Wall clock time and date at job start Tue Mar 31 2020 15:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48491 * 109.47445 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47383 * 120.00129 * 3 2 1 6 6 H 1.48510 * 109.46988 * 239.99764 * 3 2 1 7 7 C 1.39941 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99986 * 161.90527 * 7 2 1 9 9 C 1.41402 * 120.00343 * 341.90024 * 7 2 1 10 10 C 1.40737 * 120.24163 * 324.89715 * 9 7 2 11 11 C 1.37594 * 119.74385 * 179.97438 * 10 9 7 12 12 C 1.38657 * 120.25113 * 0.02599 * 11 10 9 13 13 C 1.38614 * 120.49813 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.24886 * 359.67789 * 13 12 11 15 15 S 1.76199 * 120.12808 * 180.32084 * 14 13 12 16 16 O 1.42101 * 106.40048 * 226.10689 * 15 14 13 17 17 O 1.42101 * 106.40121 * 359.02813 * 15 14 13 18 18 N 1.65602 * 107.22097 * 112.56798 * 15 14 13 19 19 C 1.46500 * 119.99715 * 95.98761 * 18 15 14 20 20 C 1.53003 * 109.47083 * 83.64145 * 19 18 15 21 21 O 1.42903 * 109.46875 * 63.02188 * 20 19 18 22 22 C 1.46500 * 120.00017 * 275.99185 * 18 15 14 23 23 C 1.53785 * 113.61065 * 209.78464 * 22 18 15 24 24 C 1.53956 * 87.01657 * 220.04775 * 23 22 18 25 25 C 1.53783 * 87.11401 * 25.36396 * 24 23 22 26 26 H 0.97000 * 120.00154 * 174.45620 * 1 2 3 27 27 H 1.08001 * 120.12358 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87666 * 180.02562 * 11 10 9 29 29 H 1.07991 * 119.75140 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.87704 * 179.97438 * 13 12 11 31 31 H 1.09000 * 109.47106 * 203.64139 * 19 18 15 32 32 H 1.09002 * 109.47370 * 323.64232 * 19 18 15 33 33 H 1.09000 * 109.47203 * 183.01893 * 20 19 18 34 34 H 1.08995 * 109.47305 * 303.02134 * 20 19 18 35 35 H 0.96698 * 114.00081 * 179.97438 * 21 20 19 36 36 H 1.09001 * 112.84650 * 340.97479 * 22 18 15 37 37 H 1.09003 * 113.61234 * 334.56333 * 23 22 18 38 38 H 1.08997 * 113.61266 * 105.46934 * 23 22 18 39 39 H 1.09004 * 113.53780 * 270.81434 * 24 23 22 40 40 H 1.08998 * 113.74712 * 139.94184 * 24 23 22 41 41 H 1.08997 * 113.61436 * 220.09694 * 25 24 23 42 42 H 1.08999 * 113.69158 * 89.19412 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2773 2.7464 -0.0006 5 1 3.0959 1.6964 1.2124 6 1 3.0960 1.6963 -1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0478 -1.2352 -0.2900 9 6 1.3534 -2.4061 0.3815 10 6 0.3732 -2.3861 1.3913 11 6 -0.2576 -3.5540 1.7536 12 6 0.0695 -4.7476 1.1283 13 6 1.0332 -4.7790 0.1325 14 6 1.6720 -3.6217 -0.2510 15 16 2.8906 -3.6640 -1.5230 16 8 3.9929 -2.9034 -1.0481 17 8 3.0001 -5.0214 -1.9288 18 7 2.2753 -2.8368 -2.8190 19 6 2.6155 -1.4254 -3.0155 20 6 3.9610 -1.3207 -3.7364 21 8 3.8530 -1.9088 -5.0344 22 6 1.3909 -3.5162 -3.7689 23 6 1.4758 -2.9562 -5.1986 24 6 -0.0530 -3.1239 -5.2689 25 6 -0.0587 -3.0038 -3.7358 26 1 -0.4850 -0.8361 -0.0812 27 1 0.1173 -1.4575 1.8799 28 1 -1.0103 -3.5410 2.5279 29 1 -0.4304 -5.6595 1.4192 30 1 1.2804 -5.7143 -0.3476 31 1 1.8430 -0.9458 -3.6166 32 1 2.6826 -0.9295 -2.0472 33 1 4.2397 -0.2716 -3.8350 34 1 4.7231 -1.8467 -3.1616 35 1 4.6707 -1.8776 -5.5496 36 1 1.4714 -4.6022 -3.7198 37 1 1.8036 -1.9175 -5.2419 38 1 2.0190 -3.6017 -5.8888 39 1 -0.3673 -4.1026 -5.6314 40 1 -0.5619 -2.3023 -5.7731 41 1 -0.7524 -3.6877 -3.2469 42 1 -0.1513 -1.9787 -3.3771 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601399760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:19 Heat of formation + Delta-G solvation = -105.078695 kcal Electronic energy + Delta-G solvation = -27899.302141 eV Core-core repulsion = 24163.833540 eV Total energy + Delta-G solvation = -3735.468601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21977 -39.64886 -38.32313 -37.48271 -36.72593 -35.88584 -34.83126 -31.99627 -31.28591 -29.87626 -27.17347 -26.38055 -25.35092 -23.60040 -23.57047 -23.00364 -20.33474 -20.09849 -19.49165 -19.00380 -17.98865 -17.77013 -17.52223 -16.71730 -16.46551 -16.00149 -15.73151 -15.54380 -15.38268 -15.03887 -14.63924 -14.50640 -14.13320 -13.98296 -13.66955 -13.41029 -13.25662 -13.06624 -13.05849 -12.97867 -12.86962 -12.77408 -12.60004 -12.30296 -12.10224 -11.92755 -11.64224 -11.59017 -11.30210 -11.14595 -11.05172 -10.98757 -10.67834 -10.06104 -9.68640 -9.59388 -9.22514 -6.70072 -0.24063 0.39154 0.83419 1.52155 1.60935 1.80084 2.19968 2.28848 2.60295 2.93186 3.29819 3.46773 3.58526 3.79206 3.89406 4.01488 4.07430 4.15347 4.19489 4.30162 4.38586 4.51258 4.55672 4.60218 4.77175 4.87212 4.89779 5.02538 5.05831 5.09381 5.13768 5.15664 5.31951 5.35254 5.37764 5.48383 5.56304 5.74274 5.77068 5.82603 5.94042 6.00892 6.16684 6.57489 6.79316 7.02255 8.00605 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.008019 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.793537 B = 3490.792829 C = 4517.136712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.020 3.980 3 Si 1.088 2.912 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.239 1.239 7 C -0.554 4.554 8 H 0.110 0.890 9 C 0.155 3.845 10 C -0.227 4.227 11 C -0.056 4.056 12 C -0.252 4.252 13 C -0.009 4.009 14 C -0.790 4.790 15 S 2.713 3.287 16 O -0.995 6.995 17 O -1.013 7.013 18 N -0.965 5.965 19 C 0.107 3.893 20 C 0.054 3.946 21 O -0.566 6.566 22 C 0.114 3.886 23 C -0.110 4.110 24 C -0.131 4.131 25 C -0.156 4.156 26 H 0.288 0.712 27 H 0.099 0.901 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.387 0.613 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 0.619 -9.456 9.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.199 4.199 3 Si 0.905 3.095 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.163 1.163 7 C -0.581 4.581 8 H 0.128 0.872 9 C 0.151 3.849 10 C -0.247 4.247 11 C -0.075 4.075 12 C -0.272 4.272 13 C -0.029 4.029 14 C -0.883 4.883 15 S 2.812 3.188 16 O -0.985 6.985 17 O -1.003 7.003 18 N -0.800 5.800 19 C -0.017 4.017 20 C -0.025 4.025 21 O -0.374 6.374 22 C 0.007 3.993 23 C -0.149 4.149 24 C -0.169 4.169 25 C -0.196 4.196 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.236 0.764 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.460 1.750 -9.181 9.460 hybrid contribution -0.163 -1.693 0.842 1.898 sum 1.297 0.057 -8.339 8.439 Atomic orbital electron populations 1.70546 1.08636 1.33648 1.29508 1.28130 0.95557 1.06390 0.89813 0.83412 0.75394 0.70536 0.80192 1.19299 1.19334 1.16266 1.21423 1.01440 0.93380 1.41878 0.87243 1.17338 0.88858 0.91196 0.87549 1.21428 1.04078 0.97731 1.01444 1.21226 0.96518 0.92653 0.97103 1.20914 1.04427 0.98200 1.03618 1.20659 0.92334 0.95627 0.94272 1.30368 1.30479 1.01291 1.26180 1.00614 0.73838 0.71495 0.72895 1.93408 1.52031 1.71786 1.81286 1.93395 1.87431 1.36387 1.83110 1.57016 1.63407 1.20646 1.38933 1.21845 0.96445 0.81075 1.02367 1.22695 0.97050 0.98151 0.84619 1.86593 1.39971 1.83231 1.27566 1.22648 0.89086 0.96604 0.90915 1.23235 0.95237 1.03198 0.93208 1.22786 0.96844 1.03002 0.94258 1.23383 0.96678 1.01364 0.98177 0.89931 0.88285 0.85440 0.85113 0.86213 0.89107 0.88042 0.90395 0.94448 0.76420 0.87987 0.87893 0.90801 0.88987 0.90079 0.92370 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.70 12.59 21.82 0.27 -38.42 16 2 C 0.02 0.92 4.82 85.26 0.41 1.33 16 3 Si 1.09 38.99 29.96 68.60 2.06 41.05 16 4 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.24 -7.45 7.11 99.48 0.71 -6.74 16 7 C -0.55 -27.01 5.90 23.46 0.14 -26.87 16 8 H 0.11 5.44 4.58 -2.91 -0.01 5.43 16 9 C 0.16 7.80 5.14 -21.29 -0.11 7.69 16 10 C -0.23 -10.96 7.86 22.73 0.18 -10.79 16 11 C -0.06 -2.40 10.02 22.22 0.22 -2.17 16 12 C -0.25 -10.42 10.05 22.46 0.23 -10.19 16 13 C -0.01 -0.41 9.54 22.22 0.21 -0.20 16 14 C -0.79 -38.01 5.97 22.73 0.14 -37.88 16 15 S 2.71 122.30 5.13 -56.49 -0.29 122.01 16 16 O -0.99 -48.23 13.62 -128.00 -1.74 -49.97 16 17 O -1.01 -47.60 15.76 -128.00 -2.02 -49.62 16 18 N -0.96 -36.65 2.92 -490.65 -1.43 -38.08 16 19 C 0.11 3.75 4.85 86.38 0.42 4.17 16 20 C 0.05 1.57 7.34 71.98 0.53 2.09 16 21 O -0.57 -13.72 9.99 -148.98 -1.49 -15.21 16 22 C 0.11 3.80 4.28 45.52 0.19 4.00 16 23 C -0.11 -2.94 5.65 31.18 0.18 -2.76 16 24 C -0.13 -3.15 8.09 31.18 0.25 -2.90 16 25 C -0.16 -4.93 7.65 31.12 0.24 -4.69 16 26 H 0.29 14.53 6.52 -92.71 -0.60 13.93 16 27 H 0.10 4.88 6.97 -2.91 -0.02 4.86 16 28 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.13 4.49 8.06 -2.92 -0.02 4.46 16 30 H 0.12 5.01 7.32 -2.91 -0.02 4.98 16 31 H 0.09 2.91 6.17 -2.39 -0.01 2.90 16 32 H 0.10 4.00 4.02 -2.39 -0.01 3.99 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.21 7.17 -2.39 -0.02 1.19 16 35 H 0.39 5.78 9.12 -74.06 -0.68 5.11 16 36 H 0.10 3.54 7.21 -2.39 -0.02 3.52 16 37 H 0.10 2.80 4.66 -2.39 -0.01 2.79 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.47 7.60 -2.39 -0.02 2.45 16 Total: -1.00 -61.63 336.60 -0.86 -62.49 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: 0.55 Total: 44.93 kcal Atomic # 6 Polarization: -82.39 SS G_CDS: 3.22 Total: -79.17 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.16 Total: -76.50 kcal Atomic # 8 Polarization: -109.56 SS G_CDS: -5.25 Total: -114.81 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.06 Total: 41.05 kcal Atomic # 16 Polarization: 122.30 SS G_CDS: -0.29 Total: 122.01 kcal Total: -61.63 -0.86 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.586 kcal (2) G-P(sol) polarization free energy of solvation -61.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds