Wall clock time and date at job start Tue Mar 31 2020 14:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47596 * 185.00877 * 3 2 1 5 5 H 1.48503 * 109.47092 * 305.01413 * 3 2 1 6 6 H 1.48504 * 109.47128 * 65.01154 * 3 2 1 7 7 C 1.39940 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00138 * 195.33406 * 7 2 1 9 9 C 1.41395 * 120.00139 * 15.32758 * 7 2 1 10 10 C 1.40735 * 120.24335 * 24.17568 * 9 7 2 11 11 C 1.37595 * 119.74809 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24716 * 359.73259 * 11 10 9 13 13 C 1.38615 * 120.50062 * 0.54886 * 12 11 10 14 14 C 1.37641 * 120.24639 * 359.44955 * 13 12 11 15 15 S 1.76203 * 120.12662 * 180.30010 * 14 13 12 16 16 O 1.42103 * 106.39864 * 231.53806 * 15 14 13 17 17 O 1.42100 * 106.39934 * 4.45668 * 15 14 13 18 18 N 1.65599 * 107.21830 * 117.99912 * 15 14 13 19 19 C 1.46498 * 120.00166 * 294.16131 * 18 15 14 20 20 C 1.52994 * 109.47209 * 152.90794 * 19 18 15 21 21 C 1.53002 * 109.47251 * 177.94570 * 20 19 18 22 22 C 1.52995 * 115.54796 * 294.40734 * 21 20 19 23 23 O 1.42899 * 109.47602 * 294.13677 * 22 21 20 24 24 C 1.52999 * 117.50081 * 148.73780 * 21 20 19 25 25 C 1.52993 * 117.49913 * 80.07812 * 21 20 19 26 26 H 0.97001 * 120.00685 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.12373 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.87535 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.75297 * 180.29248 * 12 11 10 30 30 H 1.07997 * 119.87374 * 179.72301 * 13 12 11 31 31 H 0.97004 * 119.99714 * 114.16157 * 18 15 14 32 32 H 1.09005 * 109.46858 * 272.90852 * 19 18 15 33 33 H 1.08994 * 109.47063 * 32.90705 * 19 18 15 34 34 H 1.08997 * 109.47278 * 297.94648 * 20 19 18 35 35 H 1.09002 * 109.47223 * 57.94328 * 20 19 18 36 36 H 1.09003 * 109.47103 * 54.14118 * 22 21 20 37 37 H 1.09005 * 109.47233 * 174.13792 * 22 21 20 38 38 H 0.96700 * 114.00342 * 184.98817 * 23 22 21 39 39 H 1.09003 * 117.49733 * 0.02562 * 24 21 20 40 40 H 1.08998 * 117.50228 * 145.01704 * 24 21 20 41 41 H 1.09003 * 117.50106 * 214.98273 * 25 21 20 42 42 H 1.09003 * 117.50252 * 0.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.6975 1.3493 -0.1222 5 1 1.7939 2.4481 -1.1467 6 1 1.9774 2.3422 1.2691 7 6 2.0080 -1.2119 -0.0005 8 1 3.0591 -1.2286 0.2468 9 6 1.3388 -2.4145 -0.3248 10 6 0.1738 -2.3870 -1.1138 11 6 -0.4695 -3.5634 -1.4227 12 6 0.0290 -4.7733 -0.9644 13 6 1.1724 -4.8119 -0.1817 14 6 1.8323 -3.6476 0.1397 15 16 3.2899 -3.7010 1.1282 16 8 3.0903 -2.7753 2.1877 17 8 3.5799 -5.0757 1.3414 18 7 4.5284 -3.0990 0.2084 19 6 4.9736 -3.8230 -0.9849 20 6 5.5794 -2.8355 -1.9841 21 6 6.0907 -3.5977 -3.2083 22 6 7.2614 -4.5487 -2.9518 23 8 8.4149 -3.7938 -2.5756 24 6 6.0481 -2.8775 -4.5575 25 6 5.0626 -4.0112 -4.2632 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2138 -1.4460 -1.4755 28 1 -1.3639 -3.5446 -2.0278 29 1 -0.4797 -5.6923 -1.2156 30 1 1.5493 -5.7596 0.1736 31 1 4.9590 -2.2669 0.4597 32 1 5.7244 -4.5612 -0.7029 33 1 4.1225 -4.3270 -1.4426 34 1 4.8184 -2.1192 -2.2939 35 1 6.4076 -2.3051 -1.5142 36 1 7.0004 -5.2379 -2.1486 37 1 7.4766 -5.1131 -3.8592 38 1 9.2160 -4.3252 -2.4713 39 1 5.6562 -1.8605 -4.5730 40 1 6.8539 -3.0815 -5.2626 41 1 5.2205 -4.9607 -4.7748 42 1 4.0220 -3.7399 -4.0854 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601431300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:53 Heat of formation + Delta-G solvation = -114.832019 kcal Electronic energy + Delta-G solvation = -26351.335811 eV Core-core repulsion = 22615.444275 eV Total energy + Delta-G solvation = -3735.891537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.79196 -39.36728 -38.03571 -36.82634 -36.67282 -36.08280 -35.67247 -32.04232 -31.35037 -30.51719 -27.52476 -27.36301 -24.37979 -23.43893 -23.11984 -22.91338 -20.51167 -19.75828 -19.48962 -18.43437 -18.16751 -17.94212 -17.19450 -17.00207 -16.46405 -16.27339 -16.01161 -15.59676 -15.08958 -15.06202 -14.80319 -14.52512 -14.48983 -13.79032 -13.66626 -13.35083 -13.31683 -13.01123 -12.95438 -12.86173 -12.81437 -12.77439 -12.67444 -12.46490 -12.34779 -12.12200 -11.67878 -11.65781 -11.29597 -11.19220 -11.15719 -10.87935 -10.62824 -10.13932 -9.83107 -9.46536 -8.83103 -6.61790 -0.15895 0.54601 0.97367 1.35503 1.48236 1.51570 2.13511 2.33797 2.60524 2.74094 2.99634 3.48205 3.49901 3.77400 3.84411 3.90404 4.03618 4.15435 4.34296 4.34478 4.44561 4.50928 4.52897 4.64120 4.70955 4.76966 4.81063 4.93097 4.98942 5.06634 5.14914 5.16421 5.26498 5.29639 5.32979 5.36587 5.51513 5.71788 5.83153 6.02441 6.07885 6.21727 6.48024 6.65541 6.84523 6.99751 8.12200 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.005349 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.572942 B = 5233.550325 C = 5868.117167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.267 1.267 7 C -0.472 4.472 8 H 0.093 0.907 9 C 0.162 3.838 10 C -0.190 4.190 11 C -0.075 4.075 12 C -0.252 4.252 13 C -0.015 4.015 14 C -0.795 4.795 15 S 2.719 3.281 16 O -1.003 7.003 17 O -1.009 7.009 18 N -1.111 6.111 19 C 0.131 3.869 20 C -0.082 4.082 21 C -0.138 4.138 22 C 0.113 3.887 23 O -0.587 6.587 24 C -0.161 4.161 25 C -0.166 4.166 26 H 0.296 0.704 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.419 0.581 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.417 -3.860 -9.357 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.111 0.889 9 C 0.157 3.843 10 C -0.210 4.210 11 C -0.094 4.094 12 C -0.272 4.272 13 C -0.035 4.035 14 C -0.889 4.889 15 S 2.816 3.184 16 O -0.993 6.993 17 O -0.999 6.999 18 N -0.871 5.871 19 C 0.005 3.995 20 C -0.121 4.121 21 C -0.139 4.139 22 C 0.035 3.965 23 O -0.395 6.395 24 C -0.198 4.198 25 C -0.203 4.203 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.805 -3.717 -8.530 14.259 hybrid contribution -0.165 0.768 -0.223 0.817 sum 10.640 -2.948 -8.753 14.090 Atomic orbital electron populations 1.69828 1.09084 1.31446 1.32045 1.26822 0.95589 1.04859 0.90614 0.85285 0.80349 0.75901 0.79309 1.16853 1.17926 1.19203 1.20213 0.98391 0.91985 1.39336 0.88867 1.17287 0.90825 0.90445 0.85739 1.21620 0.99112 0.97713 1.02540 1.21233 0.97986 0.92922 0.97237 1.20859 1.00625 0.97621 1.08140 1.20562 0.94097 0.95542 0.93286 1.30076 1.26830 1.00120 1.31922 1.00381 0.73283 0.71690 0.73092 1.93482 1.86340 1.64763 1.54743 1.93419 1.85264 1.35548 1.85688 1.55319 1.52195 1.37900 1.41680 1.21201 0.99441 0.94542 0.84286 1.21205 1.00038 0.97034 0.93863 1.21372 0.98821 1.02888 0.90777 1.21649 0.84005 0.91415 0.99402 1.86455 1.20710 1.39937 1.92385 1.23033 1.02063 0.97303 0.97391 1.23120 0.95599 1.00348 1.01240 0.89249 0.86514 0.86099 0.85590 0.86103 0.74527 0.90810 0.91609 0.91894 0.90447 0.92643 0.91643 0.75505 0.89252 0.87399 0.86778 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.50 10.79 21.82 0.24 -39.27 16 2 C 0.04 1.91 5.20 85.26 0.44 2.36 16 3 Si 0.97 36.07 29.59 68.60 2.03 38.10 16 4 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 6 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.47 -23.76 7.84 23.46 0.18 -23.58 16 8 H 0.09 4.40 5.38 -2.91 -0.02 4.38 16 9 C 0.16 8.30 5.59 -21.29 -0.12 8.18 16 10 C -0.19 -9.45 8.70 22.73 0.20 -9.25 16 11 C -0.08 -3.29 10.02 22.22 0.22 -3.07 16 12 C -0.25 -10.62 10.05 22.46 0.23 -10.39 16 13 C -0.02 -0.68 9.53 22.22 0.21 -0.47 16 14 C -0.80 -38.29 5.79 22.73 0.13 -38.16 16 15 S 2.72 120.96 4.89 -56.49 -0.28 120.68 16 16 O -1.00 -51.24 16.75 -128.00 -2.14 -53.39 16 17 O -1.01 -46.04 16.72 -128.00 -2.14 -48.18 16 18 N -1.11 -39.51 4.93 -187.50 -0.92 -40.43 16 19 C 0.13 3.99 6.02 86.38 0.52 4.51 16 20 C -0.08 -2.23 5.25 30.59 0.16 -2.07 16 21 C -0.14 -3.09 1.77 -52.18 -0.09 -3.18 16 22 C 0.11 2.06 6.72 71.98 0.48 2.54 16 23 O -0.59 -11.07 13.59 -148.98 -2.03 -13.10 16 24 C -0.16 -3.29 9.94 30.62 0.30 -2.99 16 25 C -0.17 -3.48 9.94 30.61 0.30 -3.18 16 26 H 0.30 13.01 8.30 -92.71 -0.77 12.24 16 27 H 0.12 5.93 6.04 -2.91 -0.02 5.91 16 28 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.12 4.97 7.33 -2.91 -0.02 4.95 16 31 H 0.42 13.53 8.35 -96.74 -0.81 12.72 16 32 H 0.07 2.02 6.90 -2.38 -0.02 2.00 16 33 H 0.07 2.11 7.92 -2.39 -0.02 2.09 16 34 H 0.06 1.87 8.09 -2.39 -0.02 1.85 16 35 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.06 1.00 6.92 -2.39 -0.02 0.98 16 37 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 38 H 0.40 3.67 9.12 -74.06 -0.68 2.99 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.36 360.18 -2.49 -69.85 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.42 Total: 44.48 kcal Atomic # 6 Polarization: -81.92 SS G_CDS: 3.18 Total: -78.75 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -0.69 Total: -79.70 kcal Atomic # 8 Polarization: -108.36 SS G_CDS: -6.31 Total: -114.67 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 16 Polarization: 120.96 SS G_CDS: -0.28 Total: 120.68 kcal Total: -67.36 -2.49 -69.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601431300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.981 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds