Wall clock time and date at job start Tue Mar 31 2020 14:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47103 * 2 1 4 4 N 1.46893 * 109.47335 * 239.99767 * 2 1 3 5 5 C 1.46902 * 110.99870 * 85.00049 * 4 2 1 6 6 C 1.52999 * 109.46849 * 179.97438 * 5 4 2 7 7 S 1.82844 * 110.31382 * 57.20274 * 6 5 4 8 8 C 1.83112 * 99.46485 * 217.17387 * 7 6 5 9 9 C 1.54489 * 105.03675 * 44.18533 * 8 7 6 10 10 S 1.82118 * 106.98598 * 313.66919 * 9 8 7 11 11 C 1.50706 * 109.46558 * 119.99626 * 2 1 3 12 12 C 1.38294 * 119.92908 * 260.00052 * 11 2 1 13 13 C 1.38107 * 120.06624 * 179.97438 * 12 11 2 14 14 C 1.38869 * 119.93033 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.07285 * 180.02562 * 14 13 12 16 16 C 1.34825 * 117.00690 * 174.43767 * 15 14 13 17 17 H 1.08005 * 119.99952 * 5.05628 * 16 15 14 18 18 C 1.38648 * 120.00448 * 185.05536 * 16 15 14 19 19 N 1.31561 * 120.00054 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00233 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46927 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47130 * 120.00088 * 20 18 16 23 23 H 1.48499 * 109.46973 * 239.99613 * 20 18 16 24 24 C 1.38880 * 119.86399 * 0.02562 * 14 13 12 25 25 C 1.38100 * 119.93272 * 0.02562 * 24 14 13 26 26 H 1.09002 * 109.47546 * 300.00197 * 1 2 3 27 27 H 1.09005 * 109.46848 * 60.00003 * 1 2 3 28 28 H 1.08994 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.00898 * 110.99913 * 208.95630 * 4 2 1 30 30 H 1.08995 * 109.47262 * 299.99717 * 5 4 2 31 31 H 1.09003 * 109.47236 * 60.00165 * 5 4 2 32 32 H 1.09004 * 110.27918 * 179.30077 * 6 5 4 33 33 H 1.08998 * 110.26960 * 285.30980 * 8 7 6 34 34 H 1.09007 * 110.44005 * 163.14361 * 8 7 6 35 35 H 1.09003 * 109.96095 * 194.28636 * 9 8 7 36 36 H 1.08999 * 109.99144 * 73.07350 * 9 8 7 37 37 H 1.07998 * 119.96965 * 359.70221 * 12 11 2 38 38 H 1.07999 * 120.03071 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00455 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.03804 * 179.97438 * 24 14 13 41 41 H 1.07995 * 119.96969 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5964 -0.5330 -3.5740 7 16 1.5241 -1.9708 -3.9291 8 6 2.7978 -3.1697 -4.4707 9 6 3.9479 -3.0213 -3.4499 10 16 4.2455 -1.2369 -3.2397 11 6 2.0322 -0.7104 1.2306 12 6 2.4584 0.0213 2.3240 13 6 2.9186 -0.6268 3.4534 14 6 2.9527 -2.0146 3.4905 15 8 3.4041 -2.6546 4.5993 16 6 3.3033 -3.9990 4.6139 17 1 2.9546 -4.5239 3.7368 18 6 3.6473 -4.7077 5.7548 19 7 4.0726 -4.0684 6.8231 20 14 3.5082 -6.5704 5.7747 21 1 3.0096 -7.0437 4.4585 22 1 4.8432 -7.1636 6.0413 23 1 2.5609 -6.9847 6.8406 24 6 2.5241 -2.7465 2.3907 25 6 2.0659 -2.0926 1.2639 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6162 -2.5525 31 1 2.7589 1.0462 -2.1182 32 1 2.6365 0.1314 -4.4373 33 1 3.1469 -2.9228 -5.4733 34 1 2.3998 -4.1843 -4.4480 35 1 4.8472 -3.5063 -3.8295 36 1 3.6600 -3.4653 -2.4970 37 1 2.4354 1.1006 2.2932 38 1 3.2517 -0.0549 4.3068 39 1 4.3136 -4.5642 7.6212 40 1 2.5498 -3.8259 2.4163 41 1 1.7329 -2.6611 0.4083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703113857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:36 Heat of formation + Delta-G solvation = 3.825705 kcal Electronic energy + Delta-G solvation = -22570.432310 eV Core-core repulsion = 19282.439029 eV Total energy + Delta-G solvation = -3287.993281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.19664 -37.61677 -35.78910 -33.48946 -32.60481 -31.97483 -30.13208 -28.52684 -27.85278 -25.34744 -24.06985 -23.26880 -22.36356 -21.52657 -19.83753 -17.96311 -17.31065 -16.97053 -16.88185 -16.24032 -15.39790 -15.09484 -14.85643 -14.47101 -14.17125 -14.06956 -13.70215 -13.61484 -13.32446 -13.19497 -12.95640 -12.69078 -12.64185 -12.33705 -11.93978 -11.84450 -11.67087 -11.62204 -11.25616 -11.17256 -11.07554 -10.68385 -10.59274 -10.42093 -10.26439 -9.89484 -9.29884 -8.81323 -8.43472 -8.13317 -8.08443 -7.88396 -7.14778 -6.43614 -4.02227 0.89949 1.34655 1.51493 2.25582 2.34578 2.38916 3.12848 3.14630 3.20071 3.97858 4.10025 4.13091 4.40067 4.50950 4.59936 4.88099 4.96268 5.08237 5.09427 5.13701 5.26737 5.31594 5.35168 5.42383 5.54315 5.73099 5.83969 5.84410 6.00242 6.07300 6.26585 6.43163 6.52074 6.73822 6.93385 6.99895 7.15091 7.24586 7.47257 7.48832 7.59752 7.86395 8.01990 9.02414 9.73277 10.74647 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.003108 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.560102 B = 9006.673860 C =10047.332209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.144 3.856 3 H 0.040 0.960 4 N -0.672 5.672 5 C 0.083 3.917 6 C -0.014 4.014 7 S -0.208 6.208 8 C -0.090 4.090 9 C -0.082 4.082 10 S -0.252 6.252 11 C -0.190 4.190 12 C -0.068 4.068 13 C -0.194 4.194 14 C 0.155 3.845 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.236 4.236 25 C -0.050 4.050 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.354 0.646 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.269 0.731 40 H 0.125 0.875 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 4.982 -22.137 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.035 3.965 3 H 0.057 0.943 4 N -0.307 5.307 5 C -0.050 4.050 6 C -0.253 4.253 7 S 0.019 5.981 8 C -0.241 4.241 9 C -0.232 4.232 10 S -0.027 6.027 11 C -0.191 4.191 12 C -0.087 4.087 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.255 4.255 25 C -0.069 4.069 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.771 5.169 -21.507 22.439 hybrid contribution 0.928 -0.895 -0.200 1.305 sum -2.843 4.274 -21.707 22.306 Atomic orbital electron populations 1.21764 0.94575 1.02365 1.00158 1.20115 0.95097 0.94367 0.86935 0.94252 1.60737 1.34868 1.31520 1.03586 1.21747 1.00702 0.93300 0.89229 1.25850 0.94340 1.00784 1.04371 1.87817 1.15173 1.09388 1.85763 1.24504 0.95527 1.02628 1.01415 1.24354 1.01578 0.94147 1.03160 1.87278 1.15773 1.05788 1.93844 1.19233 1.10086 0.93806 0.95987 1.20464 0.97617 0.98067 0.92539 1.20154 1.09670 0.91850 0.99659 1.19406 0.91084 0.91884 0.87464 1.83973 1.69407 1.21695 1.33220 1.21374 1.46229 0.78518 1.00531 0.89018 1.25282 0.96498 1.00472 0.94295 1.70049 1.40884 1.36146 1.02790 0.85660 0.78296 0.80774 0.78783 1.19088 1.20176 1.20152 1.21184 1.09163 1.00507 0.94644 1.20597 0.96284 0.93371 0.96643 0.92773 0.93738 0.91894 0.82398 0.89461 0.93384 0.86076 0.88560 0.85811 0.86486 0.87369 0.87410 0.86675 0.92115 0.85693 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.39 37.16 0.35 -1.31 16 2 C 0.14 1.93 2.82 -68.86 -0.19 1.74 16 3 H 0.04 0.51 7.66 -51.93 -0.40 0.11 16 4 N -0.67 -8.29 5.18 -107.95 -0.56 -8.85 16 5 C 0.08 0.84 5.30 -3.82 -0.02 0.82 16 6 C -0.01 -0.13 3.94 37.16 0.15 0.01 16 7 S -0.21 -2.07 21.84 -104.32 -2.28 -4.35 16 8 C -0.09 -0.66 7.05 37.94 0.27 -0.39 16 9 C -0.08 -0.67 6.85 37.94 0.26 -0.41 16 10 S -0.25 -2.59 20.93 -104.32 -2.18 -4.77 16 11 C -0.19 -3.18 4.72 -104.57 -0.49 -3.68 16 12 C -0.07 -1.21 9.66 -39.61 -0.38 -1.59 16 13 C -0.19 -4.11 9.99 -39.40 -0.39 -4.51 16 14 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 15 O -0.18 -5.15 9.76 0.06 0.00 -5.15 16 16 C -0.39 -10.94 9.49 30.88 0.29 -10.65 16 17 H 0.09 2.39 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 20 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 24 C -0.24 -5.11 9.17 -39.39 -0.36 -5.47 16 25 C -0.05 -0.92 9.00 -39.61 -0.36 -1.28 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.35 4.81 6.60 -39.29 -0.26 4.55 16 30 H 0.09 0.85 7.44 -51.93 -0.39 0.46 16 31 H 0.05 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 38 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 41 H 0.12 1.92 7.71 -52.49 -0.40 1.52 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -30.32 358.91 -10.88 -41.20 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.76 Total: 7.87 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -1.24 Total: -22.24 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.20 Total: -33.52 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -4.46 Total: -9.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.32 -10.88 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703113857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.021 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds