Wall clock time and date at job start Tue Mar 31 2020 14:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48510 * 109.47101 * 235.00158 * 3 2 1 5 5 H 1.48495 * 109.47336 * 355.00146 * 3 2 1 6 6 H 1.48500 * 109.47126 * 115.00269 * 3 2 1 7 7 C 1.39946 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99668 * 201.71826 * 7 2 1 9 9 C 1.41393 * 120.00447 * 21.71715 * 7 2 1 10 10 C 1.40737 * 120.24431 * 33.25170 * 9 7 2 11 11 C 1.37592 * 119.74759 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24740 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.50003 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.25084 * 359.67260 * 13 12 11 15 15 S 1.76207 * 120.13093 * 180.30429 * 14 13 12 16 16 O 1.42103 * 106.39791 * 223.40365 * 15 14 13 17 17 O 1.42096 * 106.39824 * 356.32326 * 15 14 13 18 18 N 1.65596 * 107.21764 * 109.86172 * 15 14 13 19 19 C 1.47606 * 118.64024 * 98.67205 * 18 15 14 20 20 C 1.54300 * 111.94443 * 137.77682 * 19 18 15 21 21 C 1.50880 * 110.23434 * 319.69869 * 20 19 18 22 22 C 1.52568 * 109.36135 * 91.79559 * 21 20 19 23 23 H 1.08999 * 108.50607 * 36.24533 * 22 21 20 24 24 O 1.42903 * 108.51107 * 153.73597 * 22 21 20 25 25 C 1.47086 * 114.32726 * 274.99022 * 22 21 20 26 26 C 1.44580 * 118.64632 * 278.93261 * 18 15 14 27 27 H 0.97002 * 120.00056 * 185.66859 * 1 2 3 28 28 H 1.08001 * 120.12522 * 0.03467 * 10 9 7 29 29 H 1.07998 * 119.87962 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.74897 * 179.97438 * 12 11 10 31 31 H 1.08008 * 119.87190 * 179.97438 * 13 12 11 32 32 H 1.09000 * 108.94407 * 258.57296 * 19 18 15 33 33 H 1.08997 * 108.95173 * 17.19745 * 19 18 15 34 34 H 1.09001 * 109.36782 * 199.41860 * 20 19 18 35 35 H 1.08999 * 109.11973 * 79.82191 * 20 19 18 36 36 H 1.09004 * 109.48616 * 331.83484 * 21 20 19 37 37 H 1.08993 * 109.49246 * 211.76655 * 21 20 19 38 38 H 0.96694 * 113.99667 * 304.76419 * 24 22 21 39 39 H 1.09003 * 109.33416 * 302.53902 * 25 22 21 40 40 H 1.09004 * 109.18942 * 182.97309 * 25 22 21 41 41 H 1.08999 * 109.44489 * 30.75188 * 26 18 15 42 42 H 1.08999 * 109.44754 * 150.69566 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.1852 1.6448 -1.1470 5 1 1.2819 2.7437 -0.1220 6 1 3.0022 1.7505 1.2689 7 6 2.0079 -1.2120 -0.0005 8 1 3.0305 -1.2454 0.3456 9 6 1.3762 -2.3929 -0.4541 10 6 0.4239 -2.3348 -1.4887 11 6 -0.1849 -3.4902 -1.9218 12 6 0.1363 -4.7084 -1.3426 13 6 1.0719 -4.7773 -0.3223 14 6 1.6980 -3.6352 0.1226 15 16 2.8928 -3.7275 1.4145 16 8 2.6188 -2.6444 2.2926 17 8 2.9215 -5.0835 1.8382 18 7 4.3719 -3.4178 0.7372 19 6 4.9333 -2.0578 0.8553 20 6 6.4404 -2.0828 1.1851 21 6 6.7366 -3.1676 2.1911 22 6 7.0987 -4.4543 1.4555 23 1 7.6657 -4.1940 0.5617 24 8 7.9355 -5.2422 2.3046 25 6 5.9417 -5.2689 1.0540 26 6 5.0574 -4.4892 0.0497 27 1 -0.4850 -0.8359 0.0830 28 1 0.1721 -1.3870 -1.9411 29 1 -0.9163 -3.4480 -2.7153 30 1 -0.3469 -5.6102 -1.6886 31 1 1.3141 -5.7315 0.1219 32 1 4.7822 -1.5296 -0.0862 33 1 4.4063 -1.5248 1.6467 34 1 6.7365 -1.1178 1.5965 35 1 7.0028 -2.2740 0.2712 36 1 5.8565 -3.3386 2.8111 37 1 7.5717 -2.8614 2.8209 38 1 8.7254 -4.7800 2.6168 39 1 5.3519 -5.5177 1.9363 40 1 6.2954 -6.1874 0.5856 41 1 4.3246 -5.1656 -0.3901 42 1 5.6848 -4.0720 -0.7379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601423001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:30 Heat of formation + Delta-G solvation = -135.292409 kcal Electronic energy + Delta-G solvation = -27406.724086 eV Core-core repulsion = 23669.945320 eV Total energy + Delta-G solvation = -3736.778766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21626 -39.63180 -38.22172 -37.24258 -36.69498 -35.82917 -33.70422 -32.83633 -31.96774 -31.30855 -27.40297 -26.85307 -26.06037 -23.61093 -23.04141 -22.16222 -21.50016 -20.25749 -19.40652 -18.74531 -18.37515 -17.91451 -17.14676 -16.67621 -16.36726 -16.05381 -15.71328 -15.57484 -15.37200 -15.06351 -14.83026 -14.45263 -14.17194 -14.04362 -13.83599 -13.68546 -13.32192 -13.10615 -13.05265 -13.01712 -12.89340 -12.72665 -12.66996 -12.26530 -12.06040 -11.99032 -11.95340 -11.67989 -11.49773 -11.39317 -11.09067 -10.96305 -10.73248 -10.05527 -9.88302 -9.63059 -9.28310 -6.68286 -0.27699 0.38871 0.83671 1.50628 1.63936 1.77040 2.19458 2.32030 2.59616 2.92159 3.26725 3.33601 3.59285 3.62995 3.91371 4.06081 4.13975 4.19181 4.20232 4.30387 4.30782 4.49707 4.57901 4.64223 4.67915 4.73375 4.79968 4.87617 5.07278 5.09657 5.12742 5.18127 5.21778 5.31892 5.36448 5.38135 5.46756 5.56058 5.68968 5.80994 5.90216 5.99327 6.15560 6.53993 6.78088 6.96386 7.94236 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.006256 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.198450 B = 4474.770360 C = 5895.680668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.007 3.993 3 Si 1.098 2.902 4 H -0.242 1.242 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.110 0.890 9 C 0.144 3.856 10 C -0.228 4.228 11 C -0.056 4.056 12 C -0.257 4.257 13 C -0.007 4.007 14 C -0.796 4.796 15 S 2.705 3.295 16 O -0.995 6.995 17 O -1.006 7.006 18 N -0.985 5.985 19 C 0.099 3.901 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.116 3.884 23 H 0.076 0.924 24 O -0.592 6.592 25 C -0.142 4.142 26 C 0.130 3.870 27 H 0.283 0.717 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.393 0.607 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.633 -1.708 -2.282 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.210 4.210 3 Si 0.913 3.087 4 H -0.166 1.166 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.563 4.563 8 H 0.128 0.872 9 C 0.139 3.861 10 C -0.248 4.248 11 C -0.074 4.074 12 C -0.277 4.277 13 C -0.026 4.026 14 C -0.890 4.890 15 S 2.803 3.197 16 O -0.986 6.986 17 O -0.997 6.997 18 N -0.823 5.823 19 C -0.025 4.025 20 C -0.156 4.156 21 C -0.187 4.187 22 C 0.058 3.942 23 H 0.093 0.907 24 O -0.401 6.401 25 C -0.181 4.181 26 C 0.004 3.996 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.242 0.758 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.801 -0.697 -1.565 13.907 hybrid contribution -0.668 -1.451 -0.343 1.634 sum 13.133 -2.148 -1.908 13.444 Atomic orbital electron populations 1.70556 1.09139 1.33293 1.29868 1.28489 0.95586 1.07612 0.89351 0.83321 0.75541 0.69679 0.80122 1.16561 1.19715 1.17805 1.21464 1.03298 0.94030 1.37463 0.87221 1.17363 0.89247 0.91225 0.88229 1.21380 1.04591 0.97664 1.01178 1.21223 0.96220 0.92680 0.97307 1.20904 1.05616 0.97827 1.03365 1.20674 0.92755 0.95830 0.93375 1.30335 1.29212 1.00634 1.28784 1.00903 0.73229 0.71532 0.74073 1.93463 1.84722 1.55907 1.64462 1.93422 1.87546 1.37208 1.81502 1.56962 1.34625 1.17934 1.72735 1.22189 0.96458 0.80997 1.02827 1.21742 0.93181 1.00228 1.00407 1.21858 1.02124 0.95758 0.98966 1.20731 0.91154 0.89659 0.92670 0.90668 1.86539 1.39385 1.44660 1.69492 1.21305 0.96744 0.99861 1.00224 1.21219 0.96415 0.87492 0.94501 0.90494 0.88383 0.85434 0.85101 0.85951 0.90408 0.90593 0.88275 0.88845 0.94508 0.88689 0.75775 0.93332 0.89008 0.90796 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.62 12.56 21.83 0.27 -42.35 16 2 C 0.01 0.35 4.98 85.26 0.42 0.78 16 3 Si 1.10 40.07 29.98 68.60 2.06 42.12 16 4 H -0.24 -7.67 7.11 99.48 0.71 -6.97 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.54 -26.68 7.29 23.46 0.17 -26.51 16 8 H 0.11 4.98 2.84 -2.91 -0.01 4.97 16 9 C 0.14 7.32 5.14 -21.29 -0.11 7.21 16 10 C -0.23 -11.12 7.95 22.73 0.18 -10.94 16 11 C -0.06 -2.38 10.02 22.22 0.22 -2.15 16 12 C -0.26 -10.62 10.05 22.46 0.23 -10.39 16 13 C -0.01 -0.30 9.53 22.22 0.21 -0.09 16 14 C -0.80 -38.26 5.98 22.73 0.14 -38.12 16 15 S 2.70 120.87 4.96 -56.49 -0.28 120.59 16 16 O -1.00 -50.90 14.50 -128.00 -1.86 -52.76 16 17 O -1.01 -46.59 15.23 -128.00 -1.95 -48.54 16 18 N -0.98 -33.69 2.51 -511.74 -1.29 -34.98 16 19 C 0.10 3.00 4.42 86.61 0.38 3.38 16 20 C -0.12 -2.35 5.71 30.35 0.17 -2.17 16 21 C -0.15 -3.27 5.15 29.76 0.15 -3.12 16 22 C 0.12 2.51 2.88 28.61 0.08 2.60 16 23 H 0.08 1.24 7.36 -2.39 -0.02 1.22 16 24 O -0.59 -12.87 13.22 -148.98 -1.97 -14.84 16 25 C -0.14 -3.85 5.22 29.39 0.15 -3.70 16 26 C 0.13 3.61 5.28 87.37 0.46 4.07 16 27 H 0.28 15.74 6.74 -92.71 -0.63 15.11 16 28 H 0.10 4.88 6.97 -2.91 -0.02 4.86 16 29 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 31 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 32 H 0.08 2.26 7.26 -2.39 -0.02 2.24 16 33 H 0.08 2.68 5.99 -2.39 -0.01 2.67 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.42 7.32 -2.39 -0.02 1.40 16 36 H 0.04 1.07 7.49 -2.38 -0.02 1.06 16 37 H 0.09 1.53 7.85 -2.39 -0.02 1.51 16 38 H 0.39 4.67 8.81 -74.06 -0.65 4.02 16 39 H 0.05 1.66 7.15 -2.39 -0.02 1.64 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 2.16 7.89 -2.39 -0.02 2.14 16 42 H 0.11 2.34 8.06 -2.39 -0.02 2.32 16 Total: -1.00 -69.58 335.39 -1.59 -71.17 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.55 Total: 38.74 kcal Atomic # 6 Polarization: -82.03 SS G_CDS: 2.87 Total: -79.16 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.01 Total: -77.32 kcal Atomic # 8 Polarization: -110.37 SS G_CDS: -5.77 Total: -116.14 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.06 Total: 42.12 kcal Atomic # 16 Polarization: 120.87 SS G_CDS: -0.28 Total: 120.59 kcal Total: -69.58 -1.59 -71.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601423001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.119 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds