Wall clock time and date at job start Tue Mar 31 2020 14:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48510 * 109.47101 * 235.00158 * 3 2 1 5 5 H 1.48495 * 109.47336 * 355.00146 * 3 2 1 6 6 H 1.48500 * 109.47126 * 115.00269 * 3 2 1 7 7 C 1.39946 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99668 * 201.71826 * 7 2 1 9 9 C 1.41393 * 120.00447 * 21.71715 * 7 2 1 10 10 C 1.40737 * 120.24431 * 33.25170 * 9 7 2 11 11 C 1.37592 * 119.74759 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24740 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.50003 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.25084 * 359.67260 * 13 12 11 15 15 S 1.76207 * 120.13093 * 180.30429 * 14 13 12 16 16 O 1.42103 * 106.39791 * 223.40365 * 15 14 13 17 17 O 1.42096 * 106.39824 * 356.32326 * 15 14 13 18 18 N 1.65596 * 107.21764 * 109.86172 * 15 14 13 19 19 C 1.47606 * 118.64024 * 98.67205 * 18 15 14 20 20 C 1.54300 * 111.94443 * 137.77682 * 19 18 15 21 21 C 1.50880 * 110.23434 * 319.69869 * 20 19 18 22 22 C 1.52568 * 109.36135 * 91.79559 * 21 20 19 23 23 H 1.08999 * 108.50607 * 36.24533 * 22 21 20 24 24 O 1.42903 * 108.51107 * 153.73597 * 22 21 20 25 25 C 1.47086 * 114.32726 * 274.99022 * 22 21 20 26 26 C 1.44580 * 118.64632 * 278.93261 * 18 15 14 27 27 H 0.97002 * 120.00056 * 185.66859 * 1 2 3 28 28 H 1.08001 * 120.12522 * 0.03467 * 10 9 7 29 29 H 1.07998 * 119.87962 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.74897 * 179.97438 * 12 11 10 31 31 H 1.08008 * 119.87190 * 179.97438 * 13 12 11 32 32 H 1.09000 * 108.94407 * 258.57296 * 19 18 15 33 33 H 1.08997 * 108.95173 * 17.19745 * 19 18 15 34 34 H 1.09001 * 109.36782 * 199.41860 * 20 19 18 35 35 H 1.08999 * 109.11973 * 79.82191 * 20 19 18 36 36 H 1.09004 * 109.48616 * 331.83484 * 21 20 19 37 37 H 1.08993 * 109.49246 * 211.76655 * 21 20 19 38 38 H 0.96694 * 113.99667 * 304.76419 * 24 22 21 39 39 H 1.09003 * 109.33416 * 302.53902 * 25 22 21 40 40 H 1.09004 * 109.18942 * 182.97309 * 25 22 21 41 41 H 1.08999 * 109.44489 * 30.75188 * 26 18 15 42 42 H 1.08999 * 109.44754 * 150.69566 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.1852 1.6448 -1.1470 5 1 1.2819 2.7437 -0.1220 6 1 3.0022 1.7505 1.2689 7 6 2.0079 -1.2120 -0.0005 8 1 3.0305 -1.2454 0.3456 9 6 1.3762 -2.3929 -0.4541 10 6 0.4239 -2.3348 -1.4887 11 6 -0.1849 -3.4902 -1.9218 12 6 0.1363 -4.7084 -1.3426 13 6 1.0719 -4.7773 -0.3223 14 6 1.6980 -3.6352 0.1226 15 16 2.8928 -3.7275 1.4145 16 8 2.6188 -2.6444 2.2926 17 8 2.9215 -5.0835 1.8382 18 7 4.3719 -3.4178 0.7372 19 6 4.9333 -2.0578 0.8553 20 6 6.4404 -2.0828 1.1851 21 6 6.7366 -3.1676 2.1911 22 6 7.0987 -4.4543 1.4555 23 1 7.6657 -4.1940 0.5617 24 8 7.9355 -5.2422 2.3046 25 6 5.9417 -5.2689 1.0540 26 6 5.0574 -4.4892 0.0497 27 1 -0.4850 -0.8359 0.0830 28 1 0.1721 -1.3870 -1.9411 29 1 -0.9163 -3.4480 -2.7153 30 1 -0.3469 -5.6102 -1.6886 31 1 1.3141 -5.7315 0.1219 32 1 4.7822 -1.5296 -0.0862 33 1 4.4063 -1.5248 1.6467 34 1 6.7365 -1.1178 1.5965 35 1 7.0028 -2.2740 0.2712 36 1 5.8565 -3.3386 2.8111 37 1 7.5717 -2.8614 2.8209 38 1 8.7254 -4.7800 2.6168 39 1 5.3519 -5.5177 1.9363 40 1 6.2954 -6.1874 0.5856 41 1 4.3246 -5.1656 -0.3901 42 1 5.6848 -4.0720 -0.7379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601423001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:31 Heat of formation + Delta-G solvation = -113.579965 kcal Electronic energy + Delta-G solvation = -27405.782564 eV Core-core repulsion = 23669.945320 eV Total energy + Delta-G solvation = -3735.837244 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.16287 -37.86058 -36.44434 -36.14122 -34.87881 -34.05219 -32.63018 -31.69265 -30.20464 -29.52145 -25.98191 -25.43569 -24.84420 -21.85443 -21.27244 -20.93347 -20.49581 -18.52726 -17.81492 -17.49946 -17.09547 -16.22064 -15.82733 -15.08011 -14.84640 -14.76912 -14.27159 -14.11946 -14.04340 -13.50450 -13.34717 -13.04501 -12.91059 -12.63582 -12.41010 -12.25879 -11.82466 -11.70581 -11.60984 -11.28955 -11.24552 -11.16927 -11.06492 -10.93006 -10.69340 -10.59010 -10.51494 -10.48726 -10.31921 -9.84122 -9.82917 -9.37058 -9.22803 -8.55128 -8.24610 -7.81455 -7.44128 -4.83180 1.39645 2.18951 2.62019 3.05203 3.14559 3.23180 3.72514 3.87060 4.17863 4.34807 4.63315 4.69550 4.84483 5.03167 5.08324 5.19736 5.25390 5.36229 5.43423 5.53913 5.71593 5.78431 5.79181 5.88548 5.91822 6.02808 6.12492 6.17747 6.19683 6.24931 6.28463 6.43527 6.51634 6.59334 6.84968 7.10075 7.14720 7.25493 7.39243 7.53249 7.60034 7.62776 7.81043 7.95468 8.33309 8.57389 9.82408 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.006256 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.198450 B = 4474.770360 C = 5895.680668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.044 3.956 3 Si 1.059 2.941 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.097 0.903 9 C 0.166 3.834 10 C -0.205 4.205 11 C -0.057 4.057 12 C -0.261 4.261 13 C 0.009 3.991 14 C -0.779 4.779 15 S 2.693 3.307 16 O -0.960 6.960 17 O -0.992 6.992 18 N -0.994 5.994 19 C 0.109 3.891 20 C -0.127 4.127 21 C -0.148 4.148 22 C 0.116 3.884 23 H 0.046 0.954 24 O -0.575 6.575 25 C -0.143 4.143 26 C 0.138 3.862 27 H 0.302 0.698 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.372 0.628 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -1.731 -1.082 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.180 4.180 3 Si 0.881 3.119 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.535 4.535 8 H 0.114 0.886 9 C 0.160 3.840 10 C -0.225 4.225 11 C -0.076 4.076 12 C -0.281 4.281 13 C -0.011 4.011 14 C -0.874 4.874 15 S 2.791 3.209 16 O -0.950 6.950 17 O -0.982 6.982 18 N -0.829 5.829 19 C -0.016 4.016 20 C -0.166 4.166 21 C -0.186 4.186 22 C 0.058 3.942 23 H 0.064 0.936 24 O -0.380 6.380 25 C -0.182 4.182 26 C 0.011 3.989 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.219 0.781 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.141 -0.697 -0.356 11.169 hybrid contribution 0.151 -1.258 -0.724 1.459 sum 11.292 -1.954 -1.081 11.511 Atomic orbital electron populations 1.70433 1.08228 1.34595 1.26750 1.27064 0.95587 1.04350 0.90985 0.83733 0.76040 0.73644 0.78502 1.19566 1.19421 1.19204 1.21145 1.02381 0.93639 1.36379 0.88575 1.17037 0.88712 0.90467 0.87735 1.21319 1.03462 0.97175 1.00556 1.20850 0.96430 0.93305 0.97030 1.20474 1.06607 0.96687 1.04346 1.20354 0.92403 0.95562 0.92750 1.30003 1.28112 1.00474 1.28769 1.01450 0.72489 0.72420 0.74497 1.93517 1.83627 1.54805 1.63070 1.93453 1.87015 1.36630 1.81151 1.57309 1.36454 1.16446 1.72729 1.21986 0.93789 0.82391 1.03390 1.21737 0.96489 0.99177 0.99185 1.21819 1.02566 0.95342 0.98837 1.20770 0.91614 0.90293 0.91540 0.93595 1.86587 1.38272 1.43873 1.69297 1.21331 0.96346 0.98840 1.01724 1.20940 0.96172 0.88119 0.93718 0.88479 0.87329 0.88556 0.88456 0.87252 0.90864 0.88088 0.90502 0.91578 0.90932 0.91523 0.78149 0.89764 0.90301 0.90056 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.80 12.56 55.55 0.70 -19.10 16 2 C 0.04 1.06 4.98 -17.34 -0.09 0.97 16 3 Si 1.06 20.09 29.98 -169.99 -5.10 14.99 16 4 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.51 -12.38 7.29 -37.74 -0.28 -12.65 16 8 H 0.10 2.15 2.84 -52.48 -0.15 2.00 16 9 C 0.17 4.10 5.14 -106.82 -0.55 3.55 16 10 C -0.21 -4.90 7.95 -38.87 -0.31 -5.21 16 11 C -0.06 -1.24 10.02 -39.66 -0.40 -1.64 16 12 C -0.26 -5.57 10.05 -39.29 -0.39 -5.96 16 13 C 0.01 0.20 9.53 -39.66 -0.38 -0.17 16 14 C -0.78 -18.37 5.98 -38.87 -0.23 -18.60 16 15 S 2.69 58.68 4.96 -107.50 -0.53 58.14 16 16 O -0.96 -23.57 14.50 -57.17 -0.83 -24.40 16 17 O -0.99 -22.39 15.23 -57.17 -0.87 -23.26 16 18 N -0.99 -17.24 2.51 -113.10 -0.28 -17.52 16 19 C 0.11 1.71 4.42 -2.76 -0.01 1.70 16 20 C -0.13 -1.49 5.71 -27.11 -0.15 -1.65 16 21 C -0.15 -1.81 5.15 -28.02 -0.14 -1.95 16 22 C 0.12 1.43 2.88 -29.79 -0.09 1.35 16 23 H 0.05 0.49 7.36 -51.93 -0.38 0.11 16 24 O -0.57 -7.04 13.22 -35.23 -0.47 -7.50 16 25 C -0.14 -2.05 5.22 -28.59 -0.15 -2.20 16 26 C 0.14 2.02 5.28 -4.08 -0.02 2.00 16 27 H 0.30 7.95 6.74 -40.82 -0.28 7.68 16 28 H 0.11 2.60 6.97 -52.49 -0.37 2.24 16 29 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.11 2.26 7.33 -52.48 -0.38 1.87 16 32 H 0.07 1.12 7.26 -51.93 -0.38 0.74 16 33 H 0.10 1.77 5.99 -51.93 -0.31 1.46 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.68 7.32 -51.93 -0.38 0.30 16 36 H 0.07 1.08 7.49 -51.93 -0.39 0.69 16 37 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 38 H 0.37 2.85 8.81 45.56 0.40 3.25 16 39 H 0.08 1.43 7.15 -51.93 -0.37 1.06 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 42 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -30.62 335.39 -10.23 -40.85 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.71 Total: 13.22 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: -3.19 Total: -40.46 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.41 Total: -36.63 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -2.17 Total: -55.17 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.10 Total: 14.99 kcal Atomic # 16 Polarization: 58.68 SS G_CDS: -0.53 Total: 58.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.62 -10.23 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601423001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.734 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds