Wall clock time and date at job start Tue Mar 31 2020 14:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99841 * 2 1 4 4 H 1.48504 * 109.46971 * 269.99115 * 3 2 1 5 5 H 1.48490 * 109.47408 * 29.99632 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99589 * 3 2 1 7 7 C 1.39944 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00428 * 197.85399 * 7 2 1 9 9 C 1.41405 * 119.99773 * 17.85196 * 7 2 1 10 10 C 1.40711 * 120.24409 * 204.38373 * 9 7 2 11 11 C 1.37613 * 119.74577 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24821 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.75019 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40120 * 336.46160 * 13 12 11 15 15 O 1.42101 * 106.40226 * 203.54220 * 13 12 11 16 16 N 1.65598 * 107.21877 * 90.00313 * 13 12 11 17 17 C 1.46501 * 120.00289 * 64.99737 * 16 13 12 18 18 C 1.52998 * 109.46932 * 165.00098 * 17 16 13 19 19 C 1.53005 * 109.46904 * 180.02562 * 18 17 16 20 20 C 1.53779 * 113.61588 * 174.99874 * 19 18 17 21 21 C 1.53786 * 87.08181 * 140.06435 * 20 19 18 22 22 O 1.42900 * 113.61786 * 219.93836 * 21 20 19 23 23 C 1.53783 * 87.17181 * 334.52716 * 21 20 19 24 24 C 1.38637 * 120.50045 * 0.25282 * 12 11 10 25 25 C 1.37613 * 120.24587 * 359.44975 * 24 12 11 26 26 H 0.96993 * 119.99545 * 0.02562 * 1 2 3 27 27 H 1.08011 * 120.12694 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.87665 * 180.02562 * 11 10 9 29 29 H 0.97003 * 119.99671 * 245.00103 * 16 13 12 30 30 H 1.08996 * 109.46981 * 45.00011 * 17 16 13 31 31 H 1.09003 * 109.47145 * 285.00315 * 17 16 13 32 32 H 1.09002 * 109.47128 * 60.00789 * 18 17 16 33 33 H 1.08995 * 109.47095 * 300.00113 * 18 17 16 34 34 H 1.08999 * 112.84913 * 43.80417 * 19 18 17 35 35 H 1.09005 * 113.60766 * 25.51928 * 20 19 18 36 36 H 1.08989 * 113.61844 * 254.61346 * 20 19 18 37 37 H 1.09000 * 113.61172 * 89.11242 * 21 20 19 38 38 H 0.96690 * 114.00005 * 178.46785 * 22 21 20 39 39 H 1.08998 * 113.61451 * 140.02255 * 23 21 20 40 40 H 1.09004 * 113.61708 * 270.92655 * 23 21 20 41 41 H 1.08002 * 119.87663 * 179.70331 * 24 12 11 42 42 H 1.08008 * 120.12608 * 180.27206 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3521 -2.4072 -0.3743 10 6 1.8258 -3.6498 0.0854 11 6 1.1799 -4.8067 -0.2862 12 6 0.0668 -4.7511 -1.1107 13 16 -0.7498 -6.2406 -1.5790 14 8 0.2109 -7.2805 -1.4565 15 8 -1.4385 -5.9573 -2.7892 16 7 -1.9125 -6.5415 -0.4388 17 6 -3.0421 -5.6216 -0.2839 18 6 -4.1392 -6.2958 0.5423 19 6 -5.3192 -5.3352 0.7035 20 6 -6.5294 -5.9605 1.4171 21 6 -6.6943 -4.6165 2.1463 22 8 -7.0487 -4.7524 3.5240 23 6 -5.1901 -4.3941 1.9162 24 6 -0.4053 -3.5328 -1.5743 25 6 0.2212 -2.3628 -1.2105 26 1 -0.4849 0.8400 -0.0004 27 1 2.6931 -3.6955 0.7276 28 1 1.5414 -5.7616 0.0658 29 1 -1.8455 -7.3269 0.1266 30 1 -3.4355 -5.3607 -1.2663 31 1 -2.7074 -4.7177 0.2252 32 1 -3.7458 -6.5566 1.5248 33 1 -4.4738 -7.1996 0.0332 34 1 -5.5761 -4.8212 -0.2227 35 1 -6.2675 -6.7866 2.0782 36 1 -7.3561 -6.1983 0.7478 37 1 -7.3270 -3.9060 1.6145 38 1 -7.1309 -3.9112 3.9937 39 1 -4.9363 -3.3682 1.6495 40 1 -4.5627 -4.7928 2.7134 41 1 -1.2704 -3.5016 -2.2201 42 1 -0.1508 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702456139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:02 Heat of formation + Delta-G solvation = -129.096329 kcal Electronic energy + Delta-G solvation = -25049.915689 eV Core-core repulsion = 21313.405606 eV Total energy + Delta-G solvation = -3736.510084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34054 -39.38109 -38.14986 -37.03050 -36.77232 -35.80635 -35.57439 -32.06494 -31.29215 -30.86011 -27.61866 -26.64029 -25.23445 -23.32350 -22.95485 -22.52054 -20.64571 -20.15099 -19.42266 -18.67972 -18.31583 -18.05378 -17.22897 -17.12487 -16.41289 -15.93749 -15.83868 -15.62222 -15.35631 -15.14674 -14.93172 -14.25623 -14.10655 -13.96107 -13.59526 -13.55215 -13.34140 -13.14781 -13.07650 -13.02581 -12.90853 -12.88905 -12.63185 -12.59149 -12.29863 -11.98092 -11.82859 -11.55958 -11.54811 -11.34222 -11.23525 -11.07305 -10.62659 -10.31898 -9.78923 -9.54997 -8.87492 -6.65108 -0.28035 0.48471 1.05725 1.35881 1.43521 1.50360 2.11504 2.26694 2.53333 2.95034 3.33995 3.53200 3.57077 3.65475 3.70640 3.87590 4.04951 4.12028 4.30358 4.32004 4.35739 4.46716 4.64510 4.71997 4.84042 4.87004 4.88128 4.92745 4.94999 5.02999 5.10281 5.17058 5.24254 5.28430 5.35598 5.52456 5.56615 5.59495 5.76363 5.93091 6.15298 6.22731 6.48987 6.68342 6.80939 6.91225 8.07672 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.003849 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.926416 B = 7272.360223 C = 9647.692418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.468 4.468 8 H 0.090 0.910 9 C 0.112 3.888 10 C -0.259 4.259 11 C -0.002 4.002 12 C -0.797 4.797 13 S 2.727 3.273 14 O -1.004 7.004 15 O -1.003 7.003 16 N -1.111 6.111 17 C 0.115 3.885 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.121 4.121 21 C 0.074 3.926 22 O -0.581 6.581 23 C -0.172 4.172 24 C -0.019 4.019 25 C -0.206 4.206 26 H 0.299 0.701 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.424 0.576 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.392 0.608 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 -3.941 4.421 13.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.178 1.178 7 C -0.494 4.494 8 H 0.108 0.892 9 C 0.108 3.892 10 C -0.279 4.279 11 C -0.022 4.022 12 C -0.890 4.890 13 S 2.822 3.178 14 O -0.994 6.994 15 O -0.993 6.993 16 N -0.872 5.872 17 C -0.011 4.011 18 C -0.144 4.144 19 C -0.126 4.126 20 C -0.158 4.158 21 C 0.016 3.984 22 O -0.389 6.389 23 C -0.210 4.210 24 C -0.039 4.039 25 C -0.227 4.227 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.143 0.857 29 H 0.260 0.740 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.242 0.758 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.134 0.866 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.947 -4.806 3.431 13.327 hybrid contribution 0.705 1.720 0.843 2.041 sum -11.243 -3.086 4.274 12.417 Atomic orbital electron populations 1.69836 1.09243 1.31821 1.30757 1.26957 0.95599 1.05003 0.90731 0.85071 0.79177 0.75012 0.79824 1.18536 1.18658 1.17846 1.20232 0.98913 0.92171 1.38132 0.89218 1.18195 0.90698 0.93201 0.87082 1.21279 1.05232 0.92908 1.08483 1.20454 0.92053 0.97787 0.91930 1.29659 1.16708 1.17018 1.25595 1.00235 0.72042 0.72708 0.72823 1.93460 1.61912 1.56891 1.87147 1.93455 1.74709 1.86317 1.44839 1.55287 1.38097 1.36601 1.57187 1.21379 0.86316 0.92139 1.01281 1.21677 0.93464 0.98842 1.00397 1.22348 0.95056 0.97056 0.98137 1.23084 0.97976 0.96594 0.98156 1.23454 0.93933 0.98795 0.82260 1.86461 1.92404 1.36908 1.23175 1.23837 0.98135 1.00378 0.98614 1.20457 0.96948 0.91711 0.94819 1.21351 1.00969 0.97137 1.03207 0.89015 0.87212 0.85737 0.74032 0.90699 0.92542 0.90654 0.89645 0.87836 0.89750 0.89599 0.88628 0.75784 0.91483 0.90173 0.86591 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.45 10.95 21.83 0.24 -37.21 16 2 C 0.04 1.68 5.14 85.26 0.44 2.12 16 3 Si 0.99 34.19 29.59 68.60 2.03 36.22 16 4 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 6 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 7 C -0.47 -23.30 9.05 23.46 0.21 -23.09 16 8 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 9 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 10 C -0.26 -12.41 9.80 22.73 0.22 -12.19 16 11 C 0.00 -0.11 9.49 22.22 0.21 0.10 16 12 C -0.80 -34.64 5.97 22.46 0.13 -34.50 16 13 S 2.73 100.94 5.73 -56.49 -0.32 100.62 16 14 O -1.00 -40.75 17.26 -128.00 -2.21 -42.96 16 15 O -1.00 -41.41 16.72 -128.00 -2.14 -43.55 16 16 N -1.11 -30.84 6.00 -187.49 -1.12 -31.96 16 17 C 0.11 2.93 6.21 86.38 0.54 3.47 16 18 C -0.10 -1.99 5.20 30.60 0.16 -1.83 16 19 C -0.11 -1.87 3.65 -10.17 -0.04 -1.91 16 20 C -0.12 -1.94 7.47 31.12 0.23 -1.71 16 21 C 0.07 1.23 5.20 31.12 0.16 1.39 16 22 O -0.58 -10.57 13.67 -148.98 -2.04 -12.60 16 23 C -0.17 -3.28 7.48 31.21 0.23 -3.05 16 24 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 25 C -0.21 -10.49 8.70 22.73 0.20 -10.29 16 26 H 0.30 12.46 8.30 -92.71 -0.77 11.69 16 27 H 0.11 4.86 8.06 -2.90 -0.02 4.84 16 28 H 0.12 4.91 7.60 -2.91 -0.02 4.89 16 29 H 0.42 9.42 8.65 -96.74 -0.84 8.58 16 30 H 0.07 1.94 7.75 -2.39 -0.02 1.93 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.38 7.86 -2.39 -0.02 1.36 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.70 8.13 -2.39 -0.02 1.68 16 35 H 0.08 1.46 8.10 -2.38 -0.02 1.44 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.39 4.01 9.12 -74.06 -0.68 3.34 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.69 7.91 -2.38 -0.02 1.67 16 41 H 0.12 4.91 7.59 -2.91 -0.02 4.89 16 42 H 0.11 5.77 6.16 -2.91 -0.02 5.76 16 Total: -1.00 -65.60 363.52 -3.23 -68.83 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -0.46 Total: 39.13 kcal Atomic # 6 Polarization: -79.30 SS G_CDS: 2.79 Total: -76.51 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.89 Total: -69.18 kcal Atomic # 8 Polarization: -92.73 SS G_CDS: -6.39 Total: -99.12 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Atomic # 16 Polarization: 100.94 SS G_CDS: -0.32 Total: 100.62 kcal Total: -65.60 -3.23 -68.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702456139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.266 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds