Wall clock time and date at job start Tue Mar 31 2020 14:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99602 * 2 1 4 4 H 1.48506 * 109.47131 * 268.97804 * 3 2 1 5 5 H 1.48493 * 109.47391 * 28.97500 * 3 2 1 6 6 H 1.48498 * 109.47343 * 148.97963 * 3 2 1 7 7 C 1.39942 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00111 * 346.22451 * 7 2 1 9 9 C 1.41399 * 119.99768 * 166.22976 * 7 2 1 10 10 C 1.40734 * 120.23919 * 328.66679 * 9 7 2 11 11 C 1.37605 * 119.73853 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24904 * 359.97438 * 11 10 9 13 13 C 1.38610 * 120.50301 * 0.02562 * 12 11 10 14 14 C 1.37633 * 120.25035 * 0.02562 * 13 12 11 15 15 S 1.76199 * 120.13186 * 179.97438 * 14 13 12 16 16 O 1.42097 * 106.40518 * 224.66944 * 15 14 13 17 17 O 1.42105 * 106.40054 * 357.58769 * 15 14 13 18 18 N 1.65605 * 107.21633 * 111.12465 * 15 14 13 19 19 C 1.46498 * 119.99642 * 66.72126 * 18 15 14 20 20 C 1.53005 * 109.46936 * 163.96043 * 19 18 15 21 21 H 1.09004 * 110.43128 * 307.54333 * 20 19 18 22 22 C 1.54884 * 110.48568 * 70.22210 * 20 19 18 23 23 C 1.54896 * 102.74815 * 156.62301 * 22 20 19 24 24 C 1.54262 * 104.19166 * 322.05685 * 23 22 20 25 25 H 1.08997 * 110.07404 * 142.92105 * 24 23 22 26 26 O 1.42904 * 110.03251 * 264.32450 * 24 23 22 27 27 C 1.53871 * 106.60360 * 23.61103 * 24 23 22 28 28 H 0.96998 * 120.00564 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.13191 * 0.03028 * 10 9 7 30 30 H 1.07998 * 119.87236 * 180.25380 * 11 10 9 31 31 H 1.08007 * 119.74637 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.87499 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00115 * 246.71684 * 18 15 14 34 34 H 1.08996 * 109.47374 * 283.95893 * 19 18 15 35 35 H 1.09000 * 109.47260 * 43.96198 * 19 18 15 36 36 H 1.09003 * 110.75782 * 274.93285 * 22 20 19 37 37 H 1.08998 * 110.75690 * 38.30680 * 22 20 19 38 38 H 1.09005 * 110.48369 * 203.38219 * 23 22 20 39 39 H 1.08995 * 110.48588 * 80.73575 * 23 22 20 40 40 H 0.96698 * 113.99956 * 297.16895 * 26 24 23 41 41 H 1.08997 * 110.03637 * 240.71465 * 27 24 23 42 42 H 1.09001 * 110.07284 * 119.30434 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.5112 2.0340 -1.3999 5 1 1.4289 2.6588 0.6782 6 1 3.5287 1.4467 0.7215 7 6 2.0080 -1.2119 0.0005 8 1 1.4913 -2.1336 0.2236 9 6 3.3915 -1.2296 -0.2909 10 6 3.9417 -0.2830 -1.1751 11 6 5.2893 -0.3099 -1.4519 12 6 6.1044 -1.2646 -0.8629 13 6 5.5732 -2.2017 0.0094 14 6 4.2280 -2.1943 0.3000 15 16 3.5560 -3.3874 1.4089 16 8 2.3598 -3.8645 0.8084 17 8 4.6311 -4.2384 1.7823 18 7 3.1007 -2.5797 2.7810 19 6 1.9977 -1.6168 2.7321 20 6 1.5181 -1.3181 4.1540 21 1 1.2965 -2.2449 4.6834 22 6 2.5797 -0.4924 4.9220 23 6 1.7397 0.2097 6.0177 24 6 0.4172 0.5681 5.3089 25 1 -0.4205 0.4441 5.9951 26 8 0.4656 1.9152 4.8345 27 6 0.2763 -0.4033 4.1239 28 1 -0.4851 0.8400 -0.0004 29 1 3.3087 0.4617 -1.6346 30 1 5.7145 0.4180 -2.1269 31 1 7.1610 -1.2785 -1.0862 32 1 6.2175 -2.9405 0.4628 33 1 3.5643 -2.7442 3.6170 34 1 2.3409 -0.6946 2.2633 35 1 1.1755 -2.0353 2.1517 36 1 3.3285 -1.1463 5.3691 37 1 3.0481 0.2407 4.2653 38 1 2.2432 1.1120 6.3648 39 1 1.5546 -0.4692 6.8501 40 1 0.5541 2.5759 5.5349 41 1 0.2447 0.1527 3.1870 42 1 -0.6295 -0.9995 4.2347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601401535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:50 Heat of formation + Delta-G solvation = -143.573582 kcal Electronic energy + Delta-G solvation = -27124.898220 eV Core-core repulsion = 23387.760356 eV Total energy + Delta-G solvation = -3737.137864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.00833 -39.58879 -38.14145 -37.01832 -36.69917 -35.65018 -34.66676 -32.46721 -31.81683 -30.15637 -28.91244 -27.24437 -24.98893 -23.78527 -22.93295 -21.59623 -20.98423 -20.12173 -19.51140 -18.72330 -18.18210 -17.94814 -17.33411 -17.00519 -16.62804 -16.23725 -15.90524 -15.59666 -15.43353 -15.13932 -14.74783 -14.50532 -14.10753 -13.82054 -13.70685 -13.61263 -13.51904 -13.11930 -13.05506 -12.98287 -12.90410 -12.68788 -12.46865 -12.39808 -12.19367 -11.92823 -11.74288 -11.61894 -11.44659 -11.38675 -11.24501 -10.97926 -10.73332 -10.20714 -9.95186 -9.58505 -8.97235 -6.68656 -0.19215 0.34671 0.77711 1.20816 1.36145 1.42060 2.02500 2.33887 2.51588 2.93027 3.34102 3.36894 3.63612 3.72218 3.73305 4.05509 4.21041 4.30208 4.34135 4.42865 4.48287 4.56229 4.61712 4.68945 4.70997 4.80954 4.85820 4.91600 5.00093 5.11338 5.14220 5.20950 5.23013 5.32066 5.36843 5.38872 5.55302 5.58157 5.71285 5.83681 6.09790 6.31508 6.34937 6.54675 6.71197 7.00875 8.04380 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.006653 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.300995 B = 4207.452711 C = 5379.603741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.941 3.059 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.481 4.481 8 H 0.109 0.891 9 C 0.145 3.855 10 C -0.265 4.265 11 C -0.042 4.042 12 C -0.251 4.251 13 C 0.004 3.996 14 C -0.785 4.785 15 S 2.721 3.279 16 O -1.002 7.002 17 O -1.005 7.005 18 N -1.104 6.104 19 C 0.140 3.860 20 C -0.097 4.097 21 H 0.099 0.901 22 C -0.121 4.121 23 C -0.145 4.145 24 C 0.100 3.900 25 H 0.078 0.922 26 O -0.589 6.589 27 C -0.121 4.121 28 H 0.299 0.701 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.421 0.579 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.391 0.609 41 H 0.050 0.950 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 4.738 12.072 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.148 4.148 3 Si 0.765 3.235 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.509 4.509 8 H 0.126 0.874 9 C 0.140 3.860 10 C -0.285 4.285 11 C -0.060 4.060 12 C -0.271 4.271 13 C -0.016 4.016 14 C -0.879 4.879 15 S 2.817 3.183 16 O -0.992 6.992 17 O -0.996 6.996 18 N -0.864 5.864 19 C 0.014 3.986 20 C -0.117 4.117 21 H 0.117 0.883 22 C -0.158 4.158 23 C -0.182 4.182 24 C 0.042 3.958 25 H 0.096 0.904 26 O -0.398 6.398 27 C -0.160 4.160 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.257 0.743 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.241 0.759 41 H 0.068 0.932 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.476 3.631 11.222 12.051 hybrid contribution 0.308 1.494 -0.021 1.525 sum 2.784 5.125 11.201 12.628 Atomic orbital electron populations 1.69647 1.08690 1.31882 1.32122 1.26539 0.95151 1.02895 0.90237 0.85899 0.79941 0.77875 0.79768 1.18308 1.20338 1.17542 1.20364 0.92389 0.97406 1.40723 0.87378 1.17314 0.92117 0.89118 0.87408 1.21484 0.96759 1.04901 1.05339 1.21291 0.92862 0.96261 0.95605 1.21004 1.00186 1.00258 1.05606 1.20754 0.92365 0.95342 0.93142 1.30176 1.03782 1.26352 1.27549 1.00301 0.72040 0.72903 0.73024 1.93461 1.48470 1.79884 1.77400 1.93432 1.56620 1.65755 1.83762 1.55109 1.46521 1.59263 1.25541 1.21555 0.87895 0.91594 0.97555 1.22283 0.95443 0.99483 0.94468 0.88304 1.22584 0.97424 0.98630 0.97191 1.23057 0.95424 1.01790 0.97939 1.22511 0.97469 0.81546 0.94308 0.90439 1.86598 1.96837 1.16827 1.39540 1.22201 0.98259 0.96684 0.98823 0.88961 0.87441 0.84641 0.84372 0.85062 0.74302 0.92564 0.92098 0.89570 0.93013 0.89937 0.88659 0.75935 0.93164 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.93 13.93 21.83 0.30 -39.62 16 2 C 0.07 3.59 4.77 85.26 0.41 4.00 16 3 Si 0.94 40.27 24.26 68.60 1.66 41.93 16 4 H -0.26 -10.50 6.46 99.48 0.64 -9.86 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.25 -11.00 6.95 99.48 0.69 -10.31 16 7 C -0.48 -24.97 5.35 23.46 0.13 -24.84 16 8 H 0.11 6.16 4.46 -2.91 -0.01 6.15 16 9 C 0.15 7.18 5.09 -21.29 -0.11 7.07 16 10 C -0.27 -12.15 7.17 22.73 0.16 -11.99 16 11 C -0.04 -1.64 10.02 22.22 0.22 -1.42 16 12 C -0.25 -9.45 10.05 22.46 0.23 -9.23 16 13 C 0.00 0.15 9.53 22.22 0.21 0.36 16 14 C -0.79 -36.20 5.97 22.73 0.14 -36.06 16 15 S 2.72 118.33 5.44 -56.49 -0.31 118.03 16 16 O -1.00 -51.05 14.85 -128.00 -1.90 -52.95 16 17 O -1.01 -43.80 16.97 -128.00 -2.17 -45.97 16 18 N -1.10 -39.46 5.93 -187.49 -1.11 -40.58 16 19 C 0.14 5.32 3.68 86.38 0.32 5.63 16 20 C -0.10 -2.78 2.95 -9.72 -0.03 -2.80 16 21 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 22 C -0.12 -2.91 6.01 31.89 0.19 -2.72 16 23 C -0.14 -2.66 6.56 31.67 0.21 -2.45 16 24 C 0.10 2.26 4.26 31.32 0.13 2.40 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 O -0.59 -15.05 13.21 -148.98 -1.97 -17.02 16 27 C -0.12 -3.59 6.18 31.32 0.19 -3.40 16 28 H 0.30 13.54 8.30 -92.71 -0.77 12.77 16 29 H 0.11 4.84 4.43 -2.92 -0.01 4.83 16 30 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.13 4.87 7.33 -2.91 -0.02 4.84 16 33 H 0.42 11.86 8.37 -96.74 -0.81 11.05 16 34 H 0.06 2.39 5.90 -2.39 -0.01 2.37 16 35 H 0.06 2.71 6.20 -2.39 -0.01 2.69 16 36 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 37 H 0.05 1.49 7.97 -2.39 -0.02 1.47 16 38 H 0.08 1.31 8.06 -2.38 -0.02 1.29 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.39 5.82 9.10 -74.06 -0.67 5.15 16 41 H 0.05 1.89 7.65 -2.39 -0.02 1.87 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.13 337.27 -3.58 -70.71 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.49 Total: 40.92 kcal Atomic # 6 Polarization: -77.85 SS G_CDS: 2.40 Total: -75.45 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -0.81 Total: -80.20 kcal Atomic # 8 Polarization: -109.90 SS G_CDS: -6.04 Total: -115.94 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.66 Total: 41.93 kcal Atomic # 16 Polarization: 118.33 SS G_CDS: -0.31 Total: 118.03 kcal Total: -67.13 -3.58 -70.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.861 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds