Wall clock time and date at job start Tue Mar 31 2020 14:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99602 * 2 1 4 4 H 1.48506 * 109.47131 * 268.97804 * 3 2 1 5 5 H 1.48493 * 109.47391 * 28.97500 * 3 2 1 6 6 H 1.48498 * 109.47343 * 148.97963 * 3 2 1 7 7 C 1.39942 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00111 * 346.22451 * 7 2 1 9 9 C 1.41399 * 119.99768 * 166.22976 * 7 2 1 10 10 C 1.40734 * 120.23919 * 328.66679 * 9 7 2 11 11 C 1.37605 * 119.73853 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24904 * 359.97438 * 11 10 9 13 13 C 1.38610 * 120.50301 * 0.02562 * 12 11 10 14 14 C 1.37633 * 120.25035 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.13186 * 179.97438 * 14 13 12 16 16 O 1.42097 * 106.40518 * 224.66944 * 15 14 13 17 17 O 1.42105 * 106.40054 * 357.58769 * 15 14 13 18 18 N 1.65605 * 107.21633 * 111.12465 * 15 14 13 19 19 C 1.46498 * 119.99642 * 66.72126 * 18 15 14 20 20 C 1.53005 * 109.46936 * 163.96043 * 19 18 15 21 21 H 1.09004 * 110.43128 * 307.54333 * 20 19 18 22 22 C 1.54884 * 110.48568 * 70.22210 * 20 19 18 23 23 C 1.54896 * 102.74815 * 156.62301 * 22 20 19 24 24 C 1.54262 * 104.19166 * 322.05685 * 23 22 20 25 25 H 1.08997 * 110.07404 * 142.92105 * 24 23 22 26 26 O 1.42904 * 110.03251 * 264.32450 * 24 23 22 27 27 C 1.53871 * 106.60360 * 23.61103 * 24 23 22 28 28 H 0.96998 * 120.00564 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.13191 * 0.03028 * 10 9 7 30 30 H 1.07998 * 119.87236 * 180.25380 * 11 10 9 31 31 H 1.08007 * 119.74637 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.87499 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00115 * 246.71684 * 18 15 14 34 34 H 1.08996 * 109.47374 * 283.95893 * 19 18 15 35 35 H 1.09000 * 109.47260 * 43.96198 * 19 18 15 36 36 H 1.09003 * 110.75782 * 274.93285 * 22 20 19 37 37 H 1.08998 * 110.75690 * 38.30680 * 22 20 19 38 38 H 1.09005 * 110.48369 * 203.38219 * 23 22 20 39 39 H 1.08995 * 110.48588 * 80.73575 * 23 22 20 40 40 H 0.96698 * 113.99956 * 297.16895 * 26 24 23 41 41 H 1.08997 * 110.03637 * 240.71465 * 27 24 23 42 42 H 1.09001 * 110.07284 * 119.30434 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.5112 2.0340 -1.3999 5 1 1.4289 2.6588 0.6782 6 1 3.5287 1.4467 0.7215 7 6 2.0080 -1.2119 0.0005 8 1 1.4913 -2.1336 0.2236 9 6 3.3915 -1.2296 -0.2909 10 6 3.9417 -0.2830 -1.1751 11 6 5.2893 -0.3099 -1.4519 12 6 6.1044 -1.2646 -0.8629 13 6 5.5732 -2.2017 0.0094 14 6 4.2280 -2.1943 0.3000 15 16 3.5560 -3.3874 1.4089 16 8 2.3598 -3.8645 0.8084 17 8 4.6311 -4.2384 1.7823 18 7 3.1007 -2.5797 2.7810 19 6 1.9977 -1.6168 2.7321 20 6 1.5181 -1.3181 4.1540 21 1 1.2965 -2.2449 4.6834 22 6 2.5797 -0.4924 4.9220 23 6 1.7397 0.2097 6.0177 24 6 0.4172 0.5681 5.3089 25 1 -0.4205 0.4441 5.9951 26 8 0.4656 1.9152 4.8345 27 6 0.2763 -0.4033 4.1239 28 1 -0.4851 0.8400 -0.0004 29 1 3.3087 0.4617 -1.6346 30 1 5.7145 0.4180 -2.1269 31 1 7.1610 -1.2785 -1.0862 32 1 6.2175 -2.9405 0.4628 33 1 3.5643 -2.7442 3.6170 34 1 2.3409 -0.6946 2.2633 35 1 1.1755 -2.0353 2.1517 36 1 3.3285 -1.1463 5.3691 37 1 3.0481 0.2407 4.2653 38 1 2.2432 1.1120 6.3648 39 1 1.5546 -0.4692 6.8501 40 1 0.5541 2.5759 5.5349 41 1 0.2447 0.1527 3.1870 42 1 -0.6295 -0.9995 4.2347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601401535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:51 Heat of formation + Delta-G solvation = -119.753587 kcal Electronic energy + Delta-G solvation = -27123.865308 eV Core-core repulsion = 23387.760356 eV Total energy + Delta-G solvation = -3736.104952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.91900 -37.89355 -36.38525 -35.76207 -34.88126 -33.94980 -33.32128 -30.71361 -30.10146 -29.05321 -27.79315 -25.48686 -23.66612 -22.08145 -21.18375 -20.61567 -19.76030 -18.47228 -17.72075 -17.09514 -17.05355 -16.36828 -15.97607 -15.47431 -15.24735 -14.75751 -14.27279 -14.19444 -13.81031 -13.53030 -13.21503 -12.85957 -12.77658 -12.48596 -12.44809 -12.14633 -11.86912 -11.74069 -11.38368 -11.32870 -11.23917 -11.14402 -10.94738 -10.77483 -10.68201 -10.60433 -10.47098 -10.39662 -10.07494 -9.93627 -9.79821 -9.49228 -9.24228 -8.63190 -8.23634 -7.82780 -7.17986 -4.85513 1.51280 2.08840 2.52403 2.95329 3.09618 3.15166 3.77059 3.96819 4.25462 4.30744 4.65787 4.66126 4.71965 5.01456 5.12133 5.29099 5.49508 5.53862 5.58011 5.65317 5.74273 5.83901 5.86777 5.92447 5.93843 6.08726 6.20174 6.23160 6.32274 6.40512 6.42376 6.50799 6.64493 6.66810 6.91502 6.96091 7.09880 7.24815 7.43603 7.56751 7.69605 7.72900 7.84430 8.17211 8.33106 8.54171 9.78340 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.006653 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.300995 B = 4207.452711 C = 5379.603741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.092 3.908 3 Si 0.901 3.099 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.462 4.462 8 H 0.138 0.862 9 C 0.162 3.838 10 C -0.239 4.239 11 C -0.044 4.044 12 C -0.260 4.260 13 C 0.018 3.982 14 C -0.770 4.770 15 S 2.707 3.293 16 O -0.967 6.967 17 O -0.999 6.999 18 N -1.121 6.121 19 C 0.133 3.867 20 C -0.100 4.100 21 H 0.078 0.922 22 C -0.119 4.119 23 C -0.156 4.156 24 C 0.100 3.900 25 H 0.053 0.947 26 O -0.562 6.562 27 C -0.115 4.115 28 H 0.292 0.708 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.404 0.596 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.370 0.630 41 H 0.090 0.910 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 3.830 10.473 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.489 4.489 8 H 0.155 0.845 9 C 0.157 3.843 10 C -0.259 4.259 11 C -0.063 4.063 12 C -0.280 4.280 13 C -0.002 4.002 14 C -0.864 4.864 15 S 2.803 3.197 16 O -0.957 6.957 17 O -0.990 6.990 18 N -0.877 5.877 19 C 0.008 3.992 20 C -0.120 4.120 21 H 0.096 0.904 22 C -0.156 4.156 23 C -0.194 4.194 24 C 0.041 3.959 25 H 0.071 0.929 26 O -0.367 6.367 27 C -0.153 4.153 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.217 0.783 41 H 0.108 0.892 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.473 2.721 9.613 10.002 hybrid contribution 0.816 1.845 0.506 2.080 sum 1.289 4.565 10.119 11.176 Atomic orbital electron populations 1.69639 1.07913 1.30988 1.30725 1.26171 0.94826 1.01414 0.90786 0.86505 0.81180 0.80057 0.79531 1.19337 1.20936 1.16640 1.20563 0.91785 0.97914 1.38636 0.84519 1.17116 0.92140 0.88152 0.86919 1.21330 0.95321 1.04511 1.04698 1.20838 0.93789 0.95804 0.95866 1.20504 0.98306 1.01714 1.07458 1.20385 0.92768 0.94395 0.92644 1.29917 1.02879 1.26628 1.26948 1.00886 0.72845 0.73115 0.72827 1.93499 1.46980 1.78980 1.76284 1.93454 1.56593 1.65320 1.83630 1.55520 1.46616 1.59804 1.25797 1.21764 0.89060 0.93074 0.95333 1.22282 0.94797 0.98207 0.96736 0.90369 1.22570 0.97267 0.98880 0.96910 1.23089 0.96989 1.00892 0.98397 1.22482 0.95521 0.82538 0.95379 0.92914 1.86649 1.96671 1.15788 1.37597 1.22156 0.97797 0.96050 0.99290 0.89665 0.87379 0.88359 0.88168 0.86892 0.76363 0.90412 0.88913 0.91594 0.90711 0.91407 0.91183 0.78324 0.89191 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.27 13.93 55.55 0.77 -17.50 16 2 C 0.09 2.17 4.77 -17.34 -0.08 2.09 16 3 Si 0.90 19.28 24.26 -169.99 -4.12 15.15 16 4 H -0.27 -5.61 6.46 56.52 0.37 -5.24 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.24 -5.33 6.95 56.52 0.39 -4.94 16 7 C -0.46 -11.42 5.35 -37.74 -0.20 -11.62 16 8 H 0.14 3.62 4.46 -52.49 -0.23 3.39 16 9 C 0.16 3.93 5.09 -106.82 -0.54 3.38 16 10 C -0.24 -5.55 7.17 -38.87 -0.28 -5.83 16 11 C -0.04 -0.93 10.02 -39.66 -0.40 -1.33 16 12 C -0.26 -5.32 10.05 -39.29 -0.39 -5.72 16 13 C 0.02 0.39 9.53 -39.67 -0.38 0.01 16 14 C -0.77 -17.69 5.97 -38.87 -0.23 -17.92 16 15 S 2.71 57.92 5.44 -107.50 -0.58 57.33 16 16 O -0.97 -23.57 14.85 -57.17 -0.85 -24.42 16 17 O -1.00 -22.08 16.97 -57.17 -0.97 -23.05 16 18 N -1.12 -19.84 5.93 -10.61 -0.06 -19.91 16 19 C 0.13 2.43 3.68 -4.04 -0.01 2.42 16 20 C -0.10 -1.45 2.95 -88.96 -0.26 -1.72 16 21 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 22 C -0.12 -1.53 6.01 -24.74 -0.15 -1.68 16 23 C -0.16 -1.67 6.56 -25.07 -0.16 -1.84 16 24 C 0.10 1.21 4.26 -25.62 -0.11 1.11 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 O -0.56 -7.47 13.21 -35.23 -0.47 -7.94 16 27 C -0.11 -1.68 6.18 -25.61 -0.16 -1.84 16 28 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 29 H 0.11 2.46 4.43 -52.49 -0.23 2.22 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.11 2.22 7.33 -52.48 -0.38 1.84 16 33 H 0.40 5.88 8.37 -34.48 -0.29 5.60 16 34 H 0.08 1.56 5.90 -51.93 -0.31 1.25 16 35 H 0.09 1.91 6.20 -51.93 -0.32 1.59 16 36 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 38 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.37 3.10 9.10 45.56 0.41 3.52 16 41 H 0.09 1.59 7.65 -51.93 -0.40 1.20 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -30.10 337.27 -9.29 -39.39 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -4.72 Total: 16.33 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: -3.37 Total: -40.48 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.71 Total: -37.40 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -2.28 Total: -55.40 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.12 Total: 15.15 kcal Atomic # 16 Polarization: 57.92 SS G_CDS: -0.58 Total: 57.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.10 -9.29 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.367 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds