Wall clock time and date at job start Tue Mar 31 2020 14:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86793 * 119.99822 * 2 1 4 4 H 1.48502 * 109.46858 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47305 * 29.99931 * 3 2 1 6 6 H 1.48502 * 109.46952 * 150.00169 * 3 2 1 7 7 C 1.39945 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99302 * 166.60305 * 7 2 1 9 9 C 1.41391 * 120.00660 * 346.59843 * 7 2 1 10 10 C 1.40729 * 120.24270 * 329.00164 * 9 7 2 11 11 C 1.37601 * 119.74736 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24634 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.49931 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.25088 * 359.97438 * 13 12 11 15 15 S 1.76188 * 120.12822 * 179.97438 * 14 13 12 16 16 O 1.42100 * 106.40457 * 358.97065 * 15 14 13 17 17 O 1.42095 * 106.40329 * 131.88811 * 15 14 13 18 18 N 1.65598 * 107.21849 * 245.42923 * 15 14 13 19 19 C 1.46492 * 120.00239 * 65.63860 * 18 15 14 20 20 C 1.53005 * 109.47425 * 163.14290 * 19 18 15 21 21 H 1.09004 * 110.43147 * 307.54093 * 20 19 18 22 22 C 1.54887 * 110.48499 * 70.22541 * 20 19 18 23 23 C 1.54886 * 102.74776 * 156.62185 * 22 20 19 24 24 C 1.54261 * 104.19842 * 322.05706 * 23 22 20 25 25 H 1.09004 * 110.03067 * 264.32722 * 24 23 22 26 26 O 1.42895 * 110.03580 * 142.89588 * 24 23 22 27 27 C 1.53879 * 106.59734 * 23.61117 * 24 23 22 28 28 H 0.96995 * 120.00498 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.13035 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.87841 * 180.29294 * 11 10 9 31 31 H 1.07999 * 119.74731 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.86934 * 180.02562 * 13 12 11 33 33 H 0.97009 * 119.99828 * 245.63979 * 18 15 14 34 34 H 1.08999 * 109.47490 * 283.14651 * 19 18 15 35 35 H 1.09007 * 109.47462 * 43.14608 * 19 18 15 36 36 H 1.08997 * 110.75567 * 274.93651 * 22 20 19 37 37 H 1.08998 * 110.75571 * 38.30825 * 22 20 19 38 38 H 1.09005 * 110.48492 * 203.37945 * 23 22 20 39 39 H 1.08997 * 110.48673 * 80.73687 * 23 22 20 40 40 H 0.96695 * 114.00496 * 62.83027 * 26 24 23 41 41 H 1.09002 * 110.02946 * 240.71997 * 27 24 23 42 42 H 1.08996 * 110.07296 * 119.31150 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5397 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0659 -1.2248 -0.2162 9 6 1.3299 -2.4197 0.2849 10 6 0.2254 -2.4242 1.1570 11 6 -0.4272 -3.6053 1.4261 12 6 -0.0001 -4.7881 0.8421 13 6 1.0865 -4.7955 -0.0185 14 6 1.7538 -3.6257 -0.3029 15 16 3.1350 -3.6390 -1.3966 16 8 3.3208 -4.9911 -1.7922 17 8 2.9248 -2.5807 -2.3213 18 7 4.4688 -3.2246 -0.5069 19 6 4.9430 -4.1111 0.5585 20 6 6.3790 -3.7375 0.9317 21 1 7.0084 -3.7099 0.0421 22 6 6.4112 -2.3734 1.6646 23 6 7.7333 -2.4481 2.4679 24 6 7.8068 -3.9148 2.9401 25 1 7.4097 -4.0018 3.9515 26 8 9.1596 -4.3736 2.9037 27 6 6.9457 -4.7347 1.9633 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1092 -1.5039 1.6127 30 1 -1.2780 -3.6104 2.0914 31 1 -0.5186 -5.7104 1.0586 32 1 1.4103 -5.7226 -0.4681 33 1 4.9361 -2.3947 -0.6913 34 1 4.3009 -4.0043 1.4328 35 1 4.9150 -5.1440 0.2112 36 1 6.4395 -1.5512 0.9495 37 1 5.5571 -2.2747 2.3346 38 1 7.6986 -1.7732 3.3233 39 1 8.5827 -2.2104 1.8275 40 1 9.7533 -3.8955 3.4987 41 1 6.1307 -5.2195 2.5006 42 1 7.5590 -5.4830 1.4614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601401533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:44 Heat of formation + Delta-G solvation = -127.994021 kcal Electronic energy + Delta-G solvation = -26230.400076 eV Core-core repulsion = 22493.937792 eV Total energy + Delta-G solvation = -3736.462284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.07298 -37.59962 -36.28087 -36.01162 -34.81155 -33.91715 -33.59236 -30.23776 -29.59939 -29.25705 -27.86422 -25.54243 -23.95870 -21.66997 -21.15964 -20.79006 -19.99220 -18.50005 -17.75686 -17.69491 -16.75632 -16.29551 -15.72437 -15.44636 -15.31481 -14.42646 -14.34278 -14.19119 -13.72003 -13.68249 -13.29726 -13.17066 -12.77885 -12.73370 -12.59498 -11.91834 -11.68250 -11.54798 -11.38354 -11.28397 -11.17674 -11.09852 -11.00547 -10.95077 -10.78690 -10.75733 -10.64745 -10.56697 -10.45345 -9.99976 -9.89544 -9.46262 -9.40859 -8.75872 -8.04193 -7.60450 -7.04419 -4.75876 1.55332 2.33159 2.71957 2.95550 2.98339 3.10066 3.76645 3.90381 4.12600 4.40234 4.48880 4.52348 4.76007 4.77418 5.14469 5.24993 5.30739 5.38736 5.44847 5.53844 5.62281 5.67677 5.78061 5.88393 5.92691 6.00073 6.03057 6.12631 6.17315 6.22245 6.35231 6.39976 6.48999 6.78121 6.91787 7.06989 7.29913 7.47439 7.48885 7.54608 7.66466 7.78563 7.88418 8.26676 8.50171 8.63159 9.91031 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.005007 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.032371 B = 5591.322364 C = 6627.851869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.083 3.917 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.450 4.450 8 H 0.087 0.913 9 C 0.190 3.810 10 C -0.157 4.157 11 C -0.076 4.076 12 C -0.250 4.250 13 C -0.003 4.003 14 C -0.773 4.773 15 S 2.701 3.299 16 O -0.999 6.999 17 O -0.964 6.964 18 N -1.121 6.121 19 C 0.130 3.870 20 C -0.096 4.096 21 H 0.083 0.917 22 C -0.121 4.121 23 C -0.158 4.158 24 C 0.099 3.901 25 H 0.058 0.942 26 O -0.569 6.569 27 C -0.114 4.114 28 H 0.287 0.713 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.374 0.626 41 H 0.078 0.922 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 -1.592 7.177 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.478 4.478 8 H 0.105 0.895 9 C 0.186 3.814 10 C -0.177 4.177 11 C -0.095 4.095 12 C -0.270 4.270 13 C -0.023 4.023 14 C -0.869 4.869 15 S 2.798 3.202 16 O -0.989 6.989 17 O -0.954 6.954 18 N -0.878 5.878 19 C 0.004 3.996 20 C -0.116 4.116 21 H 0.102 0.898 22 C -0.158 4.158 23 C -0.196 4.196 24 C 0.040 3.960 25 H 0.076 0.924 26 O -0.374 6.374 27 C -0.152 4.152 28 H 0.098 0.902 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.244 0.756 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.221 0.779 41 H 0.097 0.903 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.795 -2.231 5.837 12.474 hybrid contribution 0.121 1.656 1.068 1.974 sum 10.916 -0.575 6.905 12.930 Atomic orbital electron populations 1.69782 1.07777 1.30156 1.32251 1.25911 0.94828 1.01701 0.91439 0.86224 0.80562 0.79772 0.79920 1.18698 1.19838 1.17974 1.19785 0.97165 0.90956 1.39915 0.89498 1.16979 0.89519 0.89708 0.85242 1.21395 0.99014 0.96587 1.00699 1.20892 0.97375 0.93524 0.97676 1.20493 1.02457 0.97009 1.07045 1.20272 0.93426 0.95174 0.93419 1.29928 1.26312 1.00858 1.29754 1.01066 0.73023 0.72404 0.73701 1.93444 1.86406 1.37354 1.81709 1.93545 1.85119 1.56322 1.60457 1.55648 1.47599 1.33120 1.51441 1.21195 0.94161 0.93672 0.90593 1.22182 0.95918 0.95083 0.98425 0.89837 1.22548 0.97093 0.97130 0.99051 1.23114 0.99284 0.96715 1.00459 1.22512 0.82223 0.92869 0.98373 0.92370 1.86554 1.19843 1.63160 1.67840 1.22139 0.98430 0.98094 0.96564 0.90161 0.86336 0.88826 0.88719 0.87406 0.75629 0.91565 0.90663 0.90964 0.90329 0.91512 0.90744 0.77912 0.90299 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.05 11.15 55.55 0.62 -18.43 16 2 C 0.08 1.96 5.19 -17.34 -0.09 1.87 16 3 Si 0.91 17.70 29.58 -169.99 -5.03 12.67 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 7 C -0.45 -11.05 7.54 -37.74 -0.28 -11.34 16 8 H 0.09 1.97 5.88 -52.48 -0.31 1.67 16 9 C 0.19 4.76 5.51 -106.83 -0.59 4.17 16 10 C -0.16 -3.82 8.65 -38.87 -0.34 -4.16 16 11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.07 16 12 C -0.25 -5.40 10.05 -39.29 -0.39 -5.79 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.77 -18.27 5.95 -38.87 -0.23 -18.50 16 15 S 2.70 58.64 4.97 -107.50 -0.53 58.10 16 16 O -1.00 -22.68 16.39 -57.18 -0.94 -23.62 16 17 O -0.96 -23.96 16.58 -57.18 -0.95 -24.91 16 18 N -1.12 -19.06 5.08 -10.61 -0.05 -19.12 16 19 C 0.13 1.89 5.53 -4.04 -0.02 1.87 16 20 C -0.10 -1.14 2.96 -88.96 -0.26 -1.40 16 21 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 22 C -0.12 -1.36 6.00 -24.74 -0.15 -1.51 16 23 C -0.16 -1.49 6.55 -25.08 -0.16 -1.66 16 24 C 0.10 0.97 4.26 -25.61 -0.11 0.86 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 O -0.57 -5.64 13.22 -35.23 -0.47 -6.10 16 27 C -0.11 -1.24 6.18 -25.61 -0.16 -1.40 16 28 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 29 H 0.12 2.90 6.50 -52.48 -0.34 2.56 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 2.25 7.32 -52.49 -0.38 1.86 16 33 H 0.41 6.26 8.10 -34.47 -0.28 5.98 16 34 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 35 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 36 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.08 0.93 7.97 -51.93 -0.41 0.52 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.37 2.11 9.11 45.56 0.42 2.52 16 41 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 42 H 0.08 0.90 7.96 -51.93 -0.41 0.48 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -31.32 353.61 -10.62 -41.95 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -5.04 Total: 13.63 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: -3.57 Total: -39.50 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.57 Total: -37.55 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -2.35 Total: -54.63 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 58.64 SS G_CDS: -0.53 Total: 58.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.32 -10.62 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.048 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds