Wall clock time and date at job start Tue Mar 31 2020 14:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47596 * 185.00877 * 3 2 1 5 5 H 1.48503 * 109.47092 * 305.01413 * 3 2 1 6 6 H 1.48504 * 109.47128 * 65.01154 * 3 2 1 7 7 C 1.39940 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00138 * 195.33406 * 7 2 1 9 9 C 1.41395 * 120.00139 * 15.32758 * 7 2 1 10 10 C 1.40735 * 120.24335 * 24.17568 * 9 7 2 11 11 C 1.37595 * 119.74809 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24716 * 359.73259 * 11 10 9 13 13 C 1.38615 * 120.50062 * 0.54886 * 12 11 10 14 14 C 1.37641 * 120.24639 * 359.44955 * 13 12 11 15 15 S 1.76203 * 120.12662 * 180.30010 * 14 13 12 16 16 O 1.42103 * 106.39864 * 231.53806 * 15 14 13 17 17 O 1.42100 * 106.39934 * 4.45668 * 15 14 13 18 18 N 1.65599 * 107.21830 * 117.99912 * 15 14 13 19 19 C 1.46498 * 120.00166 * 294.16131 * 18 15 14 20 20 C 1.52994 * 109.47209 * 152.90794 * 19 18 15 21 21 C 1.53002 * 109.47251 * 177.94570 * 20 19 18 22 22 C 1.52995 * 115.54796 * 294.40734 * 21 20 19 23 23 O 1.42899 * 109.47602 * 294.13677 * 22 21 20 24 24 C 1.52999 * 117.50081 * 148.73780 * 21 20 19 25 25 C 1.52993 * 117.49913 * 80.07812 * 21 20 19 26 26 H 0.97001 * 120.00685 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.12373 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.87535 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.75297 * 180.29248 * 12 11 10 30 30 H 1.07997 * 119.87374 * 179.72301 * 13 12 11 31 31 H 0.97004 * 119.99714 * 114.16157 * 18 15 14 32 32 H 1.09005 * 109.46858 * 272.90852 * 19 18 15 33 33 H 1.08994 * 109.47063 * 32.90705 * 19 18 15 34 34 H 1.08997 * 109.47278 * 297.94648 * 20 19 18 35 35 H 1.09002 * 109.47223 * 57.94328 * 20 19 18 36 36 H 1.09003 * 109.47103 * 54.14118 * 22 21 20 37 37 H 1.09005 * 109.47233 * 174.13792 * 22 21 20 38 38 H 0.96700 * 114.00342 * 184.98817 * 23 22 21 39 39 H 1.09003 * 117.49733 * 0.02562 * 24 21 20 40 40 H 1.08998 * 117.50228 * 145.01704 * 24 21 20 41 41 H 1.09003 * 117.50106 * 214.98273 * 25 21 20 42 42 H 1.09003 * 117.50252 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.6975 1.3493 -0.1222 5 1 1.7939 2.4481 -1.1467 6 1 1.9774 2.3422 1.2691 7 6 2.0080 -1.2119 -0.0005 8 1 3.0591 -1.2286 0.2468 9 6 1.3388 -2.4145 -0.3248 10 6 0.1738 -2.3870 -1.1138 11 6 -0.4695 -3.5634 -1.4227 12 6 0.0290 -4.7733 -0.9644 13 6 1.1724 -4.8119 -0.1817 14 6 1.8323 -3.6476 0.1397 15 16 3.2899 -3.7010 1.1282 16 8 3.0903 -2.7753 2.1877 17 8 3.5799 -5.0757 1.3414 18 7 4.5284 -3.0990 0.2084 19 6 4.9736 -3.8230 -0.9849 20 6 5.5794 -2.8355 -1.9841 21 6 6.0907 -3.5977 -3.2083 22 6 7.2614 -4.5487 -2.9518 23 8 8.4149 -3.7938 -2.5756 24 6 6.0481 -2.8775 -4.5575 25 6 5.0626 -4.0112 -4.2632 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2138 -1.4460 -1.4755 28 1 -1.3639 -3.5446 -2.0278 29 1 -0.4797 -5.6923 -1.2156 30 1 1.5493 -5.7596 0.1736 31 1 4.9590 -2.2669 0.4597 32 1 5.7244 -4.5612 -0.7029 33 1 4.1225 -4.3270 -1.4426 34 1 4.8184 -2.1192 -2.2939 35 1 6.4076 -2.3051 -1.5142 36 1 7.0004 -5.2379 -2.1486 37 1 7.4766 -5.1131 -3.8592 38 1 9.2160 -4.3252 -2.4713 39 1 5.6562 -1.8605 -4.5730 40 1 6.8539 -3.0815 -5.2626 41 1 5.2205 -4.9607 -4.7748 42 1 4.0220 -3.7399 -4.0854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601431300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:53 Heat of formation + Delta-G solvation = -92.252193 kcal Electronic energy + Delta-G solvation = -26350.356677 eV Core-core repulsion = 22615.444275 eV Total energy + Delta-G solvation = -3734.912402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.87664 -37.58944 -36.20541 -35.94404 -34.81631 -34.78024 -33.92218 -30.25430 -29.58119 -29.27223 -26.68116 -25.57096 -23.20274 -22.19243 -21.64804 -21.13199 -19.20146 -18.39019 -17.72225 -17.40014 -16.77978 -16.29413 -15.65946 -15.49277 -15.39979 -14.97462 -14.37073 -14.05466 -13.85421 -13.64947 -13.29628 -13.14244 -12.86553 -12.78548 -12.12765 -11.92032 -11.65544 -11.49034 -11.47940 -11.33065 -11.27050 -11.18242 -11.06486 -10.99908 -10.73215 -10.59458 -10.50851 -10.41064 -10.03093 -9.91587 -9.74847 -9.45790 -9.37735 -8.68648 -8.02993 -7.64262 -7.07927 -4.77676 1.57419 2.34739 2.71257 2.94758 3.00030 3.09847 3.57129 3.73681 3.97344 4.26780 4.37226 4.69906 4.76843 4.79349 4.95304 5.11754 5.26909 5.31207 5.40003 5.53359 5.65532 5.66507 5.70945 5.80486 5.93953 6.01658 6.06905 6.16119 6.23304 6.25123 6.39117 6.43222 6.54866 6.75334 6.96421 7.09213 7.29660 7.49755 7.51953 7.58009 7.69278 7.82157 7.88464 8.28540 8.47076 8.65315 9.83927 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.005349 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.572942 B = 5233.550325 C = 5868.117167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.080 3.920 3 Si 0.913 3.087 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.185 3.815 10 C -0.163 4.163 11 C -0.076 4.076 12 C -0.253 4.253 13 C -0.002 4.002 14 C -0.778 4.778 15 S 2.701 3.299 16 O -0.968 6.968 17 O -0.999 6.999 18 N -1.121 6.121 19 C 0.135 3.865 20 C -0.089 4.089 21 C -0.125 4.125 22 C 0.111 3.889 23 O -0.568 6.568 24 C -0.166 4.166 25 C -0.167 4.167 26 H 0.288 0.712 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.411 0.589 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.376 0.624 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -3.387 -8.152 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.106 0.894 9 C 0.181 3.819 10 C -0.183 4.183 11 C -0.095 4.095 12 C -0.273 4.273 13 C -0.021 4.021 14 C -0.874 4.874 15 S 2.798 3.202 16 O -0.959 6.959 17 O -0.989 6.989 18 N -0.878 5.878 19 C 0.008 3.992 20 C -0.128 4.128 21 C -0.126 4.126 22 C 0.034 3.966 23 O -0.373 6.373 24 C -0.203 4.203 25 C -0.204 4.204 26 H 0.099 0.901 27 H 0.145 0.855 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.244 0.756 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.222 0.778 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.607 -3.223 -7.317 12.499 hybrid contribution 0.224 0.721 -0.577 0.950 sum 9.831 -2.502 -7.894 12.854 Atomic orbital electron populations 1.69799 1.07860 1.30115 1.31504 1.25983 0.94838 1.01960 0.91375 0.86158 0.81251 0.79966 0.79033 1.17657 1.19442 1.19184 1.19924 0.97862 0.91203 1.38132 0.89399 1.16983 0.90150 0.89660 0.85153 1.21555 0.98251 0.97134 1.01314 1.20888 0.97476 0.93424 0.97706 1.20468 1.01116 0.96520 1.09236 1.20241 0.93640 0.95270 0.92995 1.29814 1.25651 0.99973 1.31925 1.01084 0.73286 0.72279 0.73559 1.93537 1.85639 1.63894 1.52796 1.93443 1.85117 1.34976 1.85403 1.55665 1.53518 1.37374 1.41208 1.20989 0.99318 0.93948 0.84913 1.21311 1.00632 0.97516 0.93332 1.21311 0.97702 1.02124 0.91422 1.21660 0.84616 0.92020 0.98348 1.86510 1.19712 1.38748 1.92288 1.22985 1.01818 0.97681 0.97789 1.23107 0.96603 0.99320 1.01392 0.90113 0.85548 0.88919 0.88835 0.87515 0.75563 0.92448 0.90822 0.90368 0.90519 0.92659 0.93824 0.77779 0.88530 0.89027 0.88799 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.66 10.79 55.55 0.60 -18.06 16 2 C 0.08 1.90 5.20 -17.35 -0.09 1.81 16 3 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 4 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.44 -10.95 7.84 -37.74 -0.30 -11.24 16 8 H 0.09 2.03 5.38 -52.49 -0.28 1.75 16 9 C 0.19 4.67 5.59 -106.82 -0.60 4.07 16 10 C -0.16 -3.99 8.70 -38.87 -0.34 -4.33 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 12 C -0.25 -5.51 10.05 -39.29 -0.39 -5.91 16 13 C 0.00 -0.04 9.53 -39.66 -0.38 -0.41 16 14 C -0.78 -18.57 5.79 -38.87 -0.23 -18.80 16 15 S 2.70 59.73 4.89 -107.50 -0.53 59.20 16 16 O -0.97 -24.34 16.75 -57.17 -0.96 -25.29 16 17 O -1.00 -22.99 16.72 -57.17 -0.96 -23.95 16 18 N -1.12 -20.00 4.93 -10.62 -0.05 -20.06 16 19 C 0.14 2.10 6.02 -4.05 -0.02 2.07 16 20 C -0.09 -1.23 5.25 -26.73 -0.14 -1.37 16 21 C -0.12 -1.49 1.77 -154.51 -0.27 -1.77 16 22 C 0.11 1.15 6.72 37.15 0.25 1.40 16 23 O -0.57 -6.02 13.59 -35.23 -0.48 -6.50 16 24 C -0.17 -1.83 9.94 -26.70 -0.27 -2.09 16 25 C -0.17 -1.87 9.94 -26.70 -0.27 -2.13 16 26 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 27 H 0.13 3.12 6.04 -52.49 -0.32 2.80 16 28 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.11 2.25 7.33 -52.49 -0.38 1.86 16 31 H 0.41 6.65 8.35 -34.47 -0.29 6.36 16 32 H 0.06 0.83 6.90 -51.93 -0.36 0.47 16 33 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 34 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 36 H 0.06 0.56 6.92 -51.93 -0.36 0.20 16 37 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 38 H 0.38 2.21 9.12 45.56 0.42 2.62 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -31.52 360.18 -10.33 -41.85 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -4.92 Total: 15.52 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: -3.44 Total: -40.80 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.55 Total: -38.11 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -2.39 Total: -55.74 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 59.73 SS G_CDS: -0.53 Total: 59.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.52 -10.33 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601431300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.402 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds