Wall clock time and date at job start Tue Mar 31 2020 14:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86793 * 119.99822 * 2 1 4 4 H 1.48502 * 109.46858 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47305 * 29.99931 * 3 2 1 6 6 H 1.48502 * 109.46952 * 150.00169 * 3 2 1 7 7 C 1.39945 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99302 * 166.60305 * 7 2 1 9 9 C 1.41391 * 120.00660 * 346.59843 * 7 2 1 10 10 C 1.40729 * 120.24270 * 329.00164 * 9 7 2 11 11 C 1.37601 * 119.74736 * 179.97438 * 10 9 7 12 12 C 1.38660 * 120.24634 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.49931 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.25088 * 359.97438 * 13 12 11 15 15 S 1.76188 * 120.12822 * 179.97438 * 14 13 12 16 16 O 1.42100 * 106.40457 * 358.97065 * 15 14 13 17 17 O 1.42095 * 106.40329 * 131.88811 * 15 14 13 18 18 N 1.65598 * 107.21849 * 245.42923 * 15 14 13 19 19 C 1.46492 * 120.00239 * 65.63860 * 18 15 14 20 20 C 1.53005 * 109.47425 * 163.14290 * 19 18 15 21 21 H 1.09004 * 110.43147 * 307.54093 * 20 19 18 22 22 C 1.54887 * 110.48499 * 70.22541 * 20 19 18 23 23 C 1.54886 * 102.74776 * 156.62185 * 22 20 19 24 24 C 1.54261 * 104.19842 * 322.05706 * 23 22 20 25 25 H 1.09004 * 110.03067 * 264.32722 * 24 23 22 26 26 O 1.42895 * 110.03580 * 142.89588 * 24 23 22 27 27 C 1.53879 * 106.59734 * 23.61117 * 24 23 22 28 28 H 0.96995 * 120.00498 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.13035 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.87841 * 180.29294 * 11 10 9 31 31 H 1.07999 * 119.74731 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.86934 * 180.02562 * 13 12 11 33 33 H 0.97009 * 119.99828 * 245.63979 * 18 15 14 34 34 H 1.08999 * 109.47490 * 283.14651 * 19 18 15 35 35 H 1.09007 * 109.47462 * 43.14608 * 19 18 15 36 36 H 1.08997 * 110.75567 * 274.93651 * 22 20 19 37 37 H 1.08998 * 110.75571 * 38.30825 * 22 20 19 38 38 H 1.09005 * 110.48492 * 203.37945 * 23 22 20 39 39 H 1.08997 * 110.48673 * 80.73687 * 23 22 20 40 40 H 0.96695 * 114.00496 * 62.83027 * 26 24 23 41 41 H 1.09002 * 110.02946 * 240.71997 * 27 24 23 42 42 H 1.08996 * 110.07296 * 119.31150 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5397 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0659 -1.2248 -0.2162 9 6 1.3299 -2.4197 0.2849 10 6 0.2254 -2.4242 1.1570 11 6 -0.4272 -3.6053 1.4261 12 6 -0.0001 -4.7881 0.8421 13 6 1.0865 -4.7955 -0.0185 14 6 1.7538 -3.6257 -0.3029 15 16 3.1350 -3.6390 -1.3966 16 8 3.3208 -4.9911 -1.7922 17 8 2.9248 -2.5807 -2.3213 18 7 4.4688 -3.2246 -0.5069 19 6 4.9430 -4.1111 0.5585 20 6 6.3790 -3.7375 0.9317 21 1 7.0084 -3.7099 0.0421 22 6 6.4112 -2.3734 1.6646 23 6 7.7333 -2.4481 2.4679 24 6 7.8068 -3.9148 2.9401 25 1 7.4097 -4.0018 3.9515 26 8 9.1596 -4.3736 2.9037 27 6 6.9457 -4.7347 1.9633 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1092 -1.5039 1.6127 30 1 -1.2780 -3.6104 2.0914 31 1 -0.5186 -5.7104 1.0586 32 1 1.4103 -5.7226 -0.4681 33 1 4.9361 -2.3947 -0.6913 34 1 4.3009 -4.0043 1.4328 35 1 4.9150 -5.1440 0.2112 36 1 6.4395 -1.5512 0.9495 37 1 5.5571 -2.2747 2.3346 38 1 7.6986 -1.7732 3.3233 39 1 8.5827 -2.2104 1.8275 40 1 9.7533 -3.8955 3.4987 41 1 6.1307 -5.2195 2.5006 42 1 7.5590 -5.4830 1.4614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601401533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:44 Heat of formation + Delta-G solvation = -150.499137 kcal Electronic energy + Delta-G solvation = -26231.375971 eV Core-core repulsion = 22493.937792 eV Total energy + Delta-G solvation = -3737.438179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.93163 -39.36574 -38.03133 -37.04549 -36.65243 -35.64819 -34.75024 -32.01356 -31.37381 -30.20659 -28.77945 -27.33049 -25.05116 -23.43499 -22.93887 -21.60567 -20.98815 -20.09441 -19.47952 -18.53693 -18.40166 -17.86777 -17.28014 -16.96680 -16.36119 -16.01299 -15.92732 -15.14257 -15.02740 -14.95335 -14.75214 -14.57275 -14.44679 -13.85213 -13.74451 -13.55363 -13.26236 -12.98827 -12.94191 -12.85782 -12.83305 -12.77419 -12.48628 -12.31234 -12.14254 -11.93728 -11.67112 -11.62975 -11.55967 -11.51150 -11.17340 -11.11935 -10.72853 -10.22206 -9.82701 -9.41220 -8.79218 -6.59019 -0.14822 0.53993 0.97876 1.37269 1.48681 1.53063 2.16731 2.36886 2.65042 3.00965 3.37897 3.48013 3.60517 3.69427 3.80977 3.97623 4.27847 4.33941 4.38571 4.47399 4.50209 4.57247 4.61058 4.72201 4.78886 4.81960 4.92833 4.95865 5.02003 5.11805 5.13834 5.14006 5.30263 5.35602 5.36339 5.50161 5.53223 5.71473 5.81640 6.00185 6.09590 6.24995 6.47857 6.69794 6.83874 6.96962 8.19263 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.005007 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.032371 B = 5591.322364 C = 6627.851869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.261 1.261 6 H -0.240 1.240 7 C -0.477 4.477 8 H 0.095 0.905 9 C 0.166 3.834 10 C -0.183 4.183 11 C -0.075 4.075 12 C -0.249 4.249 13 C -0.017 4.017 14 C -0.790 4.790 15 S 2.719 3.281 16 O -1.011 7.011 17 O -1.000 7.000 18 N -1.108 6.108 19 C 0.125 3.875 20 C -0.090 4.090 21 H 0.085 0.915 22 C -0.125 4.125 23 C -0.149 4.149 24 C 0.101 3.899 25 H 0.070 0.930 26 O -0.584 6.584 27 C -0.116 4.116 28 H 0.294 0.706 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.420 0.580 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.393 0.607 41 H 0.083 0.917 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.587 -1.536 8.398 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.162 1.162 7 C -0.505 4.505 8 H 0.113 0.887 9 C 0.162 3.838 10 C -0.203 4.203 11 C -0.094 4.094 12 C -0.269 4.269 13 C -0.036 4.036 14 C -0.884 4.884 15 S 2.816 3.184 16 O -1.001 7.001 17 O -0.990 6.990 18 N -0.869 5.869 19 C -0.001 4.001 20 C -0.110 4.110 21 H 0.103 0.897 22 C -0.162 4.162 23 C -0.187 4.187 24 C 0.042 3.958 25 H 0.088 0.912 26 O -0.393 6.393 27 C -0.154 4.154 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.242 0.758 41 H 0.102 0.898 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.053 -2.182 7.081 14.148 hybrid contribution -0.285 1.505 0.704 1.685 sum 11.768 -0.677 7.785 14.126 Atomic orbital electron populations 1.69827 1.09116 1.31374 1.33167 1.26785 0.95571 1.04770 0.90642 0.85337 0.80120 0.75724 0.79664 1.19351 1.18546 1.16218 1.20093 0.97793 0.91617 1.41020 0.88690 1.17289 0.90209 0.90508 0.85817 1.21456 1.00028 0.97163 1.01690 1.21240 0.97664 0.92946 0.97503 1.20895 1.01934 0.98123 1.05992 1.20592 0.93796 0.95435 0.93816 1.30204 1.27505 1.00979 1.29693 1.00345 0.73207 0.71582 0.73295 1.93419 1.86669 1.37899 1.82098 1.93490 1.85950 1.57399 1.62170 1.55251 1.45992 1.33983 1.51672 1.21414 0.95919 0.93141 0.89591 1.22121 0.93900 0.96004 0.98972 0.89670 1.22567 0.98005 0.96540 0.99130 1.23057 0.98051 0.96904 1.00679 1.22468 0.82220 0.92546 0.98537 0.91169 1.86508 1.20141 1.63854 1.68762 1.22154 0.98808 0.97882 0.96591 0.89484 0.87380 0.85967 0.85481 0.86021 0.74476 0.91678 0.90757 0.91070 0.91082 0.90059 0.90558 0.75772 0.89837 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.49 11.15 21.83 0.24 -40.24 16 2 C 0.04 1.92 5.19 85.26 0.44 2.37 16 3 Si 0.97 35.89 29.58 68.60 2.03 37.92 16 4 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 7 C -0.48 -23.76 7.54 23.46 0.18 -23.58 16 8 H 0.10 4.36 5.88 -2.91 -0.02 4.34 16 9 C 0.17 8.44 5.51 -21.29 -0.12 8.33 16 10 C -0.18 -9.03 8.65 22.73 0.20 -8.83 16 11 C -0.07 -3.24 10.02 22.22 0.22 -3.02 16 12 C -0.25 -10.38 10.05 22.46 0.23 -10.15 16 13 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 14 C -0.79 -37.53 5.95 22.73 0.14 -37.40 16 15 S 2.72 118.68 4.97 -56.49 -0.28 118.39 16 16 O -1.01 -45.70 16.39 -128.00 -2.10 -47.80 16 17 O -1.00 -50.47 16.58 -128.00 -2.12 -52.59 16 18 N -1.11 -37.36 5.08 -187.49 -0.95 -38.31 16 19 C 0.13 3.55 5.53 86.38 0.48 4.03 16 20 C -0.09 -2.02 2.96 -9.72 -0.03 -2.05 16 21 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 22 C -0.12 -2.61 6.00 31.88 0.19 -2.42 16 23 C -0.15 -2.46 6.55 31.67 0.21 -2.26 16 24 C 0.10 1.74 4.26 31.32 0.13 1.87 16 25 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 26 O -0.58 -10.23 13.22 -148.98 -1.97 -12.20 16 27 C -0.12 -2.34 6.18 31.32 0.19 -2.14 16 28 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 29 H 0.11 5.44 6.50 -2.91 -0.02 5.42 16 30 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 32 H 0.12 4.95 7.32 -2.91 -0.02 4.93 16 33 H 0.42 12.63 8.10 -96.74 -0.78 11.84 16 34 H 0.06 1.87 8.02 -2.39 -0.02 1.85 16 35 H 0.07 2.12 7.70 -2.38 -0.02 2.10 16 36 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 37 H 0.07 1.60 7.97 -2.39 -0.02 1.58 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 40 H 0.39 3.41 9.11 -74.06 -0.67 2.74 16 41 H 0.08 1.58 7.84 -2.39 -0.02 1.56 16 42 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 Total: -1.00 -66.95 353.61 -2.88 -69.83 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.40 Total: 40.79 kcal Atomic # 6 Polarization: -78.46 SS G_CDS: 2.67 Total: -75.79 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -0.71 Total: -78.56 kcal Atomic # 8 Polarization: -106.40 SS G_CDS: -6.19 Total: -112.59 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Atomic # 16 Polarization: 118.68 SS G_CDS: -0.28 Total: 118.39 kcal Total: -66.95 -2.88 -69.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.669 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds