Wall clock time and date at job start Tue Mar 31 2020 14:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48504 * 109.46971 * 269.99115 * 3 2 1 5 5 H 1.48490 * 109.47408 * 29.99632 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99589 * 3 2 1 7 7 C 1.39944 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00428 * 197.85399 * 7 2 1 9 9 C 1.41405 * 119.99773 * 17.85196 * 7 2 1 10 10 C 1.40711 * 120.24409 * 204.38373 * 9 7 2 11 11 C 1.37613 * 119.74577 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24821 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.75019 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40120 * 336.46160 * 13 12 11 15 15 O 1.42101 * 106.40226 * 203.54220 * 13 12 11 16 16 N 1.65598 * 107.21877 * 90.00313 * 13 12 11 17 17 C 1.46501 * 120.00289 * 64.99737 * 16 13 12 18 18 C 1.52998 * 109.46932 * 165.00098 * 17 16 13 19 19 C 1.53005 * 109.46904 * 180.02562 * 18 17 16 20 20 C 1.53779 * 113.61588 * 174.99874 * 19 18 17 21 21 C 1.53786 * 87.08181 * 140.06435 * 20 19 18 22 22 O 1.42900 * 113.61786 * 219.93836 * 21 20 19 23 23 C 1.53783 * 87.17181 * 334.52716 * 21 20 19 24 24 C 1.38637 * 120.50045 * 0.25282 * 12 11 10 25 25 C 1.37613 * 120.24587 * 359.44975 * 24 12 11 26 26 H 0.96993 * 119.99545 * 0.02562 * 1 2 3 27 27 H 1.08011 * 120.12694 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.87665 * 180.02562 * 11 10 9 29 29 H 0.97003 * 119.99671 * 245.00103 * 16 13 12 30 30 H 1.08996 * 109.46981 * 45.00011 * 17 16 13 31 31 H 1.09003 * 109.47145 * 285.00315 * 17 16 13 32 32 H 1.09002 * 109.47128 * 60.00789 * 18 17 16 33 33 H 1.08995 * 109.47095 * 300.00113 * 18 17 16 34 34 H 1.08999 * 112.84913 * 43.80417 * 19 18 17 35 35 H 1.09005 * 113.60766 * 25.51928 * 20 19 18 36 36 H 1.08989 * 113.61844 * 254.61346 * 20 19 18 37 37 H 1.09000 * 113.61172 * 89.11242 * 21 20 19 38 38 H 0.96690 * 114.00005 * 178.46785 * 22 21 20 39 39 H 1.08998 * 113.61451 * 140.02255 * 23 21 20 40 40 H 1.09004 * 113.61708 * 270.92655 * 23 21 20 41 41 H 1.08002 * 119.87663 * 179.70331 * 24 12 11 42 42 H 1.08008 * 120.12608 * 180.27206 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3521 -2.4072 -0.3743 10 6 1.8258 -3.6498 0.0854 11 6 1.1799 -4.8067 -0.2862 12 6 0.0668 -4.7511 -1.1107 13 16 -0.7498 -6.2406 -1.5790 14 8 0.2109 -7.2805 -1.4565 15 8 -1.4385 -5.9573 -2.7892 16 7 -1.9125 -6.5415 -0.4388 17 6 -3.0421 -5.6216 -0.2839 18 6 -4.1392 -6.2958 0.5423 19 6 -5.3192 -5.3352 0.7035 20 6 -6.5294 -5.9605 1.4171 21 6 -6.6943 -4.6165 2.1463 22 8 -7.0487 -4.7524 3.5240 23 6 -5.1901 -4.3941 1.9162 24 6 -0.4053 -3.5328 -1.5743 25 6 0.2212 -2.3628 -1.2105 26 1 -0.4849 0.8400 -0.0004 27 1 2.6931 -3.6955 0.7276 28 1 1.5414 -5.7616 0.0658 29 1 -1.8455 -7.3269 0.1266 30 1 -3.4355 -5.3607 -1.2663 31 1 -2.7074 -4.7177 0.2252 32 1 -3.7458 -6.5566 1.5248 33 1 -4.4738 -7.1996 0.0332 34 1 -5.5761 -4.8212 -0.2227 35 1 -6.2675 -6.7866 2.0782 36 1 -7.3561 -6.1983 0.7478 37 1 -7.3270 -3.9060 1.6145 38 1 -7.1309 -3.9112 3.9937 39 1 -4.9363 -3.3682 1.6495 40 1 -4.5627 -4.7928 2.7134 41 1 -1.2704 -3.5016 -2.2201 42 1 -0.1508 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702456139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:03 Heat of formation + Delta-G solvation = -107.114819 kcal Electronic energy + Delta-G solvation = -25048.962499 eV Core-core repulsion = 21313.405606 eV Total energy + Delta-G solvation = -3735.556894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.59002 -37.58705 -36.53237 -36.03393 -35.11624 -34.62315 -34.05159 -30.26986 -29.86195 -29.47692 -25.89666 -25.82795 -24.27130 -21.76224 -21.43533 -21.13207 -19.76082 -18.79327 -17.66399 -17.61145 -16.99166 -16.54536 -15.89505 -15.58804 -15.43934 -14.82835 -14.57347 -14.31840 -14.11226 -13.44922 -13.32857 -13.21990 -12.58229 -12.53242 -12.41187 -12.20651 -12.01284 -11.80542 -11.72016 -11.46784 -11.44187 -11.34780 -11.27621 -11.21754 -10.97096 -10.91543 -10.69793 -10.41250 -10.33092 -9.88595 -9.77132 -9.63502 -9.52742 -8.99860 -7.97425 -7.71558 -7.16491 -4.81835 1.28165 2.24028 2.86420 2.89748 2.91217 2.92231 3.64817 3.73652 4.02069 4.22750 4.36249 4.45116 4.54584 4.60996 4.73888 5.02947 5.15991 5.23205 5.38361 5.40945 5.48545 5.60017 5.64269 5.70343 5.80812 5.86026 6.03478 6.06264 6.11012 6.16220 6.30049 6.34782 6.66536 6.69655 6.90199 7.03753 7.31159 7.35249 7.41784 7.44745 7.62263 7.75804 7.95559 8.30413 8.49941 8.63643 9.75010 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.003849 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.926416 B = 7272.360223 C = 9647.692418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.088 0.912 9 C 0.140 3.860 10 C -0.239 4.239 11 C 0.002 3.998 12 C -0.787 4.787 13 S 2.694 3.306 14 O -0.988 6.988 15 O -0.985 6.985 16 N -1.127 6.127 17 C 0.121 3.879 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.124 4.124 21 C 0.072 3.928 22 O -0.564 6.564 23 C -0.166 4.166 24 C -0.017 4.017 25 C -0.183 4.183 26 H 0.288 0.712 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.409 0.591 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.377 0.623 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 -3.739 4.110 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.018 4.018 12 C -0.883 4.883 13 S 2.793 3.207 14 O -0.978 6.978 15 O -0.976 6.976 16 N -0.884 5.884 17 C -0.005 4.005 18 C -0.151 4.151 19 C -0.127 4.127 20 C -0.161 4.161 21 C 0.014 3.986 22 O -0.369 6.369 23 C -0.204 4.204 24 C -0.037 4.037 25 C -0.203 4.203 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.241 0.759 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.998 -4.616 3.099 12.324 hybrid contribution 0.494 1.750 0.916 2.036 sum -10.505 -2.866 4.015 11.605 Atomic orbital electron populations 1.69815 1.07911 1.30305 1.30880 1.26122 0.94893 1.02100 0.91784 0.86146 0.80527 0.79478 0.79812 1.18775 1.19876 1.18189 1.19957 0.98514 0.91182 1.36698 0.89435 1.17852 0.90041 0.92121 0.86383 1.21053 1.04446 0.92729 1.07766 1.20164 0.92155 0.97275 0.92175 1.29166 1.16509 1.15930 1.26664 1.01171 0.72312 0.74245 0.72967 1.93487 1.60645 1.56923 1.86783 1.93477 1.74469 1.86288 1.43324 1.55713 1.39051 1.35951 1.57647 1.21203 0.86109 0.92465 1.00766 1.21708 0.94282 0.98416 1.00673 1.22339 0.95105 0.97252 0.98008 1.23108 0.97993 0.96816 0.98186 1.23395 0.94570 0.98417 0.82248 1.86505 1.92469 1.35248 1.22689 1.23829 0.97279 1.00704 0.98586 1.20263 0.96797 0.91699 0.94955 1.21332 1.00076 0.96844 1.02045 0.90033 0.88215 0.87801 0.75880 0.90670 0.91319 0.91085 0.91063 0.88476 0.89214 0.90965 0.90212 0.77595 0.90823 0.89083 0.87917 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.83 10.95 55.55 0.61 -17.22 16 2 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 3 Si 0.92 16.82 29.59 -169.99 -5.03 11.79 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 7 C -0.44 -10.61 9.05 -37.74 -0.34 -10.95 16 8 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.51 5.57 -106.82 -0.60 2.91 16 10 C -0.24 -5.64 9.80 -38.88 -0.38 -6.02 16 11 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 12 C -0.79 -17.18 5.97 -39.29 -0.23 -17.42 16 13 S 2.69 51.58 5.73 -107.50 -0.62 50.96 16 14 O -0.99 -20.84 17.26 -57.17 -0.99 -21.83 16 15 O -0.99 -20.96 16.72 -57.17 -0.96 -21.92 16 16 N -1.13 -16.65 6.00 -10.61 -0.06 -16.72 16 17 C 0.12 1.63 6.21 -4.04 -0.03 1.61 16 18 C -0.11 -1.17 5.20 -26.73 -0.14 -1.31 16 19 C -0.11 -1.04 3.65 -89.66 -0.33 -1.37 16 20 C -0.12 -1.12 7.47 -25.92 -0.19 -1.32 16 21 C 0.07 0.66 5.20 -25.92 -0.13 0.53 16 22 O -0.56 -5.53 13.67 -35.23 -0.48 -6.01 16 23 C -0.17 -1.66 7.48 -25.77 -0.19 -1.85 16 24 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 25 C -0.18 -4.50 8.70 -38.88 -0.34 -4.84 16 26 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 27 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 28 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 29 H 0.41 5.03 8.65 -34.47 -0.30 4.73 16 30 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.89 8.13 -51.93 -0.42 0.47 16 35 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.07 0.58 8.14 -51.94 -0.42 0.16 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.38 2.17 9.12 45.56 0.42 2.59 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 41 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 42 H 0.12 3.04 6.16 -52.48 -0.32 2.71 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -30.82 363.52 -10.95 -41.76 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.15 Total: 13.25 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: -3.75 Total: -39.55 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.54 Total: -33.93 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -2.42 Total: -49.76 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 16 Polarization: 51.58 SS G_CDS: -0.62 Total: 50.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.82 -10.95 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702456139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.350 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds