24.10 16 18 N -0.97 -18.44 2.92 -106.43 -0.31 -18.75 16 19 C 0.12 2.04 4.85 -4.04 -0.02 2.02 16 20 C 0.05 0.71 7.34 37.16 0.27 0.98 16 21 O -0.56 -7.49 9.99 -35.23 -0.35 -7.84 16 22 C 0.13 2.23 4.28 -67.12 -0.29 1.94 16 23 C -0.12 -1.77 5.65 -25.82 -0.15 -1.92 16 24 C -0.15 -1.98 8.09 -25.83 -0.21 -2.19 16 25 C -0.15 -2.45 7.65 -25.92 -0.20 -2.65 16 26 H 0.30 7.35 6.52 -40.82 -0.27 7.09 16 27 H 0.11 2.61 6.97 -52.49 -0.37 2.25 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.11 2.29 7.32 -52.49 -0.38 1.90 16 31 H 0.08 1.31 6.17 -51.93 -0.32 0.99 16 32 H 0.12 2.38 4.02 -51.93 -0.21 2.17 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.91 7.17 -51.93 -0.37 0.54 16 35 H 0.36 3.26 9.12 45.56 0.42 3.67 16 36 H 0.11 1.91 7.21 -51.93 -0.37 1.54 16 37 H 0.10 1.53 4.66 -51.93 -0.24 1.29 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.51 7.60 -51.93 -0.39 1.12 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -28.33 336.60 -9.87 -38.20 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -4.51 Total: 16.77 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: -3.15 Total: -41.51 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.39 Total: -36.69 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -2.03 Total: -55.81 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.09 Total: 14.57 kcal Atomic # 16 Polarization: 59.95 SS G_CDS: -0.55 Total: 59.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.33 -9.87 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.339 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds